Wall clock time and date at job start Mon Mar 30 2020 06:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00162 * 2 1 4 4 H 1.08999 * 109.47359 * 324.99770 * 3 2 1 5 5 C 1.53001 * 109.47179 * 84.99906 * 3 2 1 6 6 C 1.50696 * 109.47358 * 204.99715 * 3 2 1 7 7 C 1.38114 * 120.02923 * 340.00465 * 6 3 2 8 8 C 1.38387 * 120.05795 * 179.97438 * 7 6 3 9 9 Cl 1.73599 * 119.94268 * 180.02562 * 8 7 6 10 10 C 1.38432 * 120.11248 * 0.02562 * 8 7 6 11 11 C 1.38068 * 120.05575 * 0.02562 * 10 8 7 12 12 C 1.38859 * 120.02839 * 159.72651 * 6 3 2 13 13 O 1.35758 * 120.05468 * 359.97438 * 12 6 3 14 14 C 1.34827 * 116.99965 * 174.14478 * 13 12 6 15 15 H 1.08006 * 119.99680 * 5.07212 * 14 13 12 16 16 C 1.38644 * 120.00056 * 185.06474 * 14 13 12 17 17 N 1.31556 * 120.00202 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00155 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47035 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47181 * 119.99957 * 18 16 14 21 21 H 1.48503 * 109.47336 * 240.00407 * 18 16 14 22 22 H 1.09003 * 109.47508 * 300.00399 * 1 2 3 23 23 H 1.09003 * 109.47431 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46906 * 59.99975 * 1 2 3 25 25 H 1.00899 * 110.99711 * 123.95561 * 2 1 3 26 26 H 1.09004 * 109.46921 * 300.00064 * 5 3 2 27 27 H 1.08999 * 109.47086 * 59.99696 * 5 3 2 28 28 H 1.08993 * 109.47379 * 180.02562 * 5 3 2 29 29 H 1.08001 * 119.97246 * 359.97438 * 7 6 3 30 30 H 1.07994 * 119.97370 * 179.97438 * 10 8 7 31 31 H 1.08000 * 120.03326 * 179.97438 * 11 10 8 32 32 H 0.97002 * 120.00565 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3398 2.0123 -0.5895 5 6 2.0608 1.8926 1.4370 6 6 3.3776 1.3789 -0.6004 7 6 4.1102 0.2097 -0.6635 8 6 5.3793 0.2158 -1.2151 9 17 6.2971 -1.2556 -1.2935 10 6 5.9181 1.3933 -1.7046 11 6 5.1904 2.5650 -1.6430 12 6 3.9136 2.5602 -1.0959 13 8 3.1931 3.7095 -1.0407 14 6 3.8159 4.8414 -1.4264 15 1 4.8138 4.7957 -1.8369 16 6 3.1751 6.0640 -1.2963 17 7 1.9597 6.1197 -0.7959 18 14 4.0376 7.6322 -1.8314 19 1 5.3863 7.3007 -2.3571 20 1 3.2419 8.2966 -2.8948 21 1 4.1701 8.5459 -0.6682 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 1.8305 -0.5261 0.7814 26 1 1.0611 1.8872 1.8713 27 1 2.7165 1.2517 2.0265 28 1 2.4510 2.9103 1.4370 29 1 3.6922 -0.7101 -0.2819 30 1 6.9089 1.3956 -2.1343 31 1 5.6113 3.4835 -2.0246 32 1 1.5115 6.9751 -0.7045 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050209848.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:25 Heat of formation + Delta-G solvation = -30.299518 kcal Electronic energy + Delta-G solvation = -16758.368027 eV Core-core repulsion = 13937.619577 eV Total energy + Delta-G solvation = -2820.748449 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.08725 -38.64139 -37.76191 -36.70166 -34.28446 -32.57937 -30.75026 -29.65294 -27.39105 -26.09441 -24.42369 -22.97203 -21.64965 -19.87358 -18.86304 -17.27862 -16.81915 -16.31909 -16.08831 -15.60803 -15.37419 -15.32479 -14.88668 -14.47754 -14.04950 -13.68451 -13.56159 -13.45590 -13.20203 -12.92136 -12.79254 -12.77242 -12.21729 -12.13538 -12.09134 -11.81911 -11.75184 -11.10262 -10.75624 -9.72987 -9.40607 -8.86828 -8.47152 -6.13150 0.47487 0.53529 1.36631 1.40105 1.43195 1.53504 2.16930 2.72954 3.09903 3.27466 3.46676 3.86816 4.09057 4.23580 4.30541 4.36385 4.52302 4.56823 4.66585 4.79356 4.87012 4.93385 5.04167 5.15059 5.17283 5.21646 5.42194 5.48014 5.62814 5.96759 5.99529 6.09921 6.53380 6.98090 7.74877 8.74647 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.017938 B = 0.007436 C = 0.005446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.598341 B = 3764.461051 C = 5139.782295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.686 5.686 3 C 0.149 3.851 4 H 0.054 0.946 5 C -0.159 4.159 6 C -0.140 4.140 7 C -0.039 4.039 8 C -0.115 4.115 9 Cl -0.077 7.077 10 C -0.063 4.063 11 C -0.234 4.234 12 C 0.126 3.874 13 O -0.209 6.209 14 C -0.413 4.413 15 H 0.102 0.898 16 C -0.015 4.015 17 N -0.912 5.912 18 Si 1.012 2.988 19 H -0.252 1.252 20 H -0.271 1.271 21 H -0.270 1.270 22 H 0.026 0.974 23 H 0.092 0.908 24 H 0.049 0.951 25 H 0.350 0.650 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.035 0.965 29 H 0.153 0.847 30 H 0.145 0.855 31 H 0.130 0.870 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.189 -10.198 1.766 10.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.317 5.317 3 C 0.038 3.962 4 H 0.072 0.928 5 C -0.218 4.218 6 C -0.143 4.143 7 C -0.058 4.058 8 C -0.142 4.142 9 Cl -0.048 7.048 10 C -0.082 4.082 11 C -0.253 4.253 12 C 0.074 3.926 13 O -0.115 6.115 14 C -0.489 4.489 15 H 0.119 0.881 16 C -0.214 4.214 17 N -0.549 5.549 18 Si 0.832 3.168 19 H -0.175 1.175 20 H -0.196 1.196 21 H -0.195 1.195 22 H 0.044 0.956 23 H 0.110 0.890 24 H 0.068 0.932 25 H 0.169 0.831 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.054 0.946 29 H 0.170 0.830 30 H 0.162 0.838 31 H 0.148 0.852 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.908 -10.213 1.190 10.686 hybrid contribution 0.084 1.262 0.558 1.383 sum 2.992 -8.951 1.748 9.598 Atomic orbital electron populations 1.22240 0.86797 1.02854 1.00138 1.60487 1.08704 1.12347 1.50185 1.19842 0.91771 0.89649 0.94891 0.92786 1.22239 1.01870 1.01251 0.96465 1.19058 0.97917 0.90834 1.06451 1.20587 0.91094 0.97464 0.96678 1.20570 0.94928 0.87699 1.10960 1.98292 1.73860 1.35020 1.97671 1.20871 0.99898 0.90031 0.97362 1.21165 0.95750 0.99594 1.08828 1.19724 0.91240 0.87811 0.93868 1.83955 1.38624 1.13163 1.75721 1.21849 1.01705 0.82749 1.42628 0.88093 1.26433 0.96676 1.01776 0.96492 1.70167 1.13682 1.27368 1.43725 0.84614 0.78419 0.75580 0.78198 1.17546 1.19576 1.19510 0.95562 0.88980 0.93172 0.83075 0.91775 0.91031 0.94588 0.82986 0.83755 0.85188 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.50 127.69 1.34 2.06 16 2 N -0.69 -19.74 5.44 -518.53 -2.82 -22.56 16 3 C 0.15 5.54 2.47 44.17 0.11 5.65 16 4 H 0.05 2.43 7.50 -2.39 -0.02 2.41 16 5 C -0.16 -5.60 9.14 71.98 0.66 -4.95 16 6 C -0.14 -5.68 5.10 -19.75 -0.10 -5.78 16 7 C -0.04 -1.36 9.10 22.28 0.20 -1.15 16 8 C -0.11 -3.83 6.32 22.35 0.14 -3.69 16 9 Cl -0.08 -2.13 28.95 -2.72 -0.08 -2.21 16 10 C -0.06 -2.21 9.82 22.28 0.22 -1.99 16 11 C -0.23 -9.86 9.17 22.39 0.21 -9.66 16 12 C 0.13 5.93 6.62 22.58 0.15 6.08 16 13 O -0.21 -11.72 8.93 -22.80 -0.20 -11.92 16 14 C -0.41 -22.89 9.49 67.92 0.64 -22.24 16 15 H 0.10 5.16 5.20 -2.91 -0.02 5.14 16 16 C -0.02 -0.83 5.49 84.83 0.47 -0.36 16 17 N -0.91 -53.50 13.67 21.61 0.30 -53.21 16 18 Si 1.01 41.50 29.55 68.60 2.03 43.53 16 19 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 20 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 21 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 22 H 0.03 0.63 7.44 -2.39 -0.02 0.61 16 23 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.05 1.40 8.06 -2.38 -0.02 1.38 16 25 H 0.35 8.33 8.09 -89.69 -0.73 7.60 16 26 H 0.06 2.00 7.45 -2.38 -0.02 1.99 16 27 H 0.07 2.15 8.13 -2.39 -0.02 2.13 16 28 H 0.03 1.54 8.09 -2.39 -0.02 1.52 16 29 H 0.15 4.45 6.84 -2.91 -0.02 4.43 16 30 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 31 H 0.13 5.50 5.64 -2.91 -0.02 5.48 16 32 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -62.45 288.04 3.67 -58.77 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.42 Total: 23.62 kcal Atomic # 6 Polarization: -40.06 SS G_CDS: 4.03 Total: -36.03 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: -2.53 Total: -75.77 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.20 Total: -11.92 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Atomic # 17 Polarization: -2.13 SS G_CDS: -0.08 Total: -2.21 kcal Total: -62.45 3.67 -58.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050209848.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.475 kcal (2) G-P(sol) polarization free energy of solvation -62.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds