Wall clock time and date at job start Mon Mar 30 2020 06:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99816 * 2 1 4 4 H 1.48493 * 109.47527 * 270.00067 * 3 2 1 5 5 H 1.48497 * 109.47132 * 30.00312 * 3 2 1 6 6 H 1.48503 * 109.46895 * 150.00143 * 3 2 1 7 7 C 1.37871 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00067 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99932 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47089 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46813 * 180.02562 * 10 9 7 12 12 S 1.81404 * 109.46807 * 180.02562 * 11 10 9 13 13 C 1.76202 * 102.99903 * 179.97438 * 12 11 10 14 14 C 1.38913 * 120.00207 * 180.02562 * 13 12 11 15 15 C 1.38119 * 120.03254 * 180.02562 * 14 13 12 16 16 C 1.38792 * 120.02616 * 0.23548 * 15 14 13 17 17 N 1.40172 * 119.99660 * 179.72108 * 16 15 14 18 18 C 1.39049 * 119.99880 * 359.48941 * 16 15 14 19 19 F 1.35099 * 120.01156 * 180.23256 * 18 16 15 20 20 C 1.38231 * 119.96946 * 0.52911 * 18 16 15 21 21 H 0.97008 * 120.00465 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46628 * 60.00172 * 9 7 2 23 23 H 1.08994 * 109.47239 * 300.00782 * 9 7 2 24 24 H 1.09002 * 109.46929 * 60.00290 * 10 9 7 25 25 H 1.09000 * 109.46889 * 300.00248 * 10 9 7 26 26 H 1.08994 * 109.47672 * 59.99899 * 11 10 9 27 27 H 1.09002 * 109.46845 * 299.99967 * 11 10 9 28 28 H 1.08006 * 119.98060 * 0.02562 * 14 13 12 29 29 H 1.08002 * 119.98235 * 179.97438 * 15 14 13 30 30 H 0.97001 * 120.00089 * 0.02562 * 17 16 15 31 31 H 0.97003 * 120.00146 * 179.97438 * 17 16 15 32 32 H 1.08001 * 120.01614 * 179.74887 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 16 2.6591 -6.3658 -0.0004 13 6 1.6117 -7.7828 -0.0005 14 6 2.1663 -9.0564 0.0005 15 6 1.3459 -10.1676 -0.0001 16 6 -0.0333 -10.0125 -0.0067 17 7 -0.8653 -11.1406 -0.0132 18 6 -0.5897 -8.7382 -0.0019 19 9 -1.9322 -8.5870 -0.0036 20 6 0.2314 -7.6262 -0.0017 21 1 -0.4851 0.8401 0.0004 22 1 0.6240 -2.5566 -0.8904 23 1 0.6246 -2.5571 0.8895 24 1 2.8719 -3.6043 0.8895 25 1 2.8719 -3.6042 -0.8905 26 1 0.8539 -5.0446 -0.8913 27 1 0.8533 -5.0450 0.8886 28 1 3.2395 -9.1778 0.0018 29 1 1.7779 -11.1574 0.0003 30 1 -0.4772 -12.0296 -0.0127 31 1 -1.8293 -11.0324 -0.0174 32 1 -0.1999 -6.6361 -0.0021 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085936093.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:19 Heat of formation + Delta-G solvation = -60.649043 kcal Electronic energy + Delta-G solvation = -15470.730067 eV Core-core repulsion = 12663.082060 eV Total energy + Delta-G solvation = -2807.648008 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.079 amu Computer time = 3.68 seconds Orbital eigenvalues (eV) -49.88374 -40.01109 -36.42011 -35.56893 -34.10591 -31.70544 -29.81380 -29.32661 -25.52526 -24.00100 -23.43289 -22.06372 -19.19318 -18.57475 -18.14464 -17.97712 -16.80908 -16.70747 -16.54857 -16.25679 -16.05763 -15.59082 -14.96087 -14.40737 -14.27433 -14.04571 -13.71859 -13.60443 -13.22407 -12.81149 -12.77629 -12.41759 -12.25234 -12.16844 -11.66140 -11.47309 -11.25024 -11.07110 -10.56847 -9.93119 -9.48908 -8.21286 -7.96763 -6.32657 0.14072 0.24628 0.58328 1.41008 1.42272 1.47398 1.53661 2.41175 2.55719 2.81553 3.12344 3.26049 3.70719 3.95438 4.00779 4.10043 4.23628 4.49507 4.57053 4.77579 4.78999 4.92628 5.00020 5.08167 5.11869 5.27346 5.48050 5.66114 5.67084 5.81231 6.20956 6.37722 6.83312 6.87508 7.36816 8.90592 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.041394 B = 0.003664 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.270814 B = 7639.480771 C = 8289.999499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.081 4.081 11 C -0.092 4.092 12 S -0.122 6.122 13 C -0.126 4.126 14 C -0.058 4.058 15 C -0.147 4.147 16 C 0.186 3.814 17 N -0.862 5.862 18 C 0.011 3.989 19 F -0.151 7.151 20 C -0.135 4.135 21 H 0.264 0.736 22 H -0.005 1.005 23 H -0.005 1.005 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.154 0.846 29 H 0.173 0.827 30 H 0.417 0.583 31 H 0.405 0.595 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.939 -24.040 -0.017 24.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.009 4.009 10 C -0.120 4.120 11 C -0.240 4.240 12 S 0.122 5.878 13 C -0.241 4.241 14 C -0.082 4.082 15 C -0.171 4.171 16 C 0.077 3.923 17 N -0.403 5.403 18 C -0.014 4.014 19 F -0.130 7.130 20 C -0.160 4.160 21 H 0.073 0.927 22 H 0.014 0.986 23 H 0.014 0.986 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.172 0.828 29 H 0.190 0.810 30 H 0.248 0.752 31 H 0.234 0.766 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.993 -23.766 -0.014 23.954 hybrid contribution -2.060 0.965 -0.011 2.275 sum 0.933 -22.801 -0.025 22.820 Atomic orbital electron populations 1.70094 1.07824 1.27855 1.51573 1.25985 0.95779 1.03419 0.94632 0.85426 0.78685 0.78293 0.78538 1.19721 1.20750 1.18640 1.21670 0.93674 0.92166 1.50728 0.91961 1.18986 0.94203 0.92486 0.95241 1.21185 0.98062 0.90900 1.01851 1.23655 0.99912 0.95505 1.04954 1.85238 1.13593 0.96173 1.92843 1.21420 0.94728 0.98010 1.09918 1.20898 1.01230 0.89032 0.97007 1.20779 0.89377 1.00522 1.06385 1.17896 0.92043 0.86012 0.96339 1.42393 1.08395 1.05370 1.84182 1.17149 0.76817 0.93379 1.14093 1.91416 1.30055 1.96508 1.94996 1.21032 0.93057 0.98452 1.03453 0.92719 0.98620 0.98618 0.91975 0.91966 0.90045 0.90053 0.82845 0.80992 0.75161 0.76633 0.85830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.20 13.29 21.44 0.28 -56.92 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.97 44.50 29.54 68.60 2.03 46.53 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.54 -31.21 9.11 25.60 0.23 -30.98 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 9 C 0.03 1.58 4.97 29.85 0.15 1.73 16 10 C -0.08 -3.38 5.16 30.59 0.16 -3.22 16 11 C -0.09 -3.24 4.33 71.98 0.31 -2.93 16 12 S -0.12 -3.68 21.92 -56.49 -1.24 -4.92 16 13 C -0.13 -3.38 6.11 22.59 0.14 -3.24 16 14 C -0.06 -1.16 9.78 22.40 0.22 -0.94 16 15 C -0.15 -2.34 9.89 22.37 0.22 -2.12 16 16 C 0.19 3.56 6.77 38.13 0.26 3.82 16 17 N -0.86 -10.60 9.11 -51.05 -0.47 -11.06 16 18 C 0.01 0.29 7.31 22.46 0.16 0.45 16 19 F -0.15 -4.11 16.64 44.97 0.75 -3.36 16 20 C -0.13 -3.84 9.33 22.43 0.21 -3.63 16 21 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 22 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 23 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 24 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 25 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 26 H 0.08 2.86 7.74 -2.39 -0.02 2.84 16 27 H 0.08 2.86 7.74 -2.39 -0.02 2.84 16 28 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 29 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 30 H 0.42 2.55 8.85 -92.71 -0.82 1.73 16 31 H 0.40 4.81 8.32 -92.71 -0.77 4.04 16 32 H 0.12 3.79 5.86 -2.91 -0.02 3.78 16 Total: -1.00 -66.69 293.27 3.44 -63.25 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -0.44 Total: 7.11 kcal Atomic # 6 Polarization: -43.16 SS G_CDS: 2.52 Total: -40.63 kcal Atomic # 7 Polarization: -67.80 SS G_CDS: -0.18 Total: -67.98 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.75 Total: -3.36 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.24 Total: -4.92 kcal Total: -66.69 3.44 -63.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085936093.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.605 kcal (2) G-P(sol) polarization free energy of solvation -66.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.68 seconds