Wall clock time and date at job start Mon Mar 30 2020 06:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99900 * 2 1 4 4 H 1.48492 * 109.47499 * 270.00424 * 3 2 1 5 5 H 1.48505 * 109.47125 * 30.00696 * 3 2 1 6 6 H 1.48502 * 109.46884 * 150.00613 * 3 2 1 7 7 C 1.37880 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00163 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99593 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.46687 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.76216 * 305.44778 * 10 9 7 12 12 C 1.53427 * 109.61657 * 185.00039 * 10 9 7 13 13 O 1.43135 * 107.95693 * 177.02575 * 12 10 9 14 14 C 1.36153 * 116.70653 * 45.42946 * 13 12 10 15 15 C 1.38866 * 118.71825 * 164.91513 * 14 13 12 16 16 C 1.38310 * 120.23509 * 179.79044 * 15 14 13 17 17 F 1.35097 * 120.01079 * 179.97438 * 16 15 14 18 18 C 1.38462 * 119.98640 * 359.97438 * 16 15 14 19 19 C 1.38236 * 120.06015 * 0.09649 * 18 16 15 20 20 F 1.35100 * 119.88228 * 179.97438 * 19 18 16 21 21 C 1.38838 * 121.37425 * 344.89115 * 14 13 12 22 22 N 1.40194 * 121.85182 * 0.60140 * 21 14 13 23 23 H 0.96998 * 119.99964 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.47136 * 59.99526 * 9 7 2 25 25 H 1.08999 * 109.46940 * 299.99538 * 9 7 2 26 26 H 1.09002 * 109.77493 * 57.39432 * 12 10 9 27 27 H 1.08998 * 109.76977 * 296.65356 * 12 10 9 28 28 H 1.08007 * 119.87994 * 359.81178 * 15 14 13 29 29 H 1.08003 * 119.97041 * 180.02562 * 18 16 15 30 30 H 1.00905 * 111.00305 * 215.19524 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 1 3.5837 -3.1821 0.8350 12 6 5.5506 -2.6423 0.1244 13 8 5.9828 -4.0052 0.1913 14 6 5.4275 -4.8679 -0.7038 15 6 6.0266 -6.1055 -0.8976 16 6 5.4865 -7.0078 -1.7960 17 9 6.0734 -8.2104 -1.9814 18 6 4.3440 -6.6782 -2.5054 19 6 3.7436 -5.4472 -2.3181 20 9 2.6293 -5.1291 -3.0126 21 6 4.2843 -4.5329 -1.4169 22 7 3.6532 -3.2906 -1.2621 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6804 0.8887 25 1 3.8745 -0.6801 -0.8912 26 1 5.8483 -2.1161 1.0314 27 1 5.9937 -2.1573 -0.7454 28 1 6.9175 -6.3646 -0.3445 29 1 3.9222 -7.3831 -3.2066 30 1 2.6515 -3.3812 -1.3436 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213855784.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:15 Heat of formation + Delta-G solvation = -121.277006 kcal Electronic energy + Delta-G solvation = -18582.534307 eV Core-core repulsion = 15206.044097 eV Total energy + Delta-G solvation = -3376.490209 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.081 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.05891 -49.96895 -41.91965 -38.34620 -37.31520 -34.89779 -32.92685 -31.46048 -29.54234 -28.15602 -25.58461 -24.18094 -23.12836 -21.14733 -19.86632 -19.00814 -18.88606 -17.92987 -17.41119 -17.17083 -16.89117 -16.53234 -16.35044 -16.29848 -15.91909 -15.61467 -15.31452 -14.78943 -14.27955 -13.99837 -13.65200 -13.40918 -13.33440 -13.11281 -12.52114 -12.37331 -11.93482 -11.85673 -11.69365 -11.31673 -11.08653 -10.77356 -9.65518 -8.72146 -8.29179 -6.34305 -0.14507 -0.03703 1.39813 1.40066 1.50782 1.95060 2.24038 2.36421 2.70487 2.92006 3.10170 3.24080 3.51997 3.64844 3.81878 3.99438 4.09065 4.13081 4.53657 4.61879 4.63282 4.74050 4.81997 4.89469 5.11216 5.24205 5.48449 5.56988 5.82114 5.91808 6.16158 6.22029 6.70757 7.29874 8.86923 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.034818 B = 0.005747 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.984782 B = 4871.004042 C = 5496.186735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.950 3.050 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.236 1.236 7 C -0.527 4.527 8 H 0.032 0.968 9 C 0.000 4.000 10 C 0.066 3.934 11 H 0.050 0.950 12 C 0.063 3.937 13 O -0.308 6.308 14 C 0.121 3.879 15 C -0.155 4.155 16 C 0.125 3.875 17 F -0.126 7.126 18 C -0.180 4.180 19 C 0.093 3.907 20 F -0.135 7.135 21 C 0.007 3.993 22 N -0.619 5.619 23 H 0.265 0.735 24 H 0.047 0.953 25 H 0.031 0.969 26 H 0.147 0.853 27 H 0.083 0.917 28 H 0.172 0.828 29 H 0.170 0.830 30 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.107 -10.367 -1.877 17.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.773 3.227 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.159 1.159 7 C -0.565 4.565 8 H 0.050 0.950 9 C -0.038 4.038 10 C -0.042 4.042 11 H 0.068 0.932 12 C -0.012 4.012 13 O -0.221 6.221 14 C 0.072 3.928 15 C -0.175 4.175 16 C 0.104 3.896 17 F -0.105 7.105 18 C -0.200 4.200 19 C 0.071 3.929 20 F -0.114 7.114 21 C -0.095 4.095 22 N -0.246 5.246 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.049 0.951 26 H 0.164 0.836 27 H 0.102 0.898 28 H 0.189 0.811 29 H 0.188 0.812 30 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 14.479 -9.888 -2.078 17.656 hybrid contribution -1.373 0.422 0.062 1.438 sum 13.106 -9.466 -2.016 16.292 Atomic orbital electron populations 1.70067 1.08437 1.28165 1.52338 1.25962 0.95517 1.03504 0.93997 0.85664 0.79865 0.78177 0.78946 1.19813 1.21529 1.15861 1.21241 0.91485 0.93009 1.50781 0.94999 1.19510 0.94568 0.91552 0.98179 1.22155 0.96200 0.97543 0.88288 0.93245 1.23547 0.92025 0.79577 1.06069 1.86207 1.63526 1.20037 1.52331 1.18075 0.91910 0.91565 0.91259 1.20463 1.03434 0.91625 1.01949 1.16509 0.93062 0.81923 0.98095 1.91527 1.83075 1.41673 1.94200 1.20889 0.97557 0.96657 1.04902 1.16914 0.86291 0.93903 0.95837 1.91497 1.49644 1.93168 1.77083 1.19293 0.98168 0.91196 1.00852 1.57186 1.15012 1.16970 1.35427 0.92570 0.93459 0.95064 0.83579 0.89838 0.81082 0.81200 0.80501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.92 13.96 21.45 0.30 -57.62 16 2 C 0.01 0.41 5.47 84.65 0.46 0.88 16 3 Si 0.95 41.91 27.47 68.60 1.88 43.79 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.24 -9.17 6.54 99.48 0.65 -8.52 16 7 C -0.53 -28.32 9.14 25.60 0.23 -28.09 16 8 H 0.03 1.90 7.45 -2.92 -0.02 1.88 16 9 C 0.00 -0.02 3.73 29.85 0.11 0.09 16 10 C 0.07 2.40 2.65 45.08 0.12 2.52 16 11 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 12 C 0.06 1.74 6.55 72.13 0.47 2.21 16 13 O -0.31 -8.74 10.40 -95.29 -0.99 -9.73 16 14 C 0.12 3.50 6.47 22.56 0.15 3.65 16 15 C -0.15 -3.66 9.91 22.44 0.22 -3.43 16 16 C 0.13 2.88 7.30 22.34 0.16 3.04 16 17 F -0.13 -2.73 17.27 44.97 0.78 -1.95 16 18 C -0.18 -4.37 9.99 22.32 0.22 -4.15 16 19 C 0.09 2.84 7.25 22.52 0.16 3.01 16 20 F -0.14 -4.54 16.55 44.97 0.74 -3.79 16 21 C 0.01 0.23 6.25 38.20 0.24 0.47 16 22 N -0.62 -23.29 6.20 -317.04 -1.97 -25.25 16 23 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 24 H 0.05 1.85 7.20 -2.39 -0.02 1.83 16 25 H 0.03 1.31 7.57 -2.39 -0.02 1.29 16 26 H 0.15 3.20 8.14 -2.39 -0.02 3.18 16 27 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.17 3.18 8.06 -2.91 -0.02 3.16 16 29 H 0.17 3.27 8.06 -2.91 -0.02 3.25 16 30 H 0.37 15.38 7.12 -89.69 -0.64 14.74 16 Total: -1.00 -62.04 265.50 3.80 -58.24 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.49 Total: 16.11 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: 2.56 Total: -19.80 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -1.67 Total: -82.87 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.99 Total: -9.73 kcal Atomic # 9 Polarization: -7.27 SS G_CDS: 1.52 Total: -5.74 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 1.88 Total: 43.79 kcal Total: -62.04 3.80 -58.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213855784.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.036 kcal (2) G-P(sol) polarization free energy of solvation -62.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds