Wall clock time and date at job start Mon Mar 30 2020 06:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35923 * 117.00182 * 2 1 4 4 C 1.38603 * 120.02100 * 0.28213 * 3 2 1 5 5 C 1.38796 * 119.88309 * 180.29648 * 4 3 2 6 6 N 1.39736 * 120.03442 * 179.72393 * 5 4 3 7 7 C 1.46499 * 119.99932 * 179.72545 * 6 5 4 8 8 C 1.53000 * 109.46840 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.46735 * 180.02562 * 8 7 6 10 10 H 1.07996 * 119.99928 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99611 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00327 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99743 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46828 * 90.00241 * 13 11 9 15 15 H 1.48494 * 109.47178 * 209.99936 * 13 11 9 16 16 H 1.48500 * 109.47075 * 330.00183 * 13 11 9 17 17 C 1.38942 * 119.93129 * 359.44611 * 5 4 3 18 18 C 1.38150 * 120.03974 * 0.25237 * 17 5 4 19 19 C 1.38283 * 120.11683 * 0.02857 * 18 17 5 20 20 Cl 1.73596 * 119.96428 * 179.97438 * 19 18 17 21 21 H 1.09000 * 109.46765 * 59.99606 * 1 2 3 22 22 H 1.08994 * 109.46940 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46534 * 300.00356 * 1 2 3 24 24 H 1.08000 * 120.05676 * 0.03854 * 4 3 2 25 25 H 0.97000 * 119.99648 * 359.71668 * 6 5 4 26 26 H 1.09002 * 109.47391 * 59.99565 * 7 6 5 27 27 H 1.09001 * 109.46813 * 299.99621 * 7 6 5 28 28 H 1.09001 * 109.47194 * 299.99493 * 8 7 6 29 29 H 1.08992 * 109.47399 * 59.99666 * 8 7 6 30 30 H 0.97000 * 120.00354 * 180.02562 * 12 11 9 31 31 H 1.07999 * 119.98049 * 180.27757 * 17 5 4 32 32 H 1.07998 * 119.93923 * 180.02562 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2917 2.3738 0.0059 5 6 1.9248 3.6089 -0.0003 6 7 1.1673 4.7831 -0.0002 7 6 1.8364 6.0864 -0.0007 8 6 0.7859 7.1989 -0.0012 9 6 1.4742 8.5396 -0.0023 10 1 2.5528 8.5928 -0.0023 11 6 0.7267 9.6982 -0.0034 12 7 -0.5868 9.6333 -0.0039 13 14 1.5798 11.3600 -0.0041 14 1 1.8064 11.7995 -1.4045 15 1 0.7269 12.3545 0.6948 16 1 2.8843 11.2471 0.6965 17 6 3.3126 3.6766 -0.0008 18 6 4.0616 2.5158 -0.0004 19 6 3.4328 1.2843 -0.0001 20 17 4.3779 -0.1719 -0.0002 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5139 0.8900 24 1 0.2131 2.3188 0.0111 25 1 0.1985 4.7352 0.0000 26 1 2.4591 6.1749 -0.8910 27 1 2.4597 6.1751 0.8890 28 1 0.1629 7.1100 -0.8911 29 1 0.1629 7.1106 0.8888 30 1 -1.1127 10.4484 -0.0051 31 1 3.8060 4.6373 -0.0012 32 1 5.1402 2.5704 -0.0004 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232200809.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:55 Heat of formation + Delta-G solvation = -31.244654 kcal Electronic energy + Delta-G solvation = -15860.663977 eV Core-core repulsion = 13039.874543 eV Total energy + Delta-G solvation = -2820.789433 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.10401 -37.93822 -36.36898 -35.11688 -33.08058 -30.76770 -29.94331 -28.28779 -26.92648 -24.66278 -22.55997 -21.74394 -20.59426 -18.20944 -16.64557 -16.46241 -16.13200 -15.81246 -15.27656 -14.58891 -14.25839 -14.25151 -13.91604 -13.39948 -13.08303 -12.40030 -12.23195 -11.73989 -11.70386 -11.39196 -11.36963 -11.15429 -11.02567 -10.69556 -10.57350 -10.36356 -9.68471 -9.38127 -9.37231 -8.51567 -8.34921 -7.10414 -6.16242 -4.20074 1.46591 1.62063 2.48268 3.21031 3.24211 3.30871 3.33725 3.82099 3.87290 4.36338 4.86099 4.99649 5.08389 5.20975 5.26254 5.37117 5.42481 5.60893 5.66133 6.01836 6.10684 6.17179 6.36445 6.46436 6.59867 6.68153 7.25436 7.36560 7.52597 7.62930 7.83466 8.00775 8.23078 8.85685 9.45339 10.95344 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.040120 B = 0.003758 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.736511 B = 7448.326956 C = 8120.313327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.308 6.308 3 C 0.182 3.818 4 C -0.288 4.288 5 C 0.269 3.731 6 N -0.730 5.730 7 C 0.122 3.878 8 C 0.013 3.987 9 C -0.524 4.524 10 H 0.059 0.941 11 C 0.060 3.940 12 N -0.893 5.893 13 Si 0.897 3.103 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.272 1.272 17 C -0.224 4.224 18 C -0.024 4.024 19 C -0.139 4.139 20 Cl -0.081 7.081 21 H 0.056 0.944 22 H 0.098 0.902 23 H 0.056 0.944 24 H 0.131 0.869 25 H 0.399 0.601 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.263 0.737 31 H 0.133 0.867 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.905 -16.795 0.011 17.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.221 6.221 3 C 0.135 3.865 4 C -0.313 4.313 5 C 0.159 3.841 6 N -0.354 5.354 7 C -0.001 4.001 8 C -0.025 4.025 9 C -0.563 4.563 10 H 0.077 0.923 11 C -0.142 4.142 12 N -0.532 5.532 13 Si 0.725 3.275 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.197 1.197 17 C -0.247 4.247 18 C -0.044 4.044 19 C -0.168 4.168 20 Cl -0.053 7.053 21 H 0.075 0.925 22 H 0.116 0.884 23 H 0.075 0.925 24 H 0.149 0.851 25 H 0.233 0.767 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.151 0.849 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.994 -16.766 0.016 17.235 hybrid contribution -0.275 1.023 -0.013 1.059 sum 3.720 -15.743 0.003 16.177 Atomic orbital electron populations 1.23060 0.78408 1.03698 1.01629 1.86127 1.21311 1.26383 1.88265 1.18296 0.90140 0.84209 0.93834 1.20480 0.99721 0.90428 1.20642 1.17751 0.91143 0.86330 0.88890 1.45382 1.08369 1.03607 1.78022 1.21794 0.97439 0.80982 0.99895 1.19288 0.93703 0.91554 0.97908 1.21021 0.93173 0.90343 1.51754 0.92260 1.25002 0.94837 0.99524 0.94879 1.69950 1.04608 1.28524 1.50079 0.86509 0.79494 0.83299 0.78237 1.20516 1.21123 1.19699 1.20587 0.91822 0.98712 1.13551 1.20572 0.99799 0.89331 0.94693 1.19700 0.88187 0.87927 1.20975 1.98305 1.72146 1.37076 1.97764 0.92513 0.88383 0.92520 0.85118 0.76657 0.92885 0.92878 0.95963 0.95954 0.92760 0.84878 0.84825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.02 9.95 -19.50 -0.19 -4.21 16 3 C 0.18 2.60 6.68 -39.22 -0.26 2.34 16 4 C -0.29 -4.04 8.88 -39.24 -0.35 -4.39 16 5 C 0.27 4.15 6.65 -83.79 -0.56 3.59 16 6 N -0.73 -12.08 5.73 -58.64 -0.34 -12.41 16 7 C 0.12 2.33 4.85 -4.04 -0.02 2.31 16 8 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 9 C -0.52 -14.01 9.11 -34.44 -0.31 -14.32 16 10 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 13 Si 0.90 20.81 29.54 -169.99 -5.02 15.78 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 17 C -0.22 -3.31 9.31 -39.35 -0.37 -3.67 16 18 C -0.02 -0.33 9.82 -39.60 -0.39 -0.72 16 19 C -0.14 -1.98 6.33 -39.34 -0.25 -2.23 16 20 Cl -0.08 -1.08 28.49 -51.86 -1.48 -2.56 16 21 H 0.06 0.48 7.67 -51.93 -0.40 0.08 16 22 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.48 7.65 -51.93 -0.40 0.08 16 24 H 0.13 1.58 6.30 -52.49 -0.33 1.25 16 25 H 0.40 6.21 8.48 -40.82 -0.35 5.86 16 26 H 0.05 1.01 7.95 -51.93 -0.41 0.60 16 27 H 0.05 1.01 7.95 -51.93 -0.41 0.60 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.13 1.92 6.73 -52.49 -0.35 1.57 16 32 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 291.56 15.07 4.39 4.39 Total: -1.00 -28.98 291.56 -7.53 -36.52 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -3.88 Total: 1.60 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -1.75 Total: -14.15 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.40 Total: -37.38 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: -0.19 Total: -4.21 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.48 Total: -2.56 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.98 -7.53 -36.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232200809.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.272 kcal (2) G-P(sol) polarization free energy of solvation -28.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds