Wall clock time and date at job start Mon Mar 30 2020 06:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35927 * 116.99779 * 2 1 4 4 C 1.38739 * 120.03991 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.95361 * 179.72669 * 4 3 2 6 6 C 1.38390 * 120.04336 * 0.25306 * 5 4 3 7 7 Cl 1.73605 * 119.95603 * 180.02562 * 6 5 4 8 8 C 1.38343 * 120.08469 * 0.02562 * 6 5 4 9 9 C 1.38164 * 120.04281 * 359.97438 * 8 6 5 10 10 C 1.50697 * 120.02201 * 180.02562 * 9 8 6 11 11 C 1.53004 * 109.47069 * 239.99872 * 10 9 8 12 12 N 1.46898 * 109.47114 * 359.97438 * 10 9 8 13 13 C 1.50695 * 109.47421 * 119.99982 * 10 9 8 14 14 H 1.08007 * 119.99986 * 2.06101 * 13 10 9 15 15 C 1.37875 * 120.00271 * 182.06239 * 13 10 9 16 16 N 1.31514 * 119.99956 * 1.96048 * 15 13 10 17 17 Si 1.86799 * 120.00269 * 181.95924 * 15 13 10 18 18 H 1.48503 * 109.47319 * 84.99345 * 17 15 13 19 19 H 1.48499 * 109.47429 * 204.99395 * 17 15 13 20 20 H 1.48502 * 109.47254 * 324.99484 * 17 15 13 21 21 H 1.08999 * 109.46865 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47205 * 300.00433 * 1 2 3 23 23 H 1.08998 * 109.47343 * 60.00697 * 1 2 3 24 24 H 1.07995 * 120.02780 * 359.97438 * 4 3 2 25 25 H 1.08007 * 119.97839 * 180.27860 * 5 4 3 26 26 H 1.08000 * 119.98013 * 179.97438 * 8 6 5 27 27 H 1.09003 * 109.46704 * 53.41238 * 11 10 9 28 28 H 1.09004 * 109.47129 * 173.40812 * 11 10 9 29 29 H 1.09000 * 109.47214 * 293.41433 * 11 10 9 30 30 H 1.00899 * 111.00184 * 60.00074 * 12 10 9 31 31 H 1.00904 * 111.00333 * 183.95599 * 12 10 9 32 32 H 0.97003 * 119.99873 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2912 2.3752 -0.0005 5 6 1.9201 3.6049 0.0052 6 6 3.3021 3.6764 0.0061 7 17 4.0902 5.2233 0.0140 8 6 4.0565 2.5168 0.0008 9 6 3.4311 1.2848 -0.0049 10 6 4.2533 0.0219 -0.0100 11 6 3.9277 -0.7936 -1.2631 12 7 5.6811 0.3671 -0.0085 13 6 3.9315 -0.7921 1.2166 14 1 3.1802 -0.4473 1.9118 15 6 4.5961 -1.9771 1.4516 16 7 5.5379 -2.3778 0.6257 17 14 4.1589 -3.0134 2.9430 18 1 3.0057 -3.8900 2.6159 19 1 5.3249 -3.8507 3.3231 20 1 3.7984 -2.1233 4.0758 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3634 0.5137 -0.8900 24 1 0.2127 2.3199 -0.0014 25 1 1.3328 4.5114 0.0093 26 1 5.1349 2.5745 0.0012 27 1 4.0489 -0.1664 -2.1463 28 1 4.6036 -1.6463 -1.3275 29 1 2.8986 -1.1488 -1.2081 30 1 5.9218 0.9065 0.8096 31 1 6.2535 -0.4610 -0.0769 32 1 6.0057 -3.2113 0.7913 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084423366.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:35 Heat of formation + Delta-G solvation = -18.437707 kcal Electronic energy + Delta-G solvation = -17317.000627 eV Core-core repulsion = 14496.766544 eV Total energy + Delta-G solvation = -2820.234083 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.77591 -37.14697 -36.06108 -35.13815 -31.72684 -29.55792 -29.41882 -27.23111 -26.71764 -25.16364 -22.55317 -21.47117 -19.39338 -17.50999 -16.56496 -15.66726 -15.53186 -15.12271 -14.68679 -13.99407 -13.86632 -13.36029 -13.10479 -12.77202 -12.22814 -12.12921 -11.56288 -11.43577 -11.25572 -11.07863 -10.84633 -10.75560 -10.59429 -10.42271 -10.26072 -10.01413 -9.75321 -9.43047 -8.60404 -8.25913 -7.45922 -7.12479 -6.01005 -4.14896 1.82134 1.86956 2.63179 3.25667 3.32377 3.35780 3.89286 4.22353 4.40346 5.16001 5.19550 5.29320 5.43072 5.47971 5.69219 5.79175 5.91778 6.21140 6.38998 6.47167 6.64438 6.79779 6.83319 7.03476 7.22683 7.31402 7.55107 7.82937 7.93946 8.03430 8.19973 8.73958 8.99472 9.18586 9.55160 10.94946 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.022369 B = 0.007952 C = 0.006750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.459388 B = 3520.257553 C = 4146.848911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.277 6.277 3 C 0.139 3.861 4 C -0.212 4.212 5 C -0.097 4.097 6 C -0.076 4.076 7 Cl -0.095 7.095 8 C -0.070 4.070 9 C -0.049 4.049 10 C 0.273 3.727 11 C -0.118 4.118 12 N -0.850 5.850 13 C -0.516 4.516 14 H 0.054 0.946 15 C 0.067 3.933 16 N -0.895 5.895 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.277 1.277 21 H 0.094 0.906 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.126 0.874 25 H 0.122 0.878 26 H 0.146 0.854 27 H 0.012 0.988 28 H 0.075 0.925 29 H 0.046 0.954 30 H 0.312 0.688 31 H 0.361 0.639 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.035 7.677 -1.477 10.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.189 6.189 3 C 0.092 3.908 4 C -0.231 4.231 5 C -0.116 4.116 6 C -0.102 4.102 7 Cl -0.066 7.066 8 C -0.089 4.089 9 C -0.051 4.051 10 C 0.181 3.819 11 C -0.176 4.176 12 N -0.382 5.382 13 C -0.556 4.556 14 H 0.072 0.928 15 C -0.134 4.134 16 N -0.536 5.536 17 Si 0.723 3.277 18 H -0.206 1.206 19 H -0.214 1.214 20 H -0.202 1.202 21 H 0.112 0.888 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.144 0.856 25 H 0.140 0.860 26 H 0.164 0.836 27 H 0.031 0.969 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.121 0.879 31 H 0.179 0.821 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.904 7.828 -2.197 10.667 hybrid contribution -0.547 -0.868 1.782 2.056 sum -7.451 6.961 -0.415 10.205 Atomic orbital electron populations 1.23002 0.80689 1.03351 1.00298 1.86476 1.19063 1.25695 1.87675 1.18973 0.92128 0.84086 0.95598 1.21017 0.99537 0.91859 1.10652 1.20525 0.92280 0.97378 1.01431 1.20766 0.92570 0.85887 1.10997 1.98307 1.81176 1.29707 1.97447 1.20905 1.01097 0.89010 0.97895 1.19911 0.90635 0.96587 0.97945 1.17172 0.84999 0.85585 0.94111 1.21655 1.01099 1.00121 0.94703 1.59517 1.06359 1.28280 1.43995 1.21662 1.21118 1.05737 1.07091 0.92792 1.24912 0.94939 0.97113 0.96461 1.69642 1.24080 1.23067 1.36766 0.86568 0.77871 0.80248 0.83012 1.20648 1.21378 1.20181 0.88761 0.93385 0.93485 0.85606 0.85997 0.83612 0.96909 0.90649 0.93503 0.87881 0.82118 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 101.05 0.99 1.30 16 2 O -0.28 -5.46 7.20 -19.51 -0.14 -5.60 16 3 C 0.14 2.74 6.16 -39.23 -0.24 2.50 16 4 C -0.21 -3.49 9.04 -39.44 -0.36 -3.85 16 5 C -0.10 -1.56 9.82 -39.57 -0.39 -1.95 16 6 C -0.08 -1.32 6.32 -39.49 -0.25 -1.57 16 7 Cl -0.09 -1.45 28.95 -51.86 -1.50 -2.95 16 8 C -0.07 -1.38 8.95 -39.57 -0.35 -1.74 16 9 C -0.05 -1.06 4.74 -104.48 -0.50 -1.56 16 10 C 0.27 6.54 0.65 -133.91 -0.09 6.46 16 11 C -0.12 -2.85 8.14 37.16 0.30 -2.54 16 12 N -0.85 -19.73 7.72 -1.14 -0.01 -19.74 16 13 C -0.52 -13.49 7.10 -34.44 -0.24 -13.74 16 14 H 0.05 1.47 7.44 -52.48 -0.39 1.08 16 15 C 0.07 1.75 5.23 -17.82 -0.09 1.66 16 16 N -0.90 -23.71 9.68 55.43 0.54 -23.17 16 17 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 22 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 23 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 24 H 0.13 1.69 6.30 -52.49 -0.33 1.36 16 25 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 26 H 0.15 2.85 6.50 -52.49 -0.34 2.51 16 27 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 1.95 6.49 -51.93 -0.34 1.62 16 29 H 0.05 1.12 6.35 -51.93 -0.33 0.79 16 30 H 0.31 7.00 8.04 -39.29 -0.32 6.68 16 31 H 0.36 8.97 6.77 -39.29 -0.27 8.70 16 32 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 276.24 15.07 4.16 4.16 Total: -1.00 -27.01 276.24 -6.70 -33.71 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -3.51 Total: 12.75 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -1.22 Total: -15.02 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.53 Total: -42.91 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.14 Total: -5.60 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -1.50 Total: -2.95 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.01 -6.70 -33.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084423366.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.270 kcal (2) G-P(sol) polarization free energy of solvation -27.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds