Wall clock time and date at job start Mon Mar 30 2020 07:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46898 * 109.47112 * 2 1 4 4 C 1.46899 * 110.99902 * 198.87946 * 3 2 1 5 5 C 1.50700 * 109.47188 * 66.04143 * 4 3 2 6 6 H 1.07995 * 120.00424 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99591 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00163 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99853 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46653 * 89.99932 * 9 7 5 11 11 H 1.48494 * 109.47488 * 210.00145 * 9 7 5 12 12 H 1.48502 * 109.47134 * 330.00295 * 9 7 5 13 13 C 1.38532 * 111.00390 * 74.91897 * 3 2 1 14 14 N 1.32986 * 120.52145 * 58.96400 * 13 3 2 15 15 C 1.31872 * 120.67728 * 180.02562 * 14 13 3 16 16 Cl 1.73595 * 119.10676 * 179.97438 * 15 14 13 17 17 N 1.31929 * 121.79330 * 359.71457 * 15 14 13 18 18 C 1.32541 * 120.99496 * 0.57892 * 17 15 14 19 19 C 1.38118 * 119.21591 * 359.43190 * 18 17 15 20 20 C 1.50696 * 120.81854 * 180.25565 * 19 18 17 21 21 H 1.09004 * 109.47081 * 294.15145 * 1 2 3 22 22 H 1.08998 * 109.47183 * 54.14828 * 1 2 3 23 23 H 1.08997 * 109.47267 * 174.15070 * 1 2 3 24 24 H 1.08994 * 109.46976 * 239.99691 * 2 1 3 25 25 H 1.09000 * 109.46914 * 119.99548 * 2 1 3 26 26 H 1.09002 * 109.47399 * 186.04422 * 4 3 2 27 27 H 1.09001 * 109.46906 * 306.03906 * 4 3 2 28 28 H 0.97003 * 120.00066 * 180.02562 * 8 7 5 29 29 H 1.07996 * 120.39193 * 179.70928 * 18 17 15 30 30 H 1.08991 * 109.47272 * 86.45424 * 20 19 18 31 31 H 1.09007 * 109.47137 * 206.45180 * 20 19 18 32 32 H 1.08999 * 109.47086 * 326.45169 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4186 1.4487 -0.4438 5 6 3.5058 1.0375 -1.8910 6 1 2.6116 0.7565 -2.4273 7 6 4.7275 1.0191 -2.5300 8 7 5.8166 1.3599 -1.8764 9 14 4.8357 0.5087 -4.3236 10 1 4.6804 1.7056 -5.1890 11 1 6.1562 -0.1200 -4.5806 12 1 3.7564 -0.4650 -4.6272 13 6 1.8680 1.9653 1.2487 14 7 2.4518 1.4308 2.3173 15 6 2.3091 1.9803 3.5075 16 17 3.0888 1.2481 4.8748 17 7 1.5939 3.0744 3.6867 18 6 0.9775 3.6609 2.6705 19 6 1.0992 3.1203 1.4053 20 6 0.4186 3.7608 0.2232 21 1 -0.3633 0.4205 0.9377 22 1 -0.3633 0.6019 -0.8329 23 1 -0.3633 -1.0223 -0.1047 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.7890 2.4679 -0.3327 27 1 4.0232 0.7743 0.1627 28 1 6.6760 1.3473 -2.3261 29 1 0.3907 4.5536 2.8290 30 1 1.0625 4.5370 -0.1901 31 1 0.2256 3.0052 -0.5383 32 1 -0.5247 4.2035 0.5431 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085787601.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:44 Heat of formation + Delta-G solvation = 27.343237 kcal Electronic energy + Delta-G solvation = -16905.308254 eV Core-core repulsion = 14119.352133 eV Total energy + Delta-G solvation = -2785.956121 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.083 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.33973 -38.89841 -37.87927 -34.99936 -34.74702 -33.78520 -31.69918 -29.05612 -27.99267 -25.47512 -24.41948 -23.73638 -22.31888 -19.27243 -18.66779 -18.23958 -17.14823 -16.37076 -16.21591 -15.58684 -15.44794 -15.30731 -14.58001 -14.36118 -14.13533 -14.02007 -13.10494 -12.95522 -12.88231 -12.78545 -12.64173 -12.53980 -12.47352 -12.20179 -12.15011 -11.91736 -11.66055 -11.41641 -10.66971 -10.46624 -10.03921 -9.60652 -8.24123 -6.35954 -0.35353 -0.10200 0.33515 1.43503 1.44937 1.56153 2.35990 2.47711 2.67888 3.10078 3.13010 3.57036 3.82193 3.95225 4.08083 4.30234 4.41411 4.65085 4.84175 4.91819 4.95845 4.99897 5.05888 5.10104 5.17575 5.33344 5.51228 5.61015 5.74819 5.93612 5.95788 6.45364 6.74638 6.78473 7.33936 8.87704 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.022870 B = 0.006470 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.032051 B = 4326.493395 C = 4757.559987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.054 3.946 3 N -0.475 5.475 4 C 0.226 3.774 5 C -0.523 4.523 6 H 0.076 0.924 7 C 0.003 3.997 8 N -0.935 5.935 9 Si 0.975 3.025 10 H -0.270 1.270 11 H -0.287 1.287 12 H -0.259 1.259 13 C 0.342 3.658 14 N -0.563 5.563 15 C 0.346 3.654 16 Cl 0.015 6.985 17 N -0.520 5.520 18 C 0.166 3.834 19 C -0.159 4.159 20 C -0.092 4.092 21 H 0.039 0.961 22 H 0.072 0.928 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.024 0.976 26 H -0.005 1.005 27 H -0.032 1.032 28 H 0.265 0.735 29 H 0.229 0.771 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.793 3.408 6.466 14.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.073 4.073 3 N -0.199 5.199 4 C 0.101 3.899 5 C -0.561 4.561 6 H 0.094 0.906 7 C -0.196 4.196 8 N -0.575 5.575 9 Si 0.799 3.201 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.182 1.182 13 C 0.107 3.893 14 N -0.284 5.284 15 C 0.051 3.949 16 Cl 0.043 6.957 17 N -0.237 5.237 18 C 0.002 3.998 19 C -0.165 4.165 20 C -0.149 4.149 21 H 0.059 0.941 22 H 0.091 0.909 23 H 0.096 0.904 24 H 0.099 0.901 25 H 0.043 0.957 26 H 0.014 0.986 27 H -0.014 1.014 28 H 0.074 0.926 29 H 0.246 0.754 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.361 3.179 6.995 14.555 hybrid contribution 1.234 -0.616 -0.530 1.477 sum -11.128 2.563 6.465 13.122 Atomic orbital electron populations 1.21678 0.92578 1.02773 1.01610 1.22149 0.97124 0.86889 1.01106 1.60462 1.23099 1.19965 1.16329 1.19288 0.80983 0.94259 0.95388 1.21368 0.93984 1.45273 0.95463 0.90552 1.25974 0.95019 0.95098 1.03479 1.70120 0.99265 1.49220 1.38907 0.85288 0.77567 0.78772 0.78433 1.19580 1.21271 1.18247 1.20742 0.88998 0.91765 0.87793 1.67977 1.23770 1.36685 0.99950 1.22884 0.94023 0.90271 0.87769 1.98392 1.77879 1.80924 1.38505 1.67934 1.10087 1.08851 1.36849 1.23841 0.92613 0.98066 0.85290 1.21952 0.99283 0.95469 0.99753 1.20636 1.00219 1.00581 0.93497 0.94145 0.90902 0.90382 0.90140 0.95711 0.98645 1.01425 0.92637 0.75448 0.90575 0.90751 0.87431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.72 9.93 71.98 0.72 -3.01 16 2 C 0.05 2.10 5.49 86.31 0.47 2.57 16 3 N -0.48 -20.25 3.45 -705.64 -2.44 -22.69 16 4 C 0.23 12.11 4.55 85.56 0.39 12.50 16 5 C -0.52 -28.60 8.24 25.60 0.21 -28.39 16 6 H 0.08 3.96 7.30 -2.91 -0.02 3.94 16 7 C 0.00 0.15 5.46 84.66 0.46 0.62 16 8 N -0.94 -56.30 13.29 21.45 0.28 -56.01 16 9 Si 0.98 42.97 29.54 68.60 2.03 44.99 16 10 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 13 C 0.34 13.40 4.67 133.17 0.62 14.02 16 14 N -0.56 -23.36 9.57 -188.32 -1.80 -25.16 16 15 C 0.35 12.57 8.18 180.82 1.48 14.05 16 16 Cl 0.02 0.49 29.27 -2.72 -0.08 0.41 16 17 N -0.52 -16.28 10.40 -190.99 -1.99 -18.27 16 18 C 0.17 4.16 11.00 84.56 0.93 5.09 16 19 C -0.16 -4.72 5.93 -19.56 -0.12 -4.84 16 20 C -0.09 -2.11 9.87 71.23 0.70 -1.41 16 21 H 0.04 1.14 7.83 -2.38 -0.02 1.12 16 22 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 23 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.08 3.36 6.58 -2.39 -0.02 3.34 16 25 H 0.02 1.03 7.45 -2.39 -0.02 1.01 16 26 H 0.00 -0.27 8.05 -2.39 -0.02 -0.29 16 27 H -0.03 -1.96 8.12 -2.39 -0.02 -1.98 16 28 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 29 H 0.23 3.10 8.06 -2.91 -0.02 3.08 16 30 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 1.98 7.46 -2.38 -0.02 1.97 16 32 H 0.11 1.52 8.12 -2.39 -0.02 1.50 16 Total: -1.00 -67.63 291.88 3.00 -64.63 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: 1.12 Total: 0.88 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 5.87 Total: 11.22 kcal Atomic # 7 Polarization: -116.19 SS G_CDS: -5.94 Total: -122.13 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 17 Polarization: 0.49 SS G_CDS: -0.08 Total: 0.41 kcal Total: -67.63 3.00 -64.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085787601.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.978 kcal (2) G-P(sol) polarization free energy of solvation -67.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds