Wall clock time and date at job start Mon Mar 30 2020 06:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86809 * 120.00042 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00161 * 3 2 1 5 5 H 1.48507 * 109.46798 * 30.00262 * 3 2 1 6 6 H 1.48502 * 109.46953 * 150.00082 * 3 2 1 7 7 C 1.37878 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99440 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00137 * 179.97438 * 7 2 1 10 10 N 1.46907 * 109.46860 * 184.91236 * 9 7 2 11 11 C 1.46764 * 110.99520 * 294.16647 * 10 9 7 12 12 C 1.53424 * 108.58947 * 285.48979 * 11 10 9 13 13 O 1.43135 * 107.89979 * 296.73297 * 12 11 10 14 14 C 1.36201 * 116.69289 * 45.33847 * 13 12 11 15 15 C 1.38953 * 118.72145 * 165.22733 * 14 13 12 16 16 F 1.35098 * 119.92287 * 359.75682 * 15 14 13 17 17 C 1.38510 * 120.15376 * 179.73244 * 15 14 13 18 18 F 1.35103 * 120.01754 * 179.97438 * 17 15 14 19 19 C 1.38419 * 119.95313 * 359.96588 * 17 15 14 20 20 C 1.38077 * 120.10284 * 0.32518 * 19 17 15 21 21 C 1.38869 * 121.38734 * 345.04381 * 14 13 12 22 22 H 0.97000 * 119.99440 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47443 * 64.91158 * 9 7 2 24 24 H 1.09004 * 109.47677 * 304.90504 * 9 7 2 25 25 H 1.09006 * 109.61273 * 165.76164 * 11 10 9 26 26 H 1.08991 * 109.61922 * 45.22328 * 11 10 9 27 27 H 1.09002 * 109.77631 * 177.13158 * 12 11 10 28 28 H 1.09002 * 109.77561 * 56.33230 * 12 11 10 29 29 H 1.08000 * 119.94538 * 180.02562 * 19 17 15 30 30 H 1.08003 * 119.84069 * 179.75550 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 7 4.0012 -2.5739 -0.1202 11 6 3.6481 -3.3615 1.0668 12 6 4.5615 -2.9378 2.2244 13 8 5.9080 -3.2636 1.8641 14 6 6.3012 -2.9321 0.6029 15 6 7.6581 -2.9363 0.3038 16 9 8.5576 -3.2604 1.2582 17 6 8.0906 -2.6094 -0.9708 18 9 9.4106 -2.6138 -1.2586 19 6 7.1694 -2.2784 -1.9495 20 6 5.8204 -2.2670 -1.6554 21 6 5.3772 -2.5976 -0.3783 22 1 -0.4849 0.8401 -0.0004 23 1 3.8753 -0.7584 0.9296 24 1 3.8746 -0.6057 -0.8439 25 1 3.7899 -4.4218 0.8579 26 1 2.6081 -3.1744 1.3340 27 1 4.2819 -3.4752 3.1305 28 1 4.4735 -1.8640 2.3896 29 1 7.5067 -2.0240 -2.9434 30 1 5.1056 -2.0043 -2.4212 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075883383.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:07 Heat of formation + Delta-G solvation = -104.652917 kcal Electronic energy + Delta-G solvation = -18969.999008 eV Core-core repulsion = 15594.229673 eV Total energy + Delta-G solvation = -3375.769335 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.081 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.51168 -49.58733 -42.16704 -38.49450 -37.63488 -34.68094 -31.84047 -31.16406 -30.64366 -27.66057 -25.67576 -24.25961 -23.64454 -21.36585 -19.68920 -18.95437 -18.84571 -18.39260 -17.56461 -17.32921 -16.84741 -16.55747 -16.13368 -16.04238 -15.82557 -15.49908 -15.30030 -14.87183 -14.42347 -14.15771 -13.71197 -13.43970 -13.17745 -12.86432 -12.62779 -12.53737 -12.17029 -12.10630 -11.85788 -11.54013 -10.81934 -10.27912 -9.54556 -8.96713 -8.31756 -6.36977 -0.22887 -0.03818 1.34729 1.37346 1.45209 1.86976 2.21741 2.30904 2.62990 2.93124 3.03438 3.23489 3.51043 3.68408 3.86568 3.97303 4.02811 4.16330 4.43568 4.51811 4.69822 4.77626 4.85482 4.92485 4.97123 5.05189 5.40035 5.45853 5.77680 5.89230 6.16839 6.46632 6.69204 7.26519 8.83524 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.027772 B = 0.006897 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.964961 B = 4058.548980 C = 4523.217985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.021 3.979 3 Si 0.934 3.066 4 H -0.261 1.261 5 H -0.283 1.283 6 H -0.255 1.255 7 C -0.520 4.520 8 H 0.051 0.949 9 C 0.176 3.824 10 N -0.484 5.484 11 C 0.020 3.980 12 C 0.024 3.976 13 O -0.314 6.314 14 C 0.061 3.939 15 C 0.034 3.966 16 F -0.134 7.134 17 C 0.075 3.925 18 F -0.128 7.128 19 C -0.120 4.120 20 C -0.069 4.069 21 C 0.045 3.955 22 H 0.269 0.731 23 H -0.002 1.002 24 H 0.042 0.958 25 H 0.095 0.905 26 H 0.104 0.896 27 H 0.148 0.852 28 H 0.063 0.937 29 H 0.187 0.813 30 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.620 -3.746 -1.072 14.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.186 1.186 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.559 4.559 8 H 0.069 0.931 9 C 0.052 3.948 10 N -0.200 5.200 11 C -0.107 4.107 12 C -0.052 4.052 13 O -0.227 6.227 14 C 0.011 3.989 15 C 0.013 3.987 16 F -0.113 7.113 17 C 0.054 3.946 18 F -0.106 7.106 19 C -0.139 4.139 20 C -0.089 4.089 21 C -0.053 4.053 22 H 0.078 0.922 23 H 0.015 0.985 24 H 0.060 0.940 25 H 0.113 0.887 26 H 0.122 0.878 27 H 0.166 0.834 28 H 0.081 0.919 29 H 0.204 0.796 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 13.338 -3.938 -1.268 13.965 hybrid contribution 0.302 0.957 0.928 1.367 sum 13.641 -2.982 -0.340 13.967 Atomic orbital electron populations 1.70008 1.07954 1.28272 1.51569 1.25659 0.95418 1.02578 0.94131 0.85909 0.79321 0.79402 0.79557 1.18595 1.20875 1.17886 1.21092 0.89992 0.93785 1.50990 0.93116 1.20189 0.94974 0.83719 0.95954 1.59216 1.07925 1.14907 1.37920 1.22946 1.01699 0.98395 0.87692 1.23812 0.78961 1.01983 1.00409 1.86277 1.32703 1.77520 1.26246 1.18831 0.91027 1.03240 0.85799 1.16992 0.84311 1.10588 0.86823 1.91458 1.66111 1.90806 1.62921 1.17303 0.79001 1.06248 0.92032 1.91510 1.31142 1.94416 1.93565 1.21147 0.90771 1.01583 1.00365 1.21088 0.95795 0.97571 0.94461 1.19172 0.88466 1.03568 0.94098 0.92204 0.98486 0.94045 0.88660 0.87786 0.83392 0.91916 0.79611 0.82136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.66 13.96 21.45 0.30 -54.36 16 2 C 0.02 1.14 5.47 84.65 0.46 1.60 16 3 Si 0.93 40.64 27.37 68.60 1.88 42.52 16 4 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.25 -10.47 6.69 99.48 0.67 -9.80 16 7 C -0.52 -27.09 8.96 25.60 0.23 -26.86 16 8 H 0.05 2.92 7.28 -2.91 -0.02 2.90 16 9 C 0.18 7.58 3.61 85.55 0.31 7.89 16 10 N -0.48 -18.41 4.60 -698.53 -3.21 -21.62 16 11 C 0.02 0.68 5.87 86.47 0.51 1.19 16 12 C 0.02 0.73 7.06 72.12 0.51 1.24 16 13 O -0.31 -10.61 10.22 -95.85 -0.98 -11.59 16 14 C 0.06 2.05 6.48 22.59 0.15 2.19 16 15 C 0.03 1.09 7.30 22.51 0.16 1.25 16 16 F -0.13 -4.50 16.96 44.97 0.76 -3.74 16 17 C 0.08 2.04 7.30 22.38 0.16 2.21 16 18 F -0.13 -3.40 17.18 44.97 0.77 -2.63 16 19 C -0.12 -2.73 10.01 22.27 0.22 -2.51 16 20 C -0.07 -1.91 9.32 22.45 0.21 -1.70 16 21 C 0.05 1.52 5.13 38.21 0.20 1.72 16 22 H 0.27 14.68 8.31 -92.71 -0.77 13.90 16 23 H 0.00 -0.11 5.93 -2.38 -0.01 -0.12 16 24 H 0.04 1.74 6.77 -2.38 -0.02 1.73 16 25 H 0.10 2.93 8.14 -2.38 -0.02 2.91 16 26 H 0.10 3.85 6.49 -2.39 -0.02 3.83 16 27 H 0.15 3.42 8.14 -2.39 -0.02 3.40 16 28 H 0.06 2.06 6.61 -2.39 -0.02 2.05 16 29 H 0.19 2.78 8.06 -2.91 -0.02 2.76 16 30 H 0.16 4.07 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -61.08 261.50 3.78 -57.31 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 1.14 Total: 5.89 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 3.12 Total: -11.78 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -2.91 Total: -75.98 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -0.98 Total: -11.59 kcal Atomic # 9 Polarization: -7.91 SS G_CDS: 1.54 Total: -6.37 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 1.88 Total: 42.52 kcal Total: -61.08 3.78 -57.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075883383.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.346 kcal (2) G-P(sol) polarization free energy of solvation -61.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds