Wall clock time and date at job start Mon Mar 30 2020 06:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35922 * 116.99856 * 2 1 4 4 C 1.38602 * 120.02196 * 359.97438 * 3 2 1 5 5 C 1.38790 * 119.88182 * 179.97438 * 4 3 2 6 6 N 1.39741 * 120.03424 * 179.97438 * 5 4 3 7 7 C 1.46491 * 120.00071 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.47167 * 35.00656 * 7 6 5 9 9 C 1.52999 * 109.47583 * 275.00077 * 7 6 5 10 10 C 1.50701 * 109.47149 * 154.99734 * 7 6 5 11 11 H 1.08005 * 120.00063 * 95.25914 * 10 7 6 12 12 C 1.37878 * 120.00289 * 275.26150 * 10 7 6 13 13 N 1.31506 * 120.00187 * 355.42548 * 12 10 7 14 14 Si 1.86807 * 119.99769 * 175.15354 * 12 10 7 15 15 H 1.48493 * 109.47204 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.46923 * 119.99913 * 14 12 10 17 17 H 1.48498 * 109.47163 * 239.99654 * 14 12 10 18 18 C 1.38941 * 119.93200 * 0.25104 * 5 4 3 19 19 C 1.38145 * 120.04185 * 359.49643 * 18 5 4 20 20 C 1.38287 * 120.11115 * 0.50378 * 19 18 5 21 21 Cl 1.73599 * 119.96021 * 179.76934 * 20 19 18 22 22 H 1.08997 * 109.47027 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46949 * 300.00053 * 1 2 3 24 24 H 1.08995 * 109.47185 * 60.00514 * 1 2 3 25 25 H 1.07997 * 120.05520 * 359.97438 * 4 3 2 26 26 H 0.97001 * 119.99640 * 359.97438 * 6 5 4 27 27 H 1.08998 * 109.47222 * 175.02647 * 9 7 6 28 28 H 1.08996 * 109.46887 * 295.02694 * 9 7 6 29 29 H 1.08998 * 109.46728 * 55.02651 * 9 7 6 30 30 H 0.97007 * 119.99649 * 4.85976 * 13 12 10 31 31 H 1.08002 * 119.97791 * 179.74966 * 18 5 4 32 32 H 1.07997 * 119.94268 * 180.23584 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2916 2.3738 -0.0005 5 6 1.9247 3.6089 0.0000 6 7 1.1672 4.7831 -0.0011 7 6 1.8362 6.0864 0.0001 8 1 2.7518 6.0253 -0.5881 9 6 2.1787 6.4826 1.4376 10 6 0.9209 7.1214 -0.6018 11 1 0.3014 7.7320 0.0383 12 6 0.8744 7.2887 -1.9696 13 7 1.6926 6.6096 -2.7434 14 14 -0.3561 8.4746 -2.7241 15 1 -1.1604 9.1052 -1.6469 16 1 0.3699 9.5261 -3.4807 17 1 -1.2562 7.7346 -3.6447 18 6 3.3125 3.6766 -0.0042 19 6 4.0616 2.5159 0.0016 20 6 3.4326 1.2843 0.0011 21 17 4.3778 -0.1718 0.0023 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 0.2131 2.3187 -0.0014 26 1 0.1984 4.7352 -0.0026 27 1 2.7539 7.4085 1.4320 28 1 1.2586 6.6299 2.0029 29 1 2.7678 5.6918 1.9018 30 1 2.2797 5.9398 -2.3590 31 1 3.8059 4.6373 -0.0079 32 1 5.1401 2.5704 0.0022 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227939242.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:24 Heat of formation + Delta-G solvation = -31.388669 kcal Electronic energy + Delta-G solvation = -16608.403669 eV Core-core repulsion = 13787.607991 eV Total energy + Delta-G solvation = -2820.795678 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.79660 -37.71855 -36.15134 -35.14194 -32.57203 -30.51190 -29.55585 -27.87772 -26.65186 -24.75734 -22.32501 -21.85222 -20.37221 -17.82250 -17.43521 -16.00836 -15.82932 -15.56471 -15.16145 -14.14739 -13.91757 -13.71831 -13.49505 -13.08441 -13.00713 -12.33403 -12.03602 -11.58054 -11.39082 -11.15741 -11.14649 -11.04007 -10.97387 -10.81994 -10.36501 -10.28725 -10.06308 -9.12278 -8.88052 -8.58053 -8.03700 -6.65630 -6.59331 -4.46819 1.81386 2.00048 2.76622 3.30072 3.31062 3.46067 3.47194 4.22525 4.27733 4.35547 5.13766 5.20860 5.27398 5.30125 5.51232 5.69342 5.72951 5.90457 6.03955 6.18040 6.31822 6.43637 6.46664 6.68331 6.82456 6.83941 7.03853 7.06787 7.56256 7.72997 8.14962 8.30524 8.55189 8.72443 9.33573 10.72445 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.028352 B = 0.005469 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.331942 B = 5118.668932 C = 5430.528656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.311 6.311 3 C 0.183 3.817 4 C -0.299 4.299 5 C 0.274 3.726 6 N -0.708 5.708 7 C 0.235 3.765 8 H 0.048 0.952 9 C -0.146 4.146 10 C -0.609 4.609 11 H 0.057 0.943 12 C 0.032 3.968 13 N -0.887 5.887 14 Si 1.074 2.926 15 H -0.287 1.287 16 H -0.284 1.284 17 H -0.286 1.286 18 C -0.227 4.227 19 C -0.025 4.025 20 C -0.149 4.149 21 Cl -0.090 7.090 22 H 0.095 0.905 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.126 0.874 26 H 0.388 0.612 27 H 0.051 0.949 28 H 0.042 0.958 29 H 0.032 0.968 30 H 0.277 0.723 31 H 0.129 0.871 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.379 -8.826 5.349 10.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.224 6.224 3 C 0.136 3.864 4 C -0.324 4.324 5 C 0.160 3.840 6 N -0.329 5.329 7 C 0.134 3.866 8 H 0.066 0.934 9 C -0.205 4.205 10 C -0.647 4.647 11 H 0.075 0.925 12 C -0.177 4.177 13 N -0.521 5.521 14 Si 0.902 3.098 15 H -0.213 1.213 16 H -0.210 1.210 17 H -0.212 1.212 18 C -0.250 4.250 19 C -0.045 4.045 20 C -0.179 4.179 21 Cl -0.062 7.062 22 H 0.113 0.887 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.143 0.857 26 H 0.222 0.778 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.147 0.853 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.611 -8.215 3.920 9.123 hybrid contribution -0.128 -0.697 1.400 1.569 sum -0.738 -8.912 5.320 10.405 Atomic orbital electron populations 1.23004 0.78781 1.03310 1.01525 1.86098 1.21031 1.26752 1.88498 1.18288 0.90102 0.84030 0.93993 1.20454 0.99336 0.90642 1.21945 1.18016 0.91417 0.87139 0.87414 1.47051 1.07942 1.03424 1.74530 1.18959 0.94824 0.80480 0.92288 0.93394 1.22105 0.99957 0.99613 0.98788 1.22135 1.27946 1.20328 0.94330 0.92488 1.26023 0.98105 0.99368 0.94225 1.70724 1.19854 1.22121 1.39365 0.83470 0.75377 0.75536 0.75445 1.21293 1.20993 1.21181 1.20555 0.92103 0.98271 1.14079 1.20508 0.99431 0.89493 0.95053 1.19558 0.87988 0.87462 1.22852 1.98280 1.72392 1.37592 1.97911 0.88659 0.92767 0.92614 0.85659 0.77764 0.92981 0.93897 0.94870 0.91159 0.85316 0.85346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.31 -4.94 9.95 -19.49 -0.19 -5.14 16 3 C 0.18 3.21 6.68 -39.22 -0.26 2.95 16 4 C -0.30 -5.33 8.88 -39.24 -0.35 -5.68 16 5 C 0.27 5.36 6.63 -83.79 -0.56 4.80 16 6 N -0.71 -14.76 5.24 -53.30 -0.28 -15.04 16 7 C 0.23 5.33 1.98 -69.09 -0.14 5.19 16 8 H 0.05 1.18 5.01 -51.93 -0.26 0.92 16 9 C -0.15 -2.91 9.42 37.16 0.35 -2.56 16 10 C -0.61 -15.41 8.50 -34.44 -0.29 -15.71 16 11 H 0.06 1.45 7.81 -52.48 -0.41 1.04 16 12 C 0.03 0.84 5.46 -17.82 -0.10 0.74 16 13 N -0.89 -24.95 13.63 55.43 0.76 -24.19 16 14 Si 1.07 23.34 29.91 -169.99 -5.08 18.26 16 15 H -0.29 -5.93 7.11 56.52 0.40 -5.53 16 16 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.29 -6.17 7.11 56.52 0.40 -5.76 16 18 C -0.23 -4.28 8.87 -39.36 -0.35 -4.63 16 19 C -0.03 -0.43 9.82 -39.60 -0.39 -0.82 16 20 C -0.15 -2.61 6.33 -39.34 -0.25 -2.86 16 21 Cl -0.09 -1.43 28.49 -51.86 -1.48 -2.91 16 22 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 24 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 25 H 0.13 2.00 6.30 -52.49 -0.33 1.67 16 26 H 0.39 7.88 8.60 -40.82 -0.35 7.52 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.03 0.61 7.82 -51.93 -0.41 0.20 16 30 H 0.28 7.82 6.66 -40.82 -0.27 7.55 16 31 H 0.13 2.46 6.20 -52.49 -0.33 2.13 16 32 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 287.12 15.07 4.33 4.33 Total: -1.00 -27.66 287.12 -6.93 -34.59 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -3.64 Total: 7.34 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: -1.34 Total: -17.24 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.48 Total: -39.23 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.19 Total: -5.14 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.08 Total: 18.26 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -1.48 Total: -2.91 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.66 -6.93 -34.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227939242.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.205 kcal (2) G-P(sol) polarization free energy of solvation -27.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds