Wall clock time and date at job start Mon Mar 30 2020 07:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46876 * 2 1 4 4 N 1.46502 * 109.47392 * 119.99574 * 2 1 3 5 5 C 1.46499 * 119.99658 * 120.00091 * 4 2 1 6 6 C 1.50701 * 109.46992 * 90.00121 * 5 4 2 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47094 * 90.00289 * 10 8 6 12 12 H 1.48505 * 109.47195 * 210.00171 * 10 8 6 13 13 H 1.48493 * 109.47449 * 330.00136 * 10 8 6 14 14 C 1.38469 * 119.99982 * 300.00485 * 4 2 1 15 15 N 1.32474 * 119.20194 * 359.72448 * 14 4 2 16 16 C 1.32287 * 120.74972 * 179.76190 * 15 14 4 17 17 C 1.38695 * 119.18006 * 0.50752 * 16 15 14 18 18 Cl 1.73605 * 120.72982 * 179.73066 * 17 16 15 19 19 C 1.38697 * 118.53798 * 359.74489 * 17 16 15 20 20 N 1.32282 * 119.18024 * 0.02562 * 19 17 16 21 21 H 1.09010 * 109.47195 * 299.99831 * 1 2 3 22 22 H 1.08993 * 109.47463 * 60.00313 * 1 2 3 23 23 H 1.09006 * 109.46650 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47060 * 240.00302 * 2 1 3 25 25 H 1.08997 * 109.46873 * 180.02562 * 3 2 1 26 26 H 1.09010 * 109.46695 * 300.00249 * 3 2 1 27 27 H 1.09000 * 109.47434 * 59.99662 * 3 2 1 28 28 H 1.09002 * 109.47391 * 330.00112 * 5 4 2 29 29 H 1.09001 * 109.46813 * 210.00168 * 5 4 2 30 30 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 31 31 H 1.08001 * 120.40451 * 180.25522 * 16 15 14 32 32 H 1.08000 * 120.41152 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.8607 -1.8816 1.0618 6 6 4.3096 -1.4696 1.0156 7 1 4.5763 -0.4251 1.0804 8 6 5.2947 -2.4263 0.8917 9 7 4.9699 -3.6983 0.8133 10 14 7.0906 -1.9157 0.8352 11 1 7.6402 -1.8852 2.2144 12 1 7.8571 -2.8908 0.0185 13 1 7.2025 -0.5653 0.2278 14 6 1.6839 -0.2174 2.4538 15 7 0.9258 0.8641 2.5569 16 6 0.5838 1.3398 3.7430 17 6 1.0378 0.6979 4.8856 18 17 0.6193 1.2917 6.4623 19 6 1.8338 -0.4287 4.7407 20 7 2.1345 -0.8539 3.5247 21 1 -0.3634 0.5138 0.8901 22 1 -0.3634 0.5137 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1299 1.4426 -0.0005 26 1 1.6765 1.9564 -0.8901 27 1 1.6766 1.9564 0.8899 28 1 2.6029 -2.4071 0.1422 29 1 2.6972 -2.5403 1.9147 30 1 5.6629 -4.3713 0.7258 31 1 -0.0378 2.2195 3.8206 32 1 2.2043 -0.9517 5.6099 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168014053.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:27 Heat of formation + Delta-G solvation = 40.171773 kcal Electronic energy + Delta-G solvation = -16942.884608 eV Core-core repulsion = 14157.484775 eV Total energy + Delta-G solvation = -2785.399834 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.93966 -38.60751 -37.34674 -35.28674 -34.55001 -33.15624 -31.49080 -28.56808 -27.94706 -25.71507 -25.10444 -23.73895 -21.67452 -18.82552 -18.53767 -18.03042 -17.09310 -16.64149 -16.21789 -15.83888 -15.61624 -14.75834 -14.60446 -14.32321 -14.00721 -13.59925 -13.32765 -13.11585 -12.85482 -12.76836 -12.60712 -12.33869 -12.23698 -12.20686 -12.01467 -11.76250 -11.62680 -11.39236 -10.64359 -10.60987 -9.86342 -8.68837 -8.13994 -6.32916 0.14267 0.26667 1.18465 1.36865 1.37999 1.47940 1.98646 2.39131 2.92237 3.09741 3.29746 3.60471 3.67434 4.09073 4.14506 4.30829 4.43342 4.69116 4.78782 4.87736 5.01412 5.06696 5.09938 5.14702 5.31240 5.47316 5.49921 5.67507 5.93126 6.05222 6.15722 6.64073 6.78084 7.32062 7.45217 8.86617 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.019759 B = 0.007010 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.765033 B = 3993.265768 C = 4866.464301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.149 3.851 3 C -0.154 4.154 4 N -0.565 5.565 5 C 0.274 3.726 6 C -0.530 4.530 7 H 0.044 0.956 8 C 0.015 3.985 9 N -0.925 5.925 10 Si 0.959 3.041 11 H -0.278 1.278 12 H -0.276 1.276 13 H -0.270 1.270 14 C 0.558 3.442 15 N -0.559 5.559 16 C 0.202 3.798 17 C -0.222 4.222 18 Cl -0.044 7.044 19 C 0.197 3.803 20 N -0.582 5.582 21 H 0.076 0.924 22 H 0.087 0.913 23 H 0.037 0.963 24 H 0.077 0.923 25 H 0.027 0.973 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.017 0.983 29 H 0.021 0.979 30 H 0.267 0.733 31 H 0.205 0.795 32 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.798 10.743 5.012 15.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.046 3.954 3 C -0.212 4.212 4 N -0.277 5.277 5 C 0.153 3.847 6 C -0.569 4.569 7 H 0.063 0.937 8 C -0.184 4.184 9 N -0.565 5.565 10 Si 0.784 3.216 11 H -0.204 1.204 12 H -0.201 1.201 13 H -0.195 1.195 14 C 0.204 3.796 15 N -0.282 5.282 16 C 0.033 3.967 17 C -0.259 4.259 18 Cl -0.016 7.016 19 C 0.028 3.972 20 N -0.305 5.305 21 H 0.095 0.905 22 H 0.106 0.894 23 H 0.056 0.944 24 H 0.095 0.905 25 H 0.046 0.954 26 H 0.104 0.896 27 H 0.095 0.905 28 H 0.035 0.965 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.222 0.778 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -9.434 10.148 3.907 14.397 hybrid contribution 1.004 -0.005 0.982 1.404 sum -8.430 10.143 4.889 14.066 Atomic orbital electron populations 1.22154 0.93487 1.01333 1.04171 1.21125 0.95203 0.93525 0.85561 1.22129 0.99509 0.95637 1.03894 1.47079 1.50212 1.29333 1.01066 1.18863 0.88090 0.81736 0.96019 1.21569 0.92238 0.92812 1.50309 0.93738 1.25686 1.03272 0.94735 0.94703 1.70028 1.34833 1.00839 1.50780 0.85542 0.79690 0.78189 0.78134 1.20368 1.20089 1.19495 1.19610 0.86898 0.86204 0.86900 1.68271 1.19150 1.13736 1.27090 1.23493 0.91752 0.96785 0.84677 1.22228 1.11089 1.03135 0.89402 1.98330 1.92531 1.87524 1.23206 1.23289 0.88768 0.90684 0.94458 1.68226 1.27982 1.35315 0.98977 0.90492 0.89400 0.94382 0.90500 0.95380 0.89576 0.90526 0.96504 0.96139 0.92438 0.77811 0.79965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.48 9.13 71.98 0.66 -3.82 16 2 C 0.15 5.34 3.28 44.99 0.15 5.49 16 3 C -0.15 -4.95 9.13 71.98 0.66 -4.29 16 4 N -0.57 -24.88 2.49 -691.08 -1.72 -26.60 16 5 C 0.27 14.51 5.13 85.63 0.44 14.95 16 6 C -0.53 -30.02 9.39 25.60 0.24 -29.78 16 7 H 0.04 2.57 7.81 -2.91 -0.02 2.55 16 8 C 0.02 0.86 5.46 84.66 0.46 1.33 16 9 N -0.92 -54.64 13.29 21.45 0.28 -54.36 16 10 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 13 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 14 C 0.56 23.07 7.62 261.47 1.99 25.06 16 15 N -0.56 -18.71 5.44 -197.88 -1.08 -19.79 16 16 C 0.20 5.37 11.12 84.73 0.94 6.31 16 17 C -0.22 -6.03 6.36 22.49 0.14 -5.89 16 18 Cl -0.04 -0.94 29.02 -2.72 -0.08 -1.02 16 19 C 0.20 6.49 11.12 84.73 0.94 7.43 16 20 N -0.58 -24.85 9.11 -197.88 -1.80 -26.65 16 21 H 0.08 2.29 5.94 -2.38 -0.01 2.28 16 22 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 23 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 24 H 0.08 2.85 7.79 -2.39 -0.02 2.83 16 25 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 27 H 0.08 2.48 5.92 -2.39 -0.01 2.46 16 28 H 0.02 0.93 7.92 -2.39 -0.02 0.92 16 29 H 0.02 1.20 7.33 -2.39 -0.02 1.18 16 30 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 31 H 0.21 3.64 8.06 -2.91 -0.02 3.62 16 32 H 0.18 5.01 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -64.43 287.64 5.37 -59.06 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: 1.12 Total: 5.96 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: 6.62 Total: 16.79 kcal Atomic # 7 Polarization: -123.08 SS G_CDS: -4.31 Total: -127.40 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -64.43 5.37 -59.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168014053.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.228 kcal (2) G-P(sol) polarization free energy of solvation -64.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds