Wall clock time and date at job start Mon Mar 30 2020 07:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.40197 * 110.99993 * 2 1 4 4 C 1.39296 * 118.58004 * 35.45728 * 3 2 1 5 5 F 1.35099 * 119.87835 * 359.54926 * 4 3 2 6 6 C 1.38226 * 120.24139 * 179.50549 * 4 3 2 7 7 C 1.38469 * 120.05802 * 0.03412 * 6 4 3 8 8 F 1.35091 * 120.00760 * 180.11899 * 7 6 4 9 9 C 1.38322 * 119.98783 * 0.09643 * 7 6 4 10 10 C 1.38847 * 121.84281 * 215.19468 * 3 2 1 11 11 O 1.36151 * 121.37703 * 0.59961 * 10 3 2 12 12 C 1.43124 * 116.70990 * 344.89562 * 11 10 3 13 13 C 1.46759 * 111.00580 * 234.56018 * 2 1 3 14 14 H 1.08999 * 109.58567 * 55.21092 * 13 2 1 15 15 C 1.50704 * 109.66139 * 294.66447 * 13 2 1 16 16 H 1.08000 * 119.99648 * 0.88640 * 15 13 2 17 17 C 1.37874 * 120.00202 * 180.89164 * 15 13 2 18 18 N 1.31515 * 119.99902 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99933 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47577 * 89.99485 * 19 17 15 21 21 H 1.48510 * 109.46954 * 209.99684 * 19 17 15 22 22 H 1.48498 * 109.47178 * 329.99299 * 19 17 15 23 23 H 1.09000 * 109.47128 * 43.50193 * 1 2 3 24 24 H 1.08996 * 109.47745 * 163.50767 * 1 2 3 25 25 H 1.09007 * 109.47459 * 283.50919 * 1 2 3 26 26 H 1.07993 * 119.97227 * 180.02562 * 6 4 3 27 27 H 1.07994 * 119.88642 * 180.02562 * 9 7 6 28 28 H 1.08996 * 109.77782 * 165.05651 * 12 11 10 29 29 H 1.08999 * 109.77598 * 285.79875 * 12 11 10 30 30 H 0.97004 * 119.99812 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9714 1.3089 0.0000 4 6 1.2800 2.2880 0.7096 5 9 0.1462 1.9663 1.3700 6 6 1.7503 3.5875 0.7412 7 6 2.9121 3.9213 0.0659 8 9 3.3720 5.1910 0.0995 9 6 3.6019 2.9542 -0.6429 10 6 3.1338 1.6473 -0.6798 11 8 3.8347 0.7212 -1.3903 12 6 3.5227 -0.6529 -1.1397 13 6 1.9951 -0.7944 -1.1162 14 1 1.5791 -0.4269 -2.0543 15 6 1.6240 -2.2427 -0.9270 16 1 1.0404 -2.5430 -0.0693 17 6 2.0295 -3.1844 -1.8488 18 7 2.7397 -2.8187 -2.8935 19 14 1.5688 -4.9795 -1.6146 20 1 0.2696 -5.2483 -2.2816 21 1 2.6198 -5.8422 -2.2119 22 1 1.4511 -5.2752 -0.1641 23 1 -0.3633 0.7454 -0.7074 24 1 -0.3634 -0.9853 -0.2917 25 1 -0.3634 0.2401 0.9993 26 1 1.2110 4.3431 1.2931 27 1 4.5081 3.2163 -1.1687 28 1 3.9385 -1.2759 -1.9316 29 1 3.9358 -0.9554 -0.1775 30 1 3.0246 -3.4812 -3.5423 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213854965.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:44 Heat of formation + Delta-G solvation = -83.311362 kcal Electronic energy + Delta-G solvation = -19167.052628 eV Core-core repulsion = 15792.208732 eV Total energy + Delta-G solvation = -3374.843896 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.081 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.78753 -48.70556 -40.26885 -36.71430 -36.04784 -33.13990 -30.11513 -29.53474 -28.16984 -25.63397 -24.37562 -22.89313 -22.13723 -19.80563 -18.10955 -17.43879 -16.93548 -16.05924 -15.82177 -15.58750 -15.40574 -15.03171 -14.99977 -14.43540 -14.17035 -13.80778 -13.59698 -13.16783 -12.95772 -12.27047 -11.92609 -11.84350 -11.38950 -11.24161 -11.04827 -10.90301 -10.39141 -10.09962 -9.97828 -9.67440 -9.11325 -8.73774 -8.13686 -7.00086 -6.37858 -4.44829 1.29210 1.42014 3.14195 3.21962 3.25613 3.57868 3.80633 4.13251 4.27749 4.53866 4.70618 4.94455 5.02461 5.13102 5.51735 5.76707 5.92792 6.02981 6.11267 6.17556 6.19830 6.29162 6.34583 6.59241 6.80906 6.86188 7.14983 7.35563 7.52275 7.75627 7.97846 8.07181 8.61925 9.22343 10.69919 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.035358 B = 0.006764 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.703890 B = 4138.344933 C = 4827.590970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.479 5.479 3 C 0.023 3.977 4 C 0.105 3.895 5 F -0.128 7.128 6 C -0.202 4.202 7 C 0.114 3.886 8 F -0.138 7.138 9 C -0.178 4.178 10 C 0.148 3.852 11 O -0.315 6.315 12 C 0.055 3.945 13 C 0.184 3.816 14 H 0.029 0.971 15 C -0.513 4.513 16 H 0.073 0.927 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.910 3.090 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.271 1.271 23 H 0.027 0.973 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.142 0.858 27 H 0.144 0.856 28 H 0.147 0.853 29 H 0.056 0.944 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.865 8.142 4.091 9.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.192 5.192 3 C -0.079 4.079 4 C 0.082 3.918 5 F -0.106 7.106 6 C -0.222 4.222 7 C 0.093 3.907 8 F -0.116 7.116 9 C -0.198 4.198 10 C 0.098 3.902 11 O -0.229 6.229 12 C -0.019 4.019 13 C 0.079 3.921 14 H 0.047 0.953 15 C -0.551 4.551 16 H 0.091 0.909 17 C -0.141 4.141 18 N -0.529 5.529 19 Si 0.736 3.264 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.195 1.195 23 H 0.045 0.955 24 H 0.105 0.895 25 H 0.100 0.900 26 H 0.160 0.840 27 H 0.162 0.838 28 H 0.164 0.836 29 H 0.074 0.926 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.540 7.747 4.202 8.830 hybrid contribution -0.647 -0.623 -0.306 0.949 sum -1.187 7.124 3.896 8.206 Atomic orbital electron populations 1.22813 0.84918 1.02963 1.01986 1.58854 1.09075 1.06202 1.45092 1.19353 0.96780 0.90837 1.00898 1.16654 0.85121 0.91892 0.98103 1.91402 1.47752 1.92741 1.78748 1.20554 0.98878 0.95989 1.06821 1.16546 0.94375 0.79052 1.00727 1.91469 1.88494 1.36429 1.95237 1.20258 1.03176 0.90727 1.05638 1.18153 0.90496 0.89817 0.91733 1.86242 1.59019 1.18079 1.59515 1.23925 0.98556 0.75848 1.03535 1.20047 0.91563 0.93907 0.86544 0.95338 1.20917 1.35159 0.89644 1.09417 0.90892 1.25009 0.94549 0.99972 0.94526 1.69787 1.36311 1.34958 1.11874 0.86291 0.78304 0.83077 0.78683 1.20367 1.20875 1.19536 0.95458 0.89483 0.90028 0.84016 0.83778 0.83582 0.92600 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 8.22 60.06 0.49 0.86 16 2 N -0.48 -10.44 4.64 -172.25 -0.80 -11.24 16 3 C 0.02 0.47 5.74 -83.41 -0.48 -0.01 16 4 C 0.11 1.86 6.86 -39.19 -0.27 1.59 16 5 F -0.13 -2.19 13.51 2.25 0.03 -2.16 16 6 C -0.20 -3.11 9.99 -39.50 -0.39 -3.50 16 7 C 0.11 1.78 7.30 -39.47 -0.29 1.49 16 8 F -0.14 -2.02 17.27 2.25 0.04 -1.98 16 9 C -0.18 -2.98 9.92 -39.32 -0.39 -3.37 16 10 C 0.15 2.94 6.47 -39.12 -0.25 2.69 16 11 O -0.32 -6.85 10.40 -20.22 -0.21 -7.06 16 12 C 0.06 1.29 6.34 37.38 0.24 1.52 16 13 C 0.18 4.44 1.89 -68.72 -0.13 4.31 16 14 H 0.03 0.77 8.13 -51.93 -0.42 0.34 16 15 C -0.51 -12.98 7.69 -34.44 -0.26 -13.24 16 16 H 0.07 1.84 7.27 -52.49 -0.38 1.46 16 17 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 18 N -0.89 -23.23 11.32 55.43 0.63 -22.60 16 19 Si 0.91 19.71 29.54 -169.99 -5.02 14.69 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 23 H 0.03 0.51 7.79 -51.93 -0.40 0.10 16 24 H 0.09 1.74 6.52 -51.93 -0.34 1.40 16 25 H 0.08 1.45 5.91 -51.93 -0.31 1.14 16 26 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 27 H 0.14 2.15 8.06 -52.49 -0.42 1.72 16 28 H 0.15 3.60 6.06 -51.93 -0.31 3.29 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.27 6.68 8.31 -40.82 -0.34 6.35 16 LS Contribution 257.96 15.07 3.89 3.89 Total: -1.00 -25.53 257.96 -5.85 -31.38 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -2.57 Total: 1.28 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -1.83 Total: -6.19 kcal Atomic # 7 Polarization: -33.67 SS G_CDS: -0.17 Total: -33.84 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.21 Total: -7.06 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.07 Total: -4.14 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -25.53 -5.85 -31.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213854965.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.935 kcal (2) G-P(sol) polarization free energy of solvation -25.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds