Wall clock time and date at job start Mon Mar 30 2020 06:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35923 * 117.00183 * 2 1 4 4 C 1.38741 * 120.04008 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.95598 * 179.97438 * 4 3 2 6 6 C 1.38390 * 120.04078 * 0.24994 * 5 4 3 7 7 Cl 1.73600 * 119.95474 * 179.72518 * 6 5 4 8 8 C 1.38343 * 120.08297 * 359.49336 * 6 5 4 9 9 C 1.38164 * 120.04484 * 0.50733 * 8 6 5 10 10 C 1.50702 * 120.02065 * 179.77191 * 9 8 6 11 11 C 1.52993 * 109.47291 * 112.84484 * 10 9 8 12 12 N 1.46897 * 109.46993 * 352.83715 * 10 9 8 13 13 C 1.50701 * 109.46797 * 232.84033 * 10 9 8 14 14 H 1.07992 * 120.00377 * 245.39216 * 13 10 9 15 15 C 1.37880 * 119.99875 * 65.39563 * 13 10 9 16 16 N 1.31516 * 119.99842 * 191.36599 * 15 13 10 17 17 Si 1.86801 * 120.00272 * 11.36456 * 15 13 10 18 18 H 1.48503 * 109.46808 * 84.40690 * 17 15 13 19 19 H 1.48499 * 109.47546 * 204.40823 * 17 15 13 20 20 H 1.48501 * 109.46936 * 324.41459 * 17 15 13 21 21 H 1.09002 * 109.47495 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47014 * 299.99358 * 1 2 3 23 23 H 1.08997 * 109.47604 * 59.99590 * 1 2 3 24 24 H 1.08003 * 120.02279 * 359.97438 * 4 3 2 25 25 H 1.07996 * 119.97619 * 179.97438 * 5 4 3 26 26 H 1.08000 * 119.97574 * 180.25777 * 8 6 5 27 27 H 1.09000 * 109.47647 * 59.99475 * 11 10 9 28 28 H 1.09005 * 109.47238 * 179.97438 * 11 10 9 29 29 H 1.09008 * 109.47006 * 299.99362 * 11 10 9 30 30 H 1.00905 * 110.99800 * 180.55805 * 12 10 9 31 31 H 1.00894 * 111.00451 * 304.51478 * 12 10 9 32 32 H 0.97005 * 120.00162 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2913 2.3752 0.0005 5 6 1.9202 3.6049 0.0011 6 6 3.3023 3.6763 -0.0042 7 17 4.0904 5.2231 -0.0107 8 6 4.0565 2.5166 0.0007 9 6 3.4311 1.2846 0.0001 10 6 4.2533 0.0216 0.0002 11 6 4.0617 -0.7116 1.3292 12 7 5.6721 0.3610 -0.1718 13 6 3.8085 -0.8673 -1.1326 14 1 3.3470 -1.8206 -0.9217 15 6 3.9909 -0.4635 -2.4382 16 7 3.4102 -1.1220 -3.4174 17 14 5.0627 1.0190 -2.8164 18 1 6.4849 0.5970 -2.8848 19 1 4.6567 1.6040 -4.1195 20 1 4.8987 2.0345 -1.7453 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 0.2127 2.3199 0.0005 25 1 1.3330 4.5113 0.0011 26 1 5.1350 2.5743 0.0008 27 1 3.0089 -0.9635 1.4568 28 1 4.6560 -1.6254 1.3290 29 1 4.3834 -0.0687 2.1486 30 1 6.2438 -0.4703 -0.1843 31 1 5.8140 0.9100 -1.0064 32 1 3.5388 -0.8381 -4.3360 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084423365.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:31 Heat of formation + Delta-G solvation = -12.072145 kcal Electronic energy + Delta-G solvation = -17722.642748 eV Core-core repulsion = 14902.684697 eV Total energy + Delta-G solvation = -2819.958051 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.32146 -38.65569 -37.78116 -36.68126 -34.02193 -31.42618 -31.07644 -29.51878 -27.92632 -27.24258 -24.03569 -22.95997 -21.12895 -19.44328 -18.54014 -17.61262 -17.07722 -16.85692 -16.40371 -15.86016 -15.39270 -15.03525 -14.76419 -14.38393 -14.17665 -13.95359 -13.40505 -13.11760 -12.90158 -12.77894 -12.52283 -12.46595 -12.25688 -12.02004 -11.93511 -11.66901 -11.36532 -11.11583 -10.77477 -9.73410 -9.22480 -8.78547 -8.32020 -6.31367 0.34236 0.43086 1.20510 1.27931 1.37638 1.37788 2.26350 2.63245 2.81103 3.02625 3.75044 3.92954 4.04453 4.30383 4.41695 4.48475 4.49616 4.64536 4.76227 4.78894 4.89308 5.00449 5.20105 5.23516 5.36777 5.39824 5.54356 5.62456 5.82426 6.10845 6.44467 6.66182 6.72109 6.79874 7.32004 8.83156 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.017491 B = 0.011933 C = 0.009374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.435267 B = 2345.891071 C = 2986.126387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.304 6.304 3 C 0.139 3.861 4 C -0.210 4.210 5 C -0.080 4.080 6 C -0.095 4.095 7 Cl -0.077 7.077 8 C -0.071 4.071 9 C -0.097 4.097 10 C 0.244 3.756 11 C -0.107 4.107 12 N -0.836 5.836 13 C -0.502 4.502 14 H 0.039 0.961 15 C 0.028 3.972 16 N -0.935 5.935 17 Si 0.880 3.120 18 H -0.272 1.272 19 H -0.319 1.319 20 H -0.192 1.192 21 H 0.103 0.897 22 H 0.075 0.925 23 H 0.052 0.948 24 H 0.160 0.840 25 H 0.157 0.843 26 H 0.139 0.861 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.342 0.658 31 H 0.310 0.690 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.763 9.255 8.362 13.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.216 6.216 3 C 0.092 3.908 4 C -0.229 4.229 5 C -0.098 4.098 6 C -0.121 4.121 7 Cl -0.048 7.048 8 C -0.090 4.090 9 C -0.099 4.099 10 C 0.153 3.847 11 C -0.165 4.165 12 N -0.374 5.374 13 C -0.542 4.542 14 H 0.057 0.943 15 C -0.171 4.171 16 N -0.575 5.575 17 Si 0.711 3.289 18 H -0.198 1.198 19 H -0.249 1.249 20 H -0.117 1.117 21 H 0.122 0.878 22 H 0.094 0.906 23 H 0.071 0.929 24 H 0.177 0.823 25 H 0.175 0.825 26 H 0.156 0.844 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.155 0.845 31 H 0.130 0.870 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.714 9.563 8.874 13.564 hybrid contribution 0.233 -0.165 -1.919 1.940 sum -3.481 9.398 6.955 12.199 Atomic orbital electron populations 1.23269 0.78244 1.04678 1.01722 1.86395 1.21766 1.26127 1.87328 1.19078 0.91927 0.85219 0.94592 1.21388 1.01207 0.90930 1.09363 1.20950 0.91867 0.98564 0.98436 1.20812 0.93378 0.86101 1.11851 1.98306 1.80997 1.28095 1.97402 1.20815 1.00674 0.89790 0.97713 1.19752 0.91789 0.95482 1.02896 1.17523 0.84345 0.88504 0.94356 1.21497 1.00969 0.98956 0.95043 1.59741 1.08776 1.25844 1.43088 1.21593 1.38582 1.03760 0.90267 0.94322 1.25618 0.96617 0.98304 0.96512 1.70084 1.44218 1.43210 0.99996 0.87233 0.79759 0.83889 0.78066 1.19822 1.24855 1.11658 0.87846 0.90650 0.92934 0.82303 0.82494 0.84359 0.92842 0.93206 0.92836 0.84453 0.86980 0.93188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.56 16 2 O -0.30 -12.25 7.38 -92.68 -0.68 -12.94 16 3 C 0.14 5.48 6.29 22.50 0.14 5.62 16 4 C -0.21 -6.65 9.04 22.36 0.20 -6.45 16 5 C -0.08 -2.38 9.82 22.28 0.22 -2.16 16 6 C -0.09 -3.18 6.32 22.33 0.14 -3.04 16 7 Cl -0.08 -2.23 28.95 -2.72 -0.08 -2.30 16 8 C -0.07 -2.73 6.57 22.28 0.15 -2.58 16 9 C -0.10 -4.08 3.48 -19.77 -0.07 -4.15 16 10 C 0.24 10.82 0.66 2.03 0.00 10.82 16 11 C -0.11 -4.24 8.56 71.98 0.62 -3.62 16 12 N -0.84 -34.38 7.38 -157.52 -1.16 -35.54 16 13 C -0.50 -27.09 7.10 25.60 0.18 -26.90 16 14 H 0.04 2.36 7.99 -2.91 -0.02 2.33 16 15 C 0.03 1.59 5.39 84.66 0.46 2.04 16 16 N -0.94 -57.56 13.96 21.45 0.30 -57.26 16 17 Si 0.88 42.10 23.96 68.60 1.64 43.75 16 18 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.32 -16.20 7.11 99.48 0.71 -15.49 16 20 H -0.19 -8.27 2.65 99.48 0.26 -8.01 16 21 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 22 H 0.08 1.64 7.66 -2.39 -0.02 1.62 16 23 H 0.05 1.43 7.66 -2.39 -0.02 1.41 16 24 H 0.16 3.91 6.30 -2.91 -0.02 3.89 16 25 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 26 H 0.14 5.29 6.23 -2.91 -0.02 5.27 16 27 H 0.05 2.14 6.74 -2.39 -0.02 2.13 16 28 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.34 13.47 8.99 -89.69 -0.81 12.67 16 31 H 0.31 13.05 2.44 -89.70 -0.22 12.83 16 32 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -64.58 266.33 2.86 -61.73 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: -0.31 Total: 31.45 kcal Atomic # 6 Polarization: -32.02 SS G_CDS: 3.15 Total: -28.87 kcal Atomic # 7 Polarization: -91.94 SS G_CDS: -0.86 Total: -92.80 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.68 Total: -12.94 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.64 Total: 43.75 kcal Atomic # 17 Polarization: -2.23 SS G_CDS: -0.08 Total: -2.30 kcal Total: -64.58 2.86 -61.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084423365.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.657 kcal (2) G-P(sol) polarization free energy of solvation -64.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds