Wall clock time and date at job start Mon Mar 30 2020 06:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.36028 * 116.99909 * 2 1 4 4 C 1.38494 * 120.06933 * 269.97631 * 3 2 1 5 5 C 1.50704 * 119.98243 * 0.02562 * 4 3 2 6 6 C 1.38288 * 120.03322 * 180.02562 * 4 3 2 7 7 C 1.38359 * 120.15924 * 0.02562 * 6 4 3 8 8 Cl 1.73605 * 119.92514 * 179.97438 * 7 6 4 9 9 C 1.38312 * 120.14101 * 359.72312 * 7 6 4 10 10 C 1.38724 * 119.96525 * 0.55126 * 9 7 6 11 11 N 1.39966 * 120.08007 * 179.72250 * 10 9 7 12 12 C 1.46499 * 120.00127 * 359.73008 * 11 10 9 13 13 C 1.50701 * 109.46992 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47432 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46890 * 120.00210 * 17 15 13 20 20 H 1.48501 * 109.47062 * 240.00257 * 17 15 13 21 21 H 1.09000 * 109.46844 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46782 * 299.99875 * 1 2 3 23 23 H 1.08995 * 109.46987 * 60.00210 * 1 2 3 24 24 H 1.09008 * 109.46531 * 89.99936 * 5 4 3 25 25 H 1.08992 * 109.47132 * 209.99866 * 5 4 3 26 26 H 1.09000 * 109.46996 * 330.00275 * 5 4 3 27 27 H 1.07987 * 119.91398 * 180.02562 * 6 4 3 28 28 H 1.08001 * 120.01749 * 180.27957 * 9 7 6 29 29 H 0.97000 * 119.99452 * 179.72315 * 11 10 9 30 30 H 1.09002 * 109.47391 * 59.99748 * 12 11 10 31 31 H 1.09001 * 109.46813 * 299.99805 * 12 11 10 32 32 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0466 1.2120 0.0000 4 6 2.3621 1.8301 -1.1986 5 6 2.0205 1.1598 -2.5044 6 6 2.9903 3.0620 -1.1977 7 6 3.3061 3.6804 -0.0009 8 17 4.0954 5.2267 -0.0069 9 6 2.9895 3.0718 1.2000 10 6 2.3644 1.8334 1.2056 11 7 2.0482 1.2126 2.4196 12 6 2.3828 1.8680 3.6864 13 6 1.9389 0.9984 4.8344 14 1 1.4564 0.0520 4.6398 15 6 2.1499 1.4105 6.1331 16 7 2.7380 2.5627 6.3701 17 14 1.6004 0.3322 7.5561 18 1 0.9702 -0.9036 7.0261 19 1 2.7775 -0.0297 8.3861 20 1 0.6173 1.0725 8.3872 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.0226 1.4651 -2.8193 25 1 2.7462 1.4516 -3.2633 26 1 2.0454 0.0778 -2.3748 27 1 3.2351 3.5424 -2.1333 28 1 3.2329 3.5584 2.1330 29 1 1.6075 0.3486 2.4221 30 1 1.8747 2.8307 3.7428 31 1 3.4604 2.0221 3.7423 32 1 2.8861 2.8528 7.2838 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084914496.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:11 Heat of formation + Delta-G solvation = -48.898075 kcal Electronic energy + Delta-G solvation = -16474.099679 eV Core-core repulsion = 13652.544736 eV Total energy + Delta-G solvation = -2821.554943 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.21569 -38.44874 -37.47585 -36.77595 -34.77933 -32.72524 -30.83201 -28.58865 -28.05662 -27.07101 -24.72615 -23.08661 -21.70196 -19.40557 -18.43907 -17.73560 -17.37128 -16.64059 -16.53083 -15.82362 -15.22818 -15.03556 -14.81032 -14.64782 -14.37511 -13.94481 -13.65791 -13.52370 -12.98768 -12.96040 -12.88560 -12.61897 -12.42663 -12.21134 -12.11743 -11.85842 -11.46478 -10.98293 -10.87604 -10.55847 -9.47976 -8.33950 -8.28673 -6.48313 0.08773 0.52121 1.13731 1.39357 1.39843 1.53180 2.30592 2.42722 2.74881 3.00617 3.03069 3.81091 4.21538 4.30209 4.33394 4.50807 4.52978 4.62452 4.68325 4.81538 4.87938 4.92301 5.04026 5.22561 5.25613 5.31993 5.45328 5.51836 5.67154 5.82956 6.28327 6.51931 6.70785 7.02266 7.24670 8.78027 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.020015 B = 0.006181 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.599512 B = 4529.042635 C = 5840.238779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.337 6.337 3 C -0.002 4.002 4 C -0.041 4.041 5 C -0.104 4.104 6 C -0.168 4.168 7 C 0.015 3.985 8 Cl -0.070 7.070 9 C -0.214 4.214 10 C 0.206 3.794 11 N -0.723 5.723 12 C 0.271 3.729 13 C -0.558 4.558 14 H 0.070 0.930 15 C 0.011 3.989 16 N -0.925 5.925 17 Si 0.978 3.022 18 H -0.261 1.261 19 H -0.277 1.277 20 H -0.275 1.275 21 H 0.114 0.886 22 H 0.029 0.971 23 H 0.061 0.939 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.159 0.841 28 H 0.111 0.889 29 H 0.400 0.600 30 H -0.005 1.005 31 H -0.008 1.008 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.974 -1.444 -16.511 16.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.253 6.253 3 C -0.051 4.051 4 C -0.043 4.043 5 C -0.161 4.161 6 C -0.189 4.189 7 C -0.012 4.012 8 Cl -0.041 7.041 9 C -0.238 4.238 10 C 0.097 3.903 11 N -0.347 5.347 12 C 0.148 3.852 13 C -0.595 4.595 14 H 0.088 0.912 15 C -0.189 4.189 16 N -0.564 5.564 17 Si 0.802 3.198 18 H -0.185 1.185 19 H -0.202 1.202 20 H -0.201 1.201 21 H 0.133 0.867 22 H 0.048 0.952 23 H 0.079 0.921 24 H 0.105 0.895 25 H 0.108 0.892 26 H 0.091 0.909 27 H 0.177 0.823 28 H 0.129 0.871 29 H 0.235 0.765 30 H 0.012 0.988 31 H 0.010 0.990 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.717 -1.273 -16.149 16.426 hybrid contribution -0.237 -0.010 1.442 1.461 sum -2.955 -1.283 -14.707 15.056 Atomic orbital electron populations 1.23198 0.78655 1.04350 1.00677 1.86053 1.20770 1.24324 1.94199 1.18103 1.06698 0.89853 0.90438 1.20136 0.95827 0.93061 0.95270 1.20760 1.03123 1.00613 0.91586 1.20737 1.05484 0.95934 0.96734 1.20653 0.98342 0.87878 0.94372 1.98338 1.78813 1.27965 1.98956 1.20369 1.08921 0.96708 0.97829 1.18439 0.93484 0.91435 0.86950 1.45153 1.64009 1.22883 1.02703 1.18632 0.93626 0.92546 0.80347 1.21560 1.40713 1.05870 0.91406 0.91235 1.25914 0.94542 0.96598 1.01886 1.70082 1.42606 1.21874 1.21819 0.85201 0.78108 0.78589 0.77900 1.18472 1.20213 1.20084 0.86744 0.95231 0.92061 0.89494 0.89177 0.90916 0.82332 0.87065 0.76507 0.98764 0.98981 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.13 113.37 1.26 1.87 16 2 O -0.34 -10.39 8.70 -93.86 -0.82 -11.21 16 3 C 0.00 -0.08 5.71 22.59 0.13 0.05 16 4 C -0.04 -1.13 5.89 -19.79 -0.12 -1.25 16 5 C -0.10 -1.93 9.79 71.24 0.70 -1.23 16 6 C -0.17 -4.56 9.48 22.31 0.21 -4.35 16 7 C 0.01 0.49 6.32 22.32 0.14 0.63 16 8 Cl -0.07 -2.06 28.95 -2.72 -0.08 -2.14 16 9 C -0.21 -8.54 9.09 22.40 0.20 -8.34 16 10 C 0.21 8.28 6.67 38.22 0.25 8.54 16 11 N -0.72 -32.45 5.72 -342.69 -1.96 -34.41 16 12 C 0.27 14.53 4.67 85.63 0.40 14.93 16 13 C -0.56 -30.92 9.28 25.60 0.24 -30.68 16 14 H 0.07 3.67 7.60 -2.91 -0.02 3.65 16 15 C 0.01 0.59 5.46 84.66 0.46 1.05 16 16 N -0.93 -54.56 13.29 21.45 0.28 -54.28 16 17 Si 0.98 42.83 29.54 68.60 2.03 44.86 16 18 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 19 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 21 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 22 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.09 1.31 8.14 -2.38 -0.02 1.30 16 25 H 0.09 1.28 8.08 -2.39 -0.02 1.27 16 26 H 0.07 1.40 7.52 -2.39 -0.02 1.38 16 27 H 0.16 3.26 8.06 -2.92 -0.02 3.24 16 28 H 0.11 4.99 6.74 -2.91 -0.02 4.97 16 29 H 0.40 17.04 7.68 -92.71 -0.71 16.33 16 30 H -0.01 -0.31 7.94 -2.39 -0.02 -0.33 16 31 H -0.01 -0.45 7.96 -2.39 -0.02 -0.46 16 32 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -62.58 293.47 3.76 -58.83 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.42 Total: 17.11 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: 3.88 Total: -18.77 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -1.68 Total: -88.69 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -0.82 Total: -11.21 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -0.08 Total: -2.14 kcal Total: -62.58 3.76 -58.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084914496.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.931 kcal (2) G-P(sol) polarization free energy of solvation -62.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds