Wall clock time and date at job start Mon Mar 30 2020 06:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46986 * 2 1 4 4 C 1.38314 * 120.83608 * 89.74377 * 3 2 1 5 5 Cl 1.73602 * 120.41988 * 359.70201 * 4 3 2 6 6 N 1.32664 * 119.16579 * 179.97438 * 4 3 2 7 7 C 1.31788 * 120.98297 * 0.02562 * 6 4 3 8 8 N 1.31734 * 121.84860 * 359.97438 * 7 6 4 9 9 C 1.33039 * 120.72514 * 0.02562 * 8 7 6 10 10 N 1.38559 * 120.52371 * 179.97438 * 9 8 7 11 11 C 1.46904 * 110.99556 * 62.77956 * 10 9 8 12 12 C 1.46892 * 111.00491 * 298.82996 * 10 9 8 13 13 C 1.50701 * 109.47571 * 190.00006 * 12 10 9 14 14 H 1.08002 * 119.99695 * 359.97438 * 13 12 10 15 15 C 1.37875 * 120.00349 * 179.97438 * 13 12 10 16 16 N 1.31522 * 119.99700 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00186 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47124 * 59.99817 * 17 15 13 19 19 H 1.48493 * 109.47183 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47129 * 300.00085 * 17 15 13 21 21 H 1.08998 * 109.47545 * 60.00107 * 1 2 3 22 22 H 1.09002 * 109.47077 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47690 * 299.99794 * 1 2 3 24 24 H 1.09004 * 109.46825 * 240.00037 * 2 1 3 25 25 H 1.09003 * 109.47109 * 120.00055 * 2 1 3 26 26 H 1.08000 * 119.07475 * 180.02562 * 7 6 4 27 27 H 1.09007 * 109.47086 * 54.36727 * 11 10 9 28 28 H 1.08999 * 109.47054 * 174.35665 * 11 10 9 29 29 H 1.08989 * 109.47600 * 294.35929 * 11 10 9 30 30 H 1.09011 * 109.46996 * 310.00147 * 12 10 9 31 31 H 1.09000 * 109.47638 * 69.99241 * 12 10 9 32 32 H 0.97000 * 119.99527 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2636 2.0910 1.1876 5 17 1.9716 1.3088 2.7096 6 7 2.7062 3.3410 1.1489 7 6 2.9261 3.9476 -0.0002 8 7 2.7192 3.3468 -1.1541 9 6 2.2757 2.0933 -1.1979 10 7 2.0590 1.4656 -2.4140 11 6 3.3113 1.3388 -3.1715 12 6 1.0391 2.1746 -3.1981 13 6 0.6529 1.3398 -4.3919 14 1 1.1190 0.3788 -4.5523 15 6 -0.2952 1.8028 -5.2794 16 7 -0.8631 2.9728 -5.0837 17 14 -0.7733 0.7683 -6.7595 18 1 -1.3191 -0.5334 -6.2981 19 1 -1.8044 1.4850 -7.5520 20 1 0.4241 0.5312 -7.6052 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.2869 4.9656 0.0043 27 1 4.0585 0.8366 -2.5568 28 1 3.1322 0.7554 -4.0746 29 1 3.6725 2.3301 -3.4450 30 1 0.1602 2.3495 -2.5775 31 1 1.4402 3.1297 -3.5371 32 1 -1.5299 3.2987 -5.7083 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082565351.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:25 Heat of formation + Delta-G solvation = 43.634281 kcal Electronic energy + Delta-G solvation = -16935.218132 eV Core-core repulsion = 14149.968444 eV Total energy + Delta-G solvation = -2785.249688 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.083 amu Computer time = 4.72 seconds Orbital eigenvalues (eV) -41.01111 -37.17878 -36.63723 -34.37840 -33.01668 -32.06515 -29.57901 -27.40982 -25.84172 -24.67246 -23.35429 -21.52390 -21.01898 -17.97781 -17.23130 -16.34470 -15.37453 -14.76269 -14.60762 -14.43970 -14.22085 -13.58275 -13.46046 -13.12232 -12.48246 -12.11411 -12.09966 -11.68530 -11.50718 -11.43253 -11.08505 -10.90279 -10.70908 -10.66082 -10.37084 -10.26583 -9.87877 -9.48122 -9.13747 -8.92390 -8.56263 -7.85008 -6.12443 -4.15845 0.99039 1.10903 1.69273 3.28290 3.33043 3.34901 3.82135 4.06722 4.34030 4.38427 4.68298 4.98432 5.15084 5.23499 5.39639 5.69276 5.73884 5.86678 5.97554 6.19375 6.22024 6.29029 6.54017 6.54532 6.66703 6.98896 7.06312 7.20896 7.62592 7.73768 7.96577 8.19731 8.32151 8.89537 9.48418 10.98292 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.030452 B = 0.006063 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.254251 B = 4616.702691 C = 4991.885057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.067 4.067 3 C -0.146 4.146 4 C 0.214 3.786 5 Cl -0.023 7.023 6 N -0.530 5.530 7 C 0.312 3.688 8 N -0.538 5.538 9 C 0.379 3.621 10 N -0.491 5.491 11 C 0.044 3.956 12 C 0.204 3.796 13 C -0.514 4.514 14 H 0.066 0.934 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.902 3.098 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.276 1.276 21 H 0.069 0.931 22 H 0.059 0.941 23 H 0.046 0.954 24 H 0.095 0.905 25 H 0.069 0.931 26 H 0.199 0.801 27 H 0.045 0.955 28 H 0.087 0.913 29 H 0.034 0.966 30 H 0.028 0.972 31 H 0.012 0.988 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.098 -3.548 10.886 12.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 C -0.154 4.154 4 C 0.043 3.957 5 Cl 0.005 6.995 6 N -0.247 5.247 7 C 0.023 3.977 8 N -0.256 5.256 9 C 0.141 3.859 10 N -0.216 5.216 11 C -0.103 4.103 12 C 0.081 3.919 13 C -0.553 4.553 14 H 0.085 0.915 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.729 3.271 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.201 1.201 21 H 0.088 0.912 22 H 0.078 0.922 23 H 0.065 0.935 24 H 0.113 0.887 25 H 0.087 0.913 26 H 0.215 0.785 27 H 0.064 0.936 28 H 0.105 0.895 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.030 0.970 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.077 -3.029 11.007 12.933 hybrid contribution -0.396 -0.319 -0.763 0.917 sum 5.681 -3.348 10.244 12.183 Atomic orbital electron populations 1.21670 0.93962 1.01969 1.02379 1.20339 0.96853 0.89898 1.03479 1.21227 1.02853 1.00338 0.90947 1.21768 0.96001 0.90601 0.87367 1.98388 1.93644 1.77842 1.29623 1.67762 1.15765 1.08966 1.32233 1.24686 0.92125 0.99629 0.81299 1.68765 1.14462 1.11437 1.30919 1.20527 0.86184 0.85992 0.93159 1.60398 1.10601 1.48556 1.01997 1.22226 0.88921 1.00901 0.98292 1.19822 0.87601 0.92826 0.91652 1.21016 1.22722 1.04392 1.07145 0.91543 1.24976 0.95968 0.95144 0.98247 1.69960 1.27502 1.18518 1.37328 0.86501 0.78244 0.80177 0.82162 1.20055 1.21301 1.20148 0.91166 0.92157 0.93525 0.88699 0.91264 0.78456 0.93597 0.89455 0.94694 0.95407 0.97026 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.89 37.16 0.37 -1.76 16 2 C -0.07 -1.00 5.51 -27.88 -0.15 -1.15 16 3 C -0.15 -2.48 5.19 -104.12 -0.54 -3.02 16 4 C 0.21 3.44 7.32 -17.16 -0.13 3.31 16 5 Cl -0.02 -0.31 27.64 -51.86 -1.43 -1.74 16 6 N -0.53 -8.64 10.43 -11.76 -0.12 -8.77 16 7 C 0.31 4.98 12.28 -92.21 -1.13 3.85 16 8 N -0.54 -10.20 9.97 -13.83 -0.14 -10.34 16 9 C 0.38 7.32 5.26 -154.76 -0.81 6.50 16 10 N -0.49 -10.23 3.81 -182.27 -0.69 -10.92 16 11 C 0.04 0.81 9.16 60.07 0.55 1.37 16 12 C 0.20 5.16 4.49 -4.98 -0.02 5.13 16 13 C -0.51 -13.70 8.54 -34.44 -0.29 -14.00 16 14 H 0.07 1.71 7.10 -52.49 -0.37 1.34 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 17 Si 0.90 20.86 29.54 -169.99 -5.02 15.83 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.09 1.47 7.55 -51.93 -0.39 1.08 16 25 H 0.07 0.88 7.04 -51.93 -0.37 0.51 16 26 H 0.20 2.38 8.06 -52.49 -0.42 1.95 16 27 H 0.05 0.74 8.11 -51.93 -0.42 0.32 16 28 H 0.09 1.65 6.90 -51.93 -0.36 1.29 16 29 H 0.03 0.67 8.05 -51.94 -0.42 0.25 16 30 H 0.03 0.77 8.06 -51.92 -0.42 0.35 16 31 H 0.01 0.33 8.10 -51.93 -0.42 -0.09 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 290.79 15.07 4.38 4.38 Total: -1.00 -29.06 290.79 -8.54 -37.60 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -3.99 Total: -2.59 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -2.26 Total: 1.75 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.22 Total: -55.24 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.43 Total: -1.74 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.06 -8.54 -37.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082565351.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.238 kcal (2) G-P(sol) polarization free energy of solvation -29.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.72 seconds