Wall clock time and date at job start Mon Mar 30 2020 07:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.61662 * 2 1 4 4 N 1.46750 * 109.76311 * 120.44605 * 2 1 3 5 5 C 1.40200 * 112.10339 * 170.01000 * 4 2 1 6 6 C 1.39298 * 118.58356 * 160.12673 * 5 4 2 7 7 F 1.35104 * 119.88288 * 359.49507 * 6 5 4 8 8 C 1.38238 * 120.23751 * 179.51195 * 6 5 4 9 9 C 1.38458 * 120.05863 * 0.27356 * 8 6 5 10 10 F 1.35097 * 120.00596 * 179.81284 * 9 8 6 11 11 C 1.38318 * 119.98926 * 359.54042 * 9 8 6 12 12 C 1.38839 * 121.84697 * 339.82441 * 5 4 2 13 13 O 1.36162 * 121.36961 * 0.87152 * 12 5 4 14 14 C 1.43128 * 116.70171 * 344.66914 * 13 12 5 15 15 H 1.09003 * 109.77145 * 285.85750 * 14 13 12 16 16 C 1.50695 * 109.76997 * 165.12140 * 14 13 12 17 17 H 1.08002 * 120.00382 * 239.99717 * 16 14 13 18 18 C 1.37875 * 120.00193 * 60.00110 * 16 14 13 19 19 N 1.31522 * 119.99726 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 120.00256 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47013 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47036 * 119.99777 * 20 18 16 23 23 H 1.48503 * 109.46879 * 239.99628 * 20 18 16 24 24 H 1.08998 * 109.47276 * 180.35235 * 1 2 3 25 25 H 1.09003 * 109.47374 * 300.35152 * 1 2 3 26 26 H 1.09001 * 109.47491 * 60.34828 * 1 2 3 27 27 H 1.00900 * 111.00528 * 45.24602 * 4 2 1 28 28 H 1.08002 * 119.96760 * 179.97438 * 8 6 5 29 29 H 1.07997 * 119.88633 * 180.26796 * 11 9 8 30 30 H 0.97005 * 119.99659 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8959 1.0268 0.0000 4 7 2.0261 -0.6998 1.1906 5 6 3.4084 -0.9265 1.1315 6 6 4.0926 -1.1854 2.3170 7 9 3.4232 -1.2034 3.4904 8 6 5.4542 -1.4237 2.2971 9 6 6.1449 -1.4002 1.0974 10 9 7.4762 -1.6294 1.0797 11 6 5.4708 -1.1475 -0.0837 12 6 4.1036 -0.9052 -0.0701 13 8 3.4737 -0.6448 -1.2488 14 6 2.0450 -0.7302 -1.2472 15 1 1.7381 -1.7757 -1.2163 16 6 1.4936 -0.0736 -2.4864 17 1 0.8196 0.7657 -2.3986 18 6 1.8495 -0.5444 -3.7325 19 7 2.6706 -1.5662 -3.8395 20 14 1.1655 0.2691 -5.2687 21 1 0.2705 1.3882 -4.8794 22 1 2.2851 0.7932 -6.0916 23 1 0.3968 -0.7280 -6.0563 24 1 -0.3634 -1.0276 0.0063 25 1 -0.3634 0.5193 0.8868 26 1 -0.3634 0.5084 -0.8931 27 1 1.5243 -1.5626 1.3384 28 1 5.9803 -1.6235 3.2189 29 1 6.0105 -1.1339 -1.0190 30 1 2.9207 -1.8977 -4.7162 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213855993.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:42 Heat of formation + Delta-G solvation = -120.310102 kcal Electronic energy + Delta-G solvation = -18968.114754 eV Core-core repulsion = 15591.666473 eV Total energy + Delta-G solvation = -3376.448281 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.081 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.01951 -49.93411 -41.70092 -38.27514 -36.75866 -34.93956 -32.72416 -31.23092 -28.77882 -28.41541 -25.34491 -24.21265 -23.46277 -21.42700 -19.62350 -19.14247 -18.46369 -17.84567 -17.27534 -16.98436 -16.82069 -16.53763 -16.32458 -15.93737 -15.53346 -15.21605 -15.11416 -14.64610 -14.27674 -13.72614 -13.31865 -13.00099 -12.92437 -12.85830 -12.75203 -12.54163 -12.21134 -12.05593 -11.81047 -11.26291 -10.78120 -10.33249 -9.39127 -8.93620 -8.29320 -6.52805 -0.12045 0.10634 1.39808 1.43000 1.54802 2.27768 2.32605 2.43025 2.74636 2.96715 3.26167 3.38834 3.68781 3.88754 4.04483 4.13586 4.21300 4.37471 4.58702 4.79251 4.86621 4.94447 4.96243 5.06742 5.19333 5.31407 5.54226 5.63743 5.67592 6.02079 6.17463 6.50318 6.87188 7.24956 8.78000 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.025341 B = 0.007368 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.662338 B = 3799.181270 C = 4778.547705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.061 3.939 3 H 0.074 0.926 4 N -0.616 5.616 5 C -0.036 4.036 6 C 0.156 3.844 7 F -0.122 7.122 8 C -0.210 4.210 9 C 0.151 3.849 10 F -0.128 7.128 11 C -0.202 4.202 12 C 0.131 3.869 13 O -0.307 6.307 14 C 0.184 3.816 15 H 0.008 0.992 16 C -0.542 4.542 17 H 0.087 0.913 18 C 0.026 3.974 19 N -0.895 5.895 20 Si 0.968 3.032 21 H -0.255 1.255 22 H -0.283 1.283 23 H -0.276 1.276 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.357 0.643 28 H 0.179 0.821 29 H 0.138 0.862 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.051 0.416 9.369 9.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.048 4.048 3 H 0.092 0.908 4 N -0.245 5.245 5 C -0.136 4.136 6 C 0.134 3.866 7 F -0.100 7.100 8 C -0.230 4.230 9 C 0.131 3.869 10 F -0.106 7.106 11 C -0.222 4.222 12 C 0.080 3.920 13 O -0.220 6.220 14 C 0.130 3.870 15 H 0.026 0.974 16 C -0.579 4.579 17 H 0.105 0.895 18 C -0.178 4.178 19 N -0.531 5.531 20 Si 0.792 3.208 21 H -0.179 1.179 22 H -0.209 1.209 23 H -0.201 1.201 24 H 0.076 0.924 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.183 0.817 28 H 0.196 0.804 29 H 0.156 0.844 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.194 0.902 9.483 9.600 hybrid contribution 0.020 -0.579 -1.436 1.548 sum 1.214 0.323 8.047 8.144 Atomic orbital electron populations 1.21627 0.90685 1.02675 1.02997 1.22260 0.98455 0.97428 0.86609 0.90784 1.57823 1.00081 1.27310 1.39333 1.18873 0.92271 1.10861 0.91562 1.16731 0.89117 1.01228 0.79500 1.91490 1.80507 1.93689 1.44304 1.20813 0.92345 1.10494 0.99318 1.16629 0.77522 1.00056 0.92724 1.91506 1.29922 1.91916 1.97257 1.20469 0.92814 1.09784 0.99135 1.19135 0.92678 0.93630 0.86554 1.86897 1.25929 1.81705 1.27447 1.20912 0.75102 0.95126 0.95895 0.97436 1.21365 1.28264 1.18419 0.89811 0.89491 1.26042 0.94062 0.94667 1.03019 1.70162 1.32984 1.24760 1.25237 0.85357 0.78266 0.78890 0.78294 1.17864 1.20937 1.20101 0.92366 0.90551 0.90763 0.81693 0.80401 0.84439 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.95 9.08 71.98 0.65 -3.30 16 2 C 0.06 2.42 2.86 45.08 0.13 2.55 16 3 H 0.07 3.10 8.14 -2.38 -0.02 3.08 16 4 N -0.62 -22.24 6.15 -317.06 -1.95 -24.19 16 5 C -0.04 -1.38 6.16 38.20 0.24 -1.14 16 6 C 0.16 5.04 7.30 22.52 0.16 5.20 16 7 F -0.12 -3.70 17.01 44.97 0.76 -2.94 16 8 C -0.21 -5.95 9.99 22.32 0.22 -5.73 16 9 C 0.15 4.79 7.30 22.34 0.16 4.95 16 10 F -0.13 -3.77 17.27 44.97 0.78 -2.99 16 11 C -0.20 -7.70 9.92 22.44 0.22 -7.47 16 12 C 0.13 5.65 6.47 22.56 0.15 5.80 16 13 O -0.31 -15.82 9.46 -95.39 -0.90 -16.73 16 14 C 0.18 8.99 2.44 29.99 0.07 9.06 16 15 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 16 C -0.54 -27.82 8.13 25.60 0.21 -27.61 16 17 H 0.09 4.18 6.50 -2.91 -0.02 4.16 16 18 C 0.03 1.38 5.40 84.65 0.46 1.84 16 19 N -0.90 -50.79 12.85 21.45 0.28 -50.51 16 20 Si 0.97 40.90 29.54 68.60 2.03 42.93 16 21 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 22 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 23 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 24 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.07 2.48 6.47 -2.39 -0.02 2.47 16 27 H 0.36 11.75 8.62 -89.69 -0.77 10.98 16 28 H 0.18 3.78 8.06 -2.91 -0.02 3.75 16 29 H 0.14 5.31 8.06 -2.91 -0.02 5.28 16 30 H 0.27 14.26 8.31 -92.70 -0.77 13.49 16 Total: -1.00 -58.29 267.21 4.08 -54.21 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.42 Total: 16.06 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: 2.68 Total: -15.84 kcal Atomic # 7 Polarization: -73.03 SS G_CDS: -1.68 Total: -74.70 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.90 Total: -16.73 kcal Atomic # 9 Polarization: -7.47 SS G_CDS: 1.54 Total: -5.93 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -58.29 4.08 -54.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213855993.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.101 kcal (2) G-P(sol) polarization free energy of solvation -58.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds