Wall clock time and date at job start Mon Mar 30 2020 06:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31779 * 119.07492 * 2 1 4 4 C 1.32664 * 120.98371 * 180.02562 * 3 2 1 5 5 Cl 1.73598 * 120.41665 * 179.97438 * 4 3 2 6 6 C 1.38320 * 119.16649 * 359.74703 * 4 3 2 7 7 C 1.50694 * 120.83916 * 180.27369 * 6 4 3 8 8 C 1.39524 * 118.31951 * 0.49215 * 6 4 3 9 9 N 1.38565 * 120.52013 * 179.78090 * 8 6 4 10 10 C 1.46896 * 110.99931 * 245.62686 * 9 8 6 11 11 C 1.46904 * 110.99493 * 121.66874 * 9 8 6 12 12 C 1.50703 * 109.46578 * 189.99977 * 11 9 8 13 13 H 1.07995 * 120.00298 * 359.72738 * 12 11 9 14 14 C 1.37880 * 119.99742 * 180.02562 * 12 11 9 15 15 N 1.31517 * 119.99766 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99863 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47073 * 60.00422 * 16 14 12 18 18 H 1.48503 * 109.46868 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47417 * 300.00138 * 16 14 12 20 20 N 1.31745 * 119.07626 * 180.02562 * 2 1 3 21 21 H 1.08993 * 109.47400 * 269.97930 * 1 2 3 22 22 H 1.09000 * 109.46930 * 29.98681 * 1 2 3 23 23 H 1.09003 * 109.46879 * 149.97591 * 1 2 3 24 24 H 1.09004 * 109.47419 * 270.22363 * 7 6 4 25 25 H 1.09005 * 109.47352 * 30.22139 * 7 6 4 26 26 H 1.09000 * 109.47526 * 150.22446 * 7 6 4 27 27 H 1.08997 * 109.46959 * 289.96101 * 10 9 8 28 28 H 1.08990 * 109.47541 * 49.96349 * 10 9 8 29 29 H 1.09002 * 109.46900 * 169.96812 * 10 9 8 30 30 H 1.09007 * 109.46785 * 70.00443 * 11 9 8 31 31 H 1.08989 * 109.47383 * 310.00092 * 11 9 8 32 32 H 0.97000 * 119.99202 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1474 1.1517 0.0000 4 6 3.4733 1.1959 -0.0005 5 17 4.3019 2.7214 -0.0012 6 6 4.1873 0.0112 0.0043 7 6 5.6942 0.0175 0.0101 8 6 3.4770 -1.1897 -0.0011 9 7 4.1461 -2.4030 -0.0011 10 6 3.9095 -3.1346 -1.2528 11 6 3.7653 -3.2142 1.1629 12 6 4.6815 -4.4063 1.2657 13 1 5.4651 -4.5496 0.5365 14 6 4.5154 -5.3174 2.2872 15 7 3.5570 -5.1462 3.1715 16 14 5.6505 -6.7954 2.4142 17 1 7.0522 -6.3309 2.5723 18 1 5.2657 -7.6154 3.5910 19 1 5.5366 -7.6146 1.1809 20 7 2.1473 -1.1514 -0.0005 21 1 -0.3634 -0.0004 1.0276 22 1 -0.3633 0.8901 -0.5136 23 1 -0.3633 -0.8898 -0.5142 24 1 6.0615 0.0212 -1.0162 25 1 6.0519 0.9079 0.5272 26 1 6.0593 -0.8721 0.5234 27 1 2.8759 -3.4792 -1.2824 28 1 4.0970 -2.4751 -2.1001 29 1 4.5801 -3.9923 -1.3046 30 1 2.7366 -3.5555 1.0470 31 1 3.8488 -2.6127 2.0679 32 1 3.4405 -5.7870 3.8903 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082565352.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:35 Heat of formation + Delta-G solvation = 26.752677 kcal Electronic energy + Delta-G solvation = -16753.161340 eV Core-core repulsion = 13967.179611 eV Total energy + Delta-G solvation = -2785.981729 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.083 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.41596 -38.74378 -37.98773 -35.18626 -34.81288 -33.56587 -31.15432 -29.43969 -27.59911 -26.70860 -25.25572 -23.34876 -22.35897 -19.43041 -18.64474 -17.93096 -17.04750 -16.46204 -16.04293 -15.59797 -15.37164 -15.09980 -14.55709 -14.44585 -14.04999 -13.51078 -13.48239 -13.32229 -13.19536 -13.01186 -12.81801 -12.67856 -12.58333 -12.44956 -12.11133 -11.89855 -11.52930 -11.28608 -10.65576 -10.54616 -10.08441 -9.62062 -8.23306 -6.35258 -0.32988 -0.30814 0.42067 1.44121 1.47478 1.55280 2.35696 2.42366 2.64115 2.93447 3.10922 3.29139 3.62476 3.85618 4.15347 4.32701 4.59380 4.64995 4.67959 4.71275 4.77605 4.90891 4.93477 5.07211 5.11102 5.19756 5.35784 5.59230 5.69477 5.89397 5.94491 6.43124 6.77712 6.87364 7.34688 8.88448 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.027145 B = 0.005876 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.264903 B = 4763.827622 C = 5277.366000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.323 3.677 3 N -0.529 5.529 4 C 0.214 3.786 5 Cl 0.010 6.990 6 C -0.161 4.161 7 C -0.093 4.093 8 C 0.350 3.650 9 N -0.488 5.488 10 C 0.051 3.949 11 C 0.226 3.774 12 C -0.526 4.526 13 H 0.076 0.924 14 C 0.003 3.997 15 N -0.935 5.935 16 Si 0.976 3.024 17 H -0.265 1.265 18 H -0.287 1.287 19 H -0.264 1.264 20 N -0.563 5.563 21 H 0.095 0.905 22 H 0.107 0.893 23 H 0.091 0.909 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.021 0.979 28 H 0.074 0.926 29 H 0.085 0.915 30 H -0.022 1.022 31 H -0.009 1.009 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.217 11.865 -8.302 14.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.055 3.945 3 N -0.247 5.247 4 C 0.041 3.959 5 Cl 0.039 6.961 6 C -0.168 4.168 7 C -0.151 4.151 8 C 0.113 3.887 9 N -0.212 5.212 10 C -0.095 4.095 11 C 0.101 3.899 12 C -0.565 4.565 13 H 0.094 0.906 14 C -0.195 4.195 15 N -0.575 5.575 16 Si 0.800 3.200 17 H -0.190 1.190 18 H -0.212 1.212 19 H -0.188 1.188 20 N -0.282 5.282 21 H 0.114 0.886 22 H 0.126 0.874 23 H 0.110 0.890 24 H 0.113 0.887 25 H 0.104 0.896 26 H 0.094 0.906 27 H 0.039 0.961 28 H 0.092 0.908 29 H 0.103 0.897 30 H -0.005 1.005 31 H 0.009 0.991 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.272 12.001 -8.123 14.494 hybrid contribution 0.304 -0.828 0.522 1.025 sum 0.032 11.173 -7.601 13.513 Atomic orbital electron populations 1.20702 0.82612 1.05321 1.04951 1.23748 0.99464 0.81429 0.89855 1.67711 1.08436 1.31251 1.17256 1.21987 0.89725 0.88470 0.95729 1.98394 1.74845 1.26974 1.95913 1.21353 1.01171 0.90366 1.03916 1.20638 0.86221 1.04061 1.04155 1.20611 0.86451 0.93162 0.88511 1.60256 1.52601 1.02425 1.05883 1.22191 1.00056 0.98554 0.88706 1.19318 0.94088 0.91031 0.85442 1.21369 1.15887 1.06877 1.12319 0.90623 1.25968 0.97106 1.01505 0.94938 1.70113 1.33446 1.38090 1.15853 0.85339 0.78854 0.78062 0.77790 1.18975 1.21210 1.18842 1.68587 1.11366 1.32027 1.16209 0.88637 0.87405 0.89018 0.88704 0.89641 0.90645 0.96060 0.90774 0.89680 1.00460 0.99086 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.89 10.32 71.24 0.73 -1.15 16 2 C 0.32 11.00 7.64 138.77 1.06 12.06 16 3 N -0.53 -17.48 10.33 -179.01 -1.85 -19.33 16 4 C 0.21 6.78 7.32 84.59 0.62 7.40 16 5 Cl 0.01 0.25 27.63 -2.72 -0.08 0.17 16 6 C -0.16 -5.51 5.93 -19.54 -0.12 -5.63 16 7 C -0.09 -2.62 9.46 71.23 0.67 -1.95 16 8 C 0.35 14.16 5.23 133.12 0.70 14.85 16 9 N -0.49 -21.26 3.81 -730.59 -2.79 -24.05 16 10 C 0.05 1.96 9.17 127.69 1.17 3.13 16 11 C 0.23 12.16 4.45 85.56 0.38 12.54 16 12 C -0.53 -28.94 8.60 25.60 0.22 -28.72 16 13 H 0.08 3.93 7.09 -2.91 -0.02 3.91 16 14 C 0.00 0.19 5.46 84.66 0.46 0.65 16 15 N -0.94 -56.15 13.29 21.45 0.28 -55.86 16 16 Si 0.98 42.99 29.54 68.60 2.03 45.01 16 17 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 18 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 20 N -0.56 -22.73 9.90 -185.49 -1.84 -24.56 16 21 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 22 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.08 2.04 7.03 -2.38 -0.02 2.02 16 26 H 0.07 2.46 7.56 -2.39 -0.02 2.44 16 27 H 0.02 0.85 8.06 -2.39 -0.02 0.83 16 28 H 0.07 2.36 8.05 -2.39 -0.02 2.34 16 29 H 0.08 3.20 7.04 -2.39 -0.02 3.18 16 30 H -0.02 -1.34 8.01 -2.38 -0.02 -1.36 16 31 H -0.01 -0.54 8.05 -2.39 -0.02 -0.56 16 32 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -65.27 291.18 2.79 -62.48 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: 1.12 Total: 2.96 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 5.90 Total: 13.18 kcal Atomic # 7 Polarization: -117.62 SS G_CDS: -6.19 Total: -123.80 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -0.08 Total: 0.17 kcal Total: -65.27 2.79 -62.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082565352.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.229 kcal (2) G-P(sol) polarization free energy of solvation -65.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds