Wall clock time and date at job start Mon Mar 30 2020 06:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35922 * 116.99856 * 2 1 4 4 C 1.38602 * 120.02196 * 359.97438 * 3 2 1 5 5 C 1.38790 * 119.88182 * 179.97438 * 4 3 2 6 6 N 1.39741 * 120.03424 * 179.97438 * 5 4 3 7 7 C 1.46491 * 120.00071 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.47167 * 35.00656 * 7 6 5 9 9 C 1.52999 * 109.47583 * 275.00077 * 7 6 5 10 10 C 1.50701 * 109.47149 * 154.99734 * 7 6 5 11 11 H 1.08005 * 120.00063 * 95.25914 * 10 7 6 12 12 C 1.37878 * 120.00289 * 275.26150 * 10 7 6 13 13 N 1.31506 * 120.00187 * 355.42548 * 12 10 7 14 14 Si 1.86807 * 119.99769 * 175.15354 * 12 10 7 15 15 H 1.48493 * 109.47204 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.46923 * 119.99913 * 14 12 10 17 17 H 1.48498 * 109.47163 * 239.99654 * 14 12 10 18 18 C 1.38941 * 119.93200 * 0.25104 * 5 4 3 19 19 C 1.38145 * 120.04185 * 359.49643 * 18 5 4 20 20 C 1.38287 * 120.11115 * 0.50378 * 19 18 5 21 21 Cl 1.73599 * 119.96021 * 179.76934 * 20 19 18 22 22 H 1.08997 * 109.47027 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46949 * 300.00053 * 1 2 3 24 24 H 1.08995 * 109.47185 * 60.00514 * 1 2 3 25 25 H 1.07997 * 120.05520 * 359.97438 * 4 3 2 26 26 H 0.97001 * 119.99640 * 359.97438 * 6 5 4 27 27 H 1.08998 * 109.47222 * 175.02647 * 9 7 6 28 28 H 1.08996 * 109.46887 * 295.02694 * 9 7 6 29 29 H 1.08998 * 109.46728 * 55.02651 * 9 7 6 30 30 H 0.97007 * 119.99649 * 4.85976 * 13 12 10 31 31 H 1.08002 * 119.97791 * 179.74966 * 18 5 4 32 32 H 1.07997 * 119.94268 * 180.23584 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2916 2.3738 -0.0005 5 6 1.9247 3.6089 0.0000 6 7 1.1672 4.7831 -0.0011 7 6 1.8362 6.0864 0.0001 8 1 2.7518 6.0253 -0.5881 9 6 2.1787 6.4826 1.4376 10 6 0.9209 7.1214 -0.6018 11 1 0.3014 7.7320 0.0383 12 6 0.8744 7.2887 -1.9696 13 7 1.6926 6.6096 -2.7434 14 14 -0.3561 8.4746 -2.7241 15 1 -1.1604 9.1052 -1.6469 16 1 0.3699 9.5261 -3.4807 17 1 -1.2562 7.7346 -3.6447 18 6 3.3125 3.6766 -0.0042 19 6 4.0616 2.5159 0.0016 20 6 3.4326 1.2843 0.0011 21 17 4.3778 -0.1718 0.0023 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 0.2131 2.3187 -0.0014 26 1 0.1984 4.7352 -0.0026 27 1 2.7539 7.4085 1.4320 28 1 1.2586 6.6299 2.0029 29 1 2.7678 5.6918 1.9018 30 1 2.2797 5.9398 -2.3590 31 1 3.8059 4.6373 -0.0079 32 1 5.1401 2.5704 0.0022 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227939242.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:24 Heat of formation + Delta-G solvation = -47.165054 kcal Electronic energy + Delta-G solvation = -16609.087785 eV Core-core repulsion = 13787.607991 eV Total energy + Delta-G solvation = -2821.479794 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.13495 -39.12625 -37.54664 -36.69258 -34.35586 -32.12523 -30.93382 -29.25323 -27.88075 -26.66879 -23.84656 -23.29342 -21.95939 -19.29976 -19.12042 -17.48926 -17.20784 -16.72251 -16.64883 -15.78909 -15.57439 -15.34572 -14.89509 -14.49424 -14.40685 -13.87990 -13.37342 -13.13600 -12.83072 -12.81124 -12.69910 -12.44608 -12.28639 -12.20896 -11.95400 -11.78132 -11.60475 -10.93475 -10.54633 -10.43471 -9.40757 -8.69688 -8.13359 -6.51235 0.41607 0.56439 1.40963 1.54868 1.59959 1.77934 2.29897 2.51017 2.68340 2.81258 3.34658 3.86195 4.18837 4.25299 4.37981 4.40824 4.46932 4.58102 4.61338 4.71922 4.74469 4.79549 4.97243 5.15289 5.29598 5.34422 5.41748 5.63911 5.83960 6.12920 6.31852 6.48852 6.69251 7.09599 7.36480 8.67812 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.028352 B = 0.005469 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.331942 B = 5118.668932 C = 5430.528656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.320 6.320 3 C 0.181 3.819 4 C -0.297 4.297 5 C 0.256 3.744 6 N -0.716 5.716 7 C 0.239 3.761 8 H 0.023 0.977 9 C -0.136 4.136 10 C -0.615 4.615 11 H 0.054 0.946 12 C -0.013 4.013 13 N -0.919 5.919 14 Si 1.118 2.882 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.284 1.284 18 C -0.242 4.242 19 C -0.020 4.020 20 C -0.157 4.157 21 Cl -0.074 7.074 22 H 0.126 0.874 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.142 0.858 26 H 0.390 0.610 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.263 0.737 31 H 0.120 0.880 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.045 -9.727 5.904 11.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.233 6.233 3 C 0.133 3.867 4 C -0.322 4.322 5 C 0.145 3.855 6 N -0.338 5.338 7 C 0.137 3.863 8 H 0.041 0.959 9 C -0.195 4.195 10 C -0.653 4.653 11 H 0.072 0.928 12 C -0.216 4.216 13 N -0.555 5.555 14 Si 0.941 3.059 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.210 1.210 18 C -0.265 4.265 19 C -0.040 4.040 20 C -0.186 4.186 21 Cl -0.046 7.046 22 H 0.144 0.856 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.159 0.841 26 H 0.224 0.776 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.138 0.862 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.273 -9.149 4.500 10.275 hybrid contribution 0.107 -0.593 1.293 1.427 sum -1.166 -9.743 5.793 11.394 Atomic orbital electron populations 1.23336 0.76525 1.05591 1.02010 1.86098 1.23340 1.25741 1.88079 1.18396 0.90354 0.84578 0.93324 1.20589 1.00290 0.90063 1.21243 1.18165 0.91696 0.87192 0.88496 1.46473 1.07855 1.03237 1.76248 1.18756 0.93375 0.80866 0.93255 0.95904 1.21984 1.00291 1.00044 0.97166 1.22413 1.27714 1.20798 0.94417 0.92800 1.27257 0.98804 1.00276 0.95233 1.70843 1.21479 1.23458 1.39690 0.82901 0.73735 0.73990 0.75299 1.19417 1.20732 1.20961 1.20598 0.92170 0.98621 1.15148 1.20716 1.00543 0.88829 0.93893 1.19797 0.88524 0.88207 1.22069 1.98284 1.71929 1.36560 1.97820 0.85601 0.91862 0.92491 0.84054 0.77618 0.92774 0.93527 0.93695 0.92583 0.86244 0.83069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.81 113.37 1.11 1.52 16 2 O -0.32 -9.46 9.95 -92.67 -0.92 -10.38 16 3 C 0.18 6.07 6.68 22.50 0.15 6.22 16 4 C -0.30 -10.28 8.88 22.49 0.20 -10.08 16 5 C 0.26 9.97 6.63 38.18 0.25 10.22 16 6 N -0.72 -29.97 5.24 -322.55 -1.69 -31.66 16 7 C 0.24 10.98 1.98 44.25 0.09 11.07 16 8 H 0.02 1.18 5.01 -2.39 -0.01 1.16 16 9 C -0.14 -5.38 9.42 71.98 0.68 -4.70 16 10 C -0.62 -31.27 8.50 25.60 0.22 -31.05 16 11 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 12 C -0.01 -0.69 5.46 84.66 0.46 -0.23 16 13 N -0.92 -52.69 13.63 21.45 0.29 -52.39 16 14 Si 1.12 46.79 29.91 68.60 2.05 48.84 16 15 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 16 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 17 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 18 C -0.24 -9.15 8.87 22.42 0.20 -8.95 16 19 C -0.02 -0.68 9.82 22.26 0.22 -0.46 16 20 C -0.16 -5.24 6.33 22.43 0.14 -5.10 16 21 Cl -0.07 -2.22 28.49 -2.72 -0.08 -2.29 16 22 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.06 1.21 7.66 -2.39 -0.02 1.19 16 24 H 0.06 1.18 7.66 -2.39 -0.02 1.16 16 25 H 0.14 4.30 6.30 -2.91 -0.02 4.28 16 26 H 0.39 15.84 8.60 -92.71 -0.80 15.04 16 27 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.04 1.63 7.82 -2.39 -0.02 1.62 16 30 H 0.26 15.39 6.66 -92.70 -0.62 14.77 16 31 H 0.12 4.68 6.20 -2.91 -0.02 4.66 16 32 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -58.44 287.12 3.87 -54.57 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.50 Total: 24.84 kcal Atomic # 6 Polarization: -35.25 SS G_CDS: 3.72 Total: -31.53 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -1.40 Total: -84.06 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.92 Total: -10.38 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.05 Total: 48.84 kcal Atomic # 17 Polarization: -2.22 SS G_CDS: -0.08 Total: -2.29 kcal Total: -58.44 3.87 -54.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227939242.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.409 kcal (2) G-P(sol) polarization free energy of solvation -58.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds