Wall clock time and date at job start Mon Mar 30 2020 06:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46896 * 111.00052 * 2 1 4 4 H 1.09004 * 109.47212 * 324.99893 * 3 2 1 5 5 C 1.52999 * 109.47009 * 85.00435 * 3 2 1 6 6 C 1.50704 * 109.47158 * 205.00159 * 3 2 1 7 7 C 1.38315 * 119.92710 * 139.99973 * 6 3 2 8 8 C 1.38096 * 120.09537 * 179.97438 * 7 6 3 9 9 C 1.38865 * 119.94113 * 0.02562 * 8 7 6 10 10 O 1.35757 * 120.07252 * 180.02562 * 9 8 7 11 11 C 1.34827 * 117.00150 * 354.40453 * 10 9 8 12 12 H 1.07996 * 119.99647 * 5.06020 * 11 10 9 13 13 C 1.38657 * 119.99780 * 185.06099 * 11 10 9 14 14 N 1.31553 * 120.00011 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99608 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47009 * 90.00090 * 15 13 11 17 17 H 1.48501 * 109.47175 * 209.99845 * 15 13 11 18 18 H 1.48506 * 109.47336 * 330.00170 * 15 13 11 19 19 C 1.38965 * 119.85159 * 0.02562 * 9 8 7 20 20 Cl 1.73608 * 120.04488 * 180.02562 * 19 9 8 21 21 C 1.38218 * 119.90969 * 359.74182 * 19 9 8 22 22 H 1.09004 * 109.46996 * 299.99607 * 1 2 3 23 23 H 1.09003 * 109.47302 * 60.00004 * 1 2 3 24 24 H 1.08997 * 109.47341 * 180.02562 * 1 2 3 25 25 H 1.00904 * 110.99355 * 236.04739 * 2 1 3 26 26 H 1.08995 * 109.47228 * 180.02562 * 5 3 2 27 27 H 1.09000 * 109.46879 * 299.99604 * 5 3 2 28 28 H 1.08995 * 109.47492 * 59.99518 * 5 3 2 29 29 H 1.08003 * 119.94909 * 359.96094 * 7 6 3 30 30 H 1.08000 * 120.02740 * 180.02562 * 8 7 6 31 31 H 0.97005 * 119.99691 * 179.97438 * 14 13 11 32 32 H 1.08003 * 119.98009 * 180.27833 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3398 2.0123 -0.5895 5 6 2.0610 1.8925 1.4370 6 6 3.3777 1.3789 -0.6005 7 6 3.7578 2.4067 -1.4444 8 6 5.0237 2.4173 -1.9962 9 6 5.9159 1.3942 -1.7036 10 8 7.1612 1.4023 -2.2442 11 6 7.4306 2.3671 -3.1466 12 1 6.7001 3.1365 -3.3488 13 6 8.6453 2.3714 -3.8151 14 7 9.5348 1.4339 -3.5692 15 14 9.0182 3.7077 -5.0659 16 1 9.6712 4.8547 -4.3852 17 1 9.9268 3.1691 -6.1098 18 1 7.7530 4.1618 -5.6972 19 6 5.5312 0.3622 -0.8563 20 17 6.6428 -0.9191 -0.4866 21 6 4.2643 0.3602 -0.3036 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8305 -0.5261 -0.7814 26 1 2.4511 2.9102 1.4370 27 1 1.0612 1.8871 1.8713 28 1 2.7166 1.2516 2.0264 29 1 3.0635 3.2020 -1.6723 30 1 5.3195 3.2206 -2.6547 31 1 10.3845 1.4368 -4.0371 32 1 3.9656 -0.4390 0.3586 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127136041.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:01 Heat of formation + Delta-G solvation = -31.619399 kcal Electronic energy + Delta-G solvation = -16397.193000 eV Core-core repulsion = 13576.387317 eV Total energy + Delta-G solvation = -2820.805684 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.98822 -39.10281 -37.38228 -36.57352 -34.29821 -32.05750 -31.63378 -29.43914 -27.40597 -26.13899 -23.98678 -23.22361 -21.41612 -19.84084 -18.94340 -17.38088 -16.88350 -16.28758 -15.94309 -15.74771 -15.54942 -15.08854 -14.70081 -14.56175 -14.00190 -13.88722 -13.56763 -13.40736 -13.03311 -12.77151 -12.70399 -12.60485 -12.18662 -12.13984 -11.96152 -11.90503 -11.53609 -11.27073 -10.79556 -9.69063 -9.34804 -8.95690 -8.46690 -6.14958 0.37184 0.54218 1.36290 1.45275 1.46258 1.53851 2.16848 2.70026 3.08704 3.35891 3.37676 3.81454 4.07858 4.27530 4.36178 4.48699 4.54714 4.64412 4.75921 4.82453 4.91662 5.00443 5.07232 5.10145 5.12846 5.34452 5.44249 5.50904 5.60938 5.96638 6.00331 6.20210 6.46825 6.96235 7.71852 8.74962 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.028517 B = 0.005703 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.623698 B = 4908.740563 C = 5612.879831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.700 5.700 3 C 0.144 3.856 4 H 0.061 0.939 5 C -0.132 4.132 6 C -0.158 4.158 7 C -0.053 4.053 8 C -0.232 4.232 9 C 0.122 3.878 10 O -0.208 6.208 11 C -0.417 4.417 12 H 0.106 0.894 13 C -0.018 4.018 14 N -0.912 5.912 15 Si 1.018 2.982 16 H -0.264 1.264 17 H -0.274 1.274 18 H -0.251 1.251 19 C -0.123 4.123 20 Cl -0.087 7.087 21 C -0.040 4.040 22 H 0.070 0.930 23 H 0.025 0.975 24 H 0.075 0.925 25 H 0.343 0.657 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.150 0.850 30 H 0.132 0.868 31 H 0.273 0.727 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.050 1.724 4.838 16.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.331 5.331 3 C 0.034 3.966 4 H 0.079 0.921 5 C -0.190 4.190 6 C -0.160 4.160 7 C -0.071 4.071 8 C -0.251 4.251 9 C 0.069 3.931 10 O -0.113 6.113 11 C -0.493 4.493 12 H 0.123 0.877 13 C -0.217 4.217 14 N -0.549 5.549 15 Si 0.837 3.163 16 H -0.189 1.189 17 H -0.199 1.199 18 H -0.174 1.174 19 C -0.150 4.150 20 Cl -0.059 7.059 21 C -0.059 4.059 22 H 0.088 0.912 23 H 0.044 0.956 24 H 0.093 0.907 25 H 0.161 0.839 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.168 0.832 30 H 0.149 0.851 31 H 0.082 0.918 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.510 1.324 5.529 16.519 hybrid contribution 0.728 0.443 -1.446 1.679 sum -14.782 1.767 4.082 15.437 Atomic orbital electron populations 1.22284 0.86639 1.02514 1.00708 1.60556 1.08804 1.13409 1.50358 1.20250 0.89733 0.90025 0.96545 0.92110 1.21769 1.02134 1.00357 0.94732 1.19705 0.97194 0.96525 1.02533 1.21066 0.94451 0.97739 0.93890 1.21215 0.95581 1.00690 1.07617 1.19622 0.86415 0.93802 0.93236 1.84035 1.24974 1.50540 1.51771 1.21882 1.03502 1.05910 1.18019 0.87657 1.26574 0.94344 1.00767 0.99973 1.70209 1.07794 1.34574 1.42348 0.84595 0.79212 0.76129 0.76336 1.18877 1.19865 1.17418 1.20340 0.93950 0.93021 1.07718 1.98296 1.63773 1.50011 1.93788 1.20655 0.88920 0.99069 0.97263 0.91159 0.95627 0.90659 0.83866 0.92249 0.91374 0.93096 0.83229 0.85068 0.91831 0.83526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.50 127.69 1.34 1.78 16 2 N -0.70 -14.70 6.05 -518.52 -3.14 -17.84 16 3 C 0.14 3.21 2.81 44.17 0.12 3.33 16 4 H 0.06 1.21 7.66 -2.38 -0.02 1.20 16 5 C -0.13 -2.74 9.39 71.98 0.68 -2.06 16 6 C -0.16 -4.67 4.72 -19.84 -0.09 -4.76 16 7 C -0.05 -1.67 9.66 22.25 0.21 -1.45 16 8 C -0.23 -9.46 9.17 22.39 0.21 -9.25 16 9 C 0.12 5.91 6.64 22.59 0.15 6.06 16 10 O -0.21 -12.16 9.22 -22.79 -0.21 -12.37 16 11 C -0.42 -23.54 9.49 67.92 0.64 -22.90 16 12 H 0.11 5.36 5.20 -2.91 -0.02 5.34 16 13 C -0.02 -0.99 5.49 84.83 0.47 -0.53 16 14 N -0.91 -55.35 13.67 21.61 0.30 -55.05 16 15 Si 1.02 41.82 29.55 68.60 2.03 43.85 16 16 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 17 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 18 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 19 C -0.12 -5.26 6.34 22.44 0.14 -5.12 16 20 Cl -0.09 -3.78 28.51 -2.72 -0.08 -3.86 16 21 C -0.04 -1.37 8.78 22.27 0.20 -1.17 16 22 H 0.07 1.01 7.44 -2.39 -0.02 1.00 16 23 H 0.03 0.38 8.06 -2.39 -0.02 0.36 16 24 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.34 7.58 8.08 -89.69 -0.72 6.86 16 26 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.07 1.17 7.45 -2.39 -0.02 1.15 16 28 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.15 3.59 8.03 -2.91 -0.02 3.57 16 30 H 0.13 5.36 5.64 -2.91 -0.02 5.34 16 31 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 32 H 0.15 4.49 7.72 -2.91 -0.02 4.47 16 Total: -1.00 -66.28 289.32 3.38 -62.89 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.42 Total: 18.46 kcal Atomic # 6 Polarization: -40.15 SS G_CDS: 4.07 Total: -36.08 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -2.84 Total: -72.89 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.21 Total: -12.37 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 17 Polarization: -3.78 SS G_CDS: -0.08 Total: -3.86 kcal Total: -66.28 3.38 -62.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127136041.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.276 kcal (2) G-P(sol) polarization free energy of solvation -66.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds