Wall clock time and date at job start Mon Mar 30 2020 06:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00081 * 2 1 4 4 C 1.50695 * 109.47416 * 270.00544 * 3 2 1 5 5 H 1.07999 * 120.00462 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99948 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00050 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 120.00185 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47089 * 89.99762 * 8 6 4 10 10 H 1.48496 * 109.47166 * 210.00133 * 8 6 4 11 11 H 1.48500 * 109.46869 * 329.99825 * 8 6 4 12 12 C 1.39669 * 119.99972 * 180.02562 * 2 1 3 13 13 C 1.38949 * 120.06745 * 359.97438 * 12 2 1 14 14 C 1.38084 * 119.94997 * 179.97438 * 13 12 2 15 15 C 1.38290 * 120.08920 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.93250 * 179.97438 * 15 14 13 17 17 O 1.42900 * 109.46924 * 0.02562 * 16 15 14 18 18 C 1.38387 * 120.13697 * 0.02562 * 15 14 13 19 19 Cl 1.73599 * 119.97517 * 179.97438 * 18 15 14 20 20 C 1.38240 * 120.04414 * 0.25475 * 18 15 14 21 21 H 1.08998 * 109.47030 * 269.99468 * 1 2 3 22 22 H 1.09005 * 109.47437 * 29.99382 * 1 2 3 23 23 H 1.09003 * 109.47265 * 149.99334 * 1 2 3 24 24 H 1.09002 * 109.46911 * 30.01048 * 3 2 1 25 25 H 1.09003 * 109.47234 * 150.00166 * 3 2 1 26 26 H 0.97003 * 119.99944 * 179.97438 * 7 6 4 27 27 H 1.07996 * 120.02659 * 359.97438 * 13 12 2 28 28 H 1.08004 * 119.96056 * 179.97438 * 14 13 12 29 29 H 1.08997 * 109.47147 * 120.02438 * 16 15 14 30 30 H 1.08997 * 109.46943 * 240.02266 * 16 15 14 31 31 H 0.96704 * 113.99609 * 180.02562 * 17 16 15 32 32 H 1.08000 * 120.04350 * 179.71617 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4207 5 1 2.0980 1.0960 -2.2417 6 6 3.1268 2.8775 -1.6726 7 7 3.5542 3.6176 -0.6729 8 14 3.4375 3.4174 -3.4337 9 1 2.3077 4.2610 -3.8995 10 1 4.6982 4.1996 -3.4966 11 1 3.5536 2.2205 -4.3051 12 6 2.1634 -1.2096 -0.0005 13 6 1.4700 -2.4137 -0.0005 14 6 2.1629 -3.6081 -0.0016 15 6 3.5458 -3.6075 -0.0021 16 6 4.2984 -4.9131 -0.0027 17 8 3.3690 -5.9986 -0.0032 18 6 4.2400 -2.4103 -0.0011 19 17 5.9760 -2.4144 -0.0011 20 6 3.5520 -1.2113 0.0058 21 1 -0.3633 -0.0001 1.0276 22 1 -0.3634 0.8901 -0.5137 23 1 -0.3634 -0.8899 -0.5139 24 1 1.6085 2.0283 0.5140 25 1 3.1500 1.1384 0.5138 26 1 4.0317 4.4431 -0.8501 27 1 0.3901 -2.4155 0.0003 28 1 1.6241 -4.5442 -0.0012 29 1 4.9250 -4.9709 -0.8927 30 1 4.9250 -4.9716 0.8872 31 1 3.7843 -6.8719 -0.0032 32 1 4.0938 -0.2770 0.0113 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234265557.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:47 Heat of formation + Delta-G solvation = -47.130972 kcal Electronic energy + Delta-G solvation = -16475.300106 eV Core-core repulsion = 13653.821790 eV Total energy + Delta-G solvation = -2821.478316 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 4.02 seconds Orbital eigenvalues (eV) -40.66901 -38.26875 -37.47605 -36.53466 -34.74112 -31.85186 -31.68000 -29.64874 -27.54961 -25.99498 -23.91536 -23.20160 -21.26407 -18.68596 -18.42114 -18.17503 -16.87908 -16.31073 -16.09464 -15.93572 -15.69642 -15.34446 -14.83596 -14.52560 -14.11785 -13.84684 -13.56245 -13.19142 -13.05792 -12.84637 -12.61916 -12.50101 -12.44136 -12.18880 -11.76201 -11.71032 -11.60614 -11.20511 -10.64693 -10.32025 -9.66801 -8.39231 -7.90096 -6.38216 0.35541 0.63198 1.17301 1.36476 1.38182 1.48687 2.32837 2.55812 2.85157 3.06034 3.36478 3.99831 4.14420 4.29205 4.36339 4.49564 4.63003 4.64691 4.69525 4.73236 4.93910 4.99238 5.04851 5.18280 5.32089 5.46461 5.59359 5.66158 5.89152 6.04928 6.40980 6.77744 6.81136 7.00228 7.33471 8.82472 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.022377 B = 0.006427 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.003526 B = 4355.277944 C = 5091.786119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.625 5.625 3 C 0.264 3.736 4 C -0.543 4.543 5 H 0.050 0.950 6 C 0.015 3.985 7 N -0.925 5.925 8 Si 0.959 3.041 9 H -0.269 1.269 10 H -0.280 1.280 11 H -0.273 1.273 12 C 0.226 3.774 13 C -0.208 4.208 14 C -0.036 4.036 15 C -0.170 4.170 16 C 0.138 3.862 17 O -0.580 6.580 18 C 0.013 3.987 19 Cl -0.074 7.074 20 C -0.207 4.207 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.082 0.918 24 H 0.014 0.986 25 H 0.011 0.989 26 H 0.267 0.733 27 H 0.146 0.854 28 H 0.153 0.847 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.401 0.599 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.009 -16.145 1.560 16.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.331 5.331 3 C 0.142 3.858 4 C -0.581 4.581 5 H 0.069 0.931 6 C -0.185 4.185 7 N -0.565 5.565 8 Si 0.784 3.216 9 H -0.194 1.194 10 H -0.205 1.205 11 H -0.198 1.198 12 C 0.119 3.881 13 C -0.231 4.231 14 C -0.055 4.055 15 C -0.174 4.174 16 C 0.060 3.940 17 O -0.389 6.389 18 C -0.014 4.014 19 Cl -0.045 7.045 20 C -0.230 4.230 21 H 0.075 0.925 22 H 0.079 0.921 23 H 0.100 0.900 24 H 0.032 0.968 25 H 0.029 0.971 26 H 0.076 0.924 27 H 0.164 0.836 28 H 0.171 0.829 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.252 0.748 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.320 -15.273 1.613 15.415 hybrid contribution 1.017 0.659 -0.760 1.430 sum -0.302 -14.614 0.853 14.642 Atomic orbital electron populations 1.21688 0.78745 1.02933 1.01382 1.47006 1.05944 1.03428 1.76744 1.18839 0.91181 0.80172 0.95587 1.21756 1.36555 1.06563 0.93258 0.93136 1.25746 0.95025 0.96337 1.01348 1.70031 1.38874 1.14803 1.32772 0.85536 0.77962 0.78268 0.79833 1.19441 1.20503 1.19760 1.18020 0.90665 0.87022 0.92347 1.20988 1.00849 0.90177 1.11085 1.20786 0.92460 0.97841 0.94389 1.19436 0.94592 0.92848 1.10487 1.20595 0.89433 0.83216 1.00708 1.86357 1.36781 1.17923 1.97795 1.20335 0.83724 0.93784 1.03543 1.98317 1.10460 1.98922 1.96844 1.20519 0.93486 0.97106 1.11917 0.92464 0.92144 0.89986 0.96757 0.97057 0.92368 0.83623 0.82902 0.92033 0.91758 0.74804 0.87193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.15 10.19 127.77 1.30 4.45 16 2 N -0.62 -26.72 2.99 -726.57 -2.17 -28.89 16 3 C 0.26 13.67 4.92 85.63 0.42 14.09 16 4 C -0.54 -30.24 9.39 25.60 0.24 -30.00 16 5 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 6 C 0.01 0.84 5.46 84.65 0.46 1.30 16 7 N -0.93 -54.15 13.29 21.45 0.28 -53.86 16 8 Si 0.96 44.07 29.54 68.60 2.03 46.09 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 12 C 0.23 9.12 6.55 38.21 0.25 9.37 16 13 C -0.21 -6.80 9.21 22.40 0.21 -6.60 16 14 C -0.04 -1.08 9.37 22.25 0.21 -0.87 16 15 C -0.17 -5.28 5.89 -19.81 -0.12 -5.39 16 16 C 0.14 3.18 6.40 71.24 0.46 3.64 16 17 O -0.58 -11.36 12.13 -148.98 -1.81 -13.16 16 18 C 0.01 0.48 6.31 22.31 0.14 0.62 16 19 Cl -0.07 -2.37 27.97 -2.72 -0.08 -2.45 16 20 C -0.21 -8.75 8.99 22.42 0.20 -8.55 16 21 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 22 H 0.06 2.09 8.07 -2.38 -0.02 2.07 16 23 H 0.08 2.26 6.20 -2.39 -0.01 2.25 16 24 H 0.01 0.78 8.07 -2.39 -0.02 0.76 16 25 H 0.01 0.64 6.18 -2.39 -0.01 0.63 16 26 H 0.27 14.75 8.31 -92.71 -0.77 13.97 16 27 H 0.15 3.95 6.14 -2.91 -0.02 3.94 16 28 H 0.15 3.91 7.00 -2.91 -0.02 3.89 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.40 3.57 9.12 -74.05 -0.68 2.89 16 32 H 0.11 5.36 6.13 -2.91 -0.02 5.34 16 Total: -1.00 -64.54 287.36 2.50 -62.04 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 0.47 Total: 8.16 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 3.77 Total: -17.93 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -1.89 Total: -82.75 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -1.81 Total: -13.16 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 17 Polarization: -2.37 SS G_CDS: -0.08 Total: -2.45 kcal Total: -64.54 2.50 -62.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234265557.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.909 kcal (2) G-P(sol) polarization free energy of solvation -64.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.02 seconds