Wall clock time and date at job start Mon Mar 30 2020 07:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47031 * 2 1 4 4 C 1.50701 * 109.46846 * 239.99555 * 2 1 3 5 5 H 1.08002 * 119.99736 * 239.99686 * 4 2 1 6 6 C 1.37871 * 119.99670 * 60.00867 * 4 2 1 7 7 N 1.31513 * 120.00404 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99818 * 179.97438 * 6 4 2 9 9 H 1.48512 * 109.47214 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47571 * 119.99432 * 8 6 4 11 11 H 1.48505 * 109.47362 * 239.99959 * 8 6 4 12 12 N 1.46900 * 109.46799 * 119.99688 * 2 1 3 13 13 C 1.46901 * 111.00137 * 58.95461 * 12 2 1 14 14 C 1.39379 * 111.00146 * 294.99952 * 12 2 1 15 15 N 1.32321 * 119.63332 * 102.80212 * 14 12 2 16 16 C 1.31976 * 121.71064 * 179.97438 * 15 14 12 17 17 C 1.38663 * 120.77731 * 359.97438 * 16 15 14 18 18 N 1.40030 * 120.40772 * 180.02562 * 17 16 15 19 19 C 1.39373 * 119.18781 * 0.02562 * 17 16 15 20 20 C 1.38402 * 118.43499 * 359.75094 * 19 17 16 21 21 Cl 1.73609 * 120.42222 * 180.26058 * 20 19 17 22 22 H 1.08994 * 109.47668 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47143 * 300.00523 * 1 2 3 24 24 H 1.09005 * 109.46858 * 59.99970 * 1 2 3 25 25 H 0.97001 * 119.99699 * 180.02562 * 7 6 4 26 26 H 1.09001 * 109.47252 * 54.47842 * 13 12 2 27 27 H 1.08994 * 109.47882 * 174.48006 * 13 12 2 28 28 H 1.09002 * 109.47203 * 294.48477 * 13 12 2 29 29 H 1.08002 * 119.61098 * 180.02562 * 16 15 14 30 30 H 0.97003 * 120.00336 * 359.97438 * 18 17 16 31 31 H 0.97004 * 120.00486 * 180.02562 * 18 17 16 32 32 H 1.08002 * 120.78201 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4826 7 7 0.9429 0.8297 -2.6034 8 14 2.3224 -1.1197 -4.0078 9 1 3.1482 -2.2860 -3.6037 10 1 1.1677 -1.5868 -4.8164 11 1 3.1473 -0.1860 -4.8160 12 7 2.0196 -0.6924 1.1995 13 6 1.5282 -2.0761 1.2461 14 6 1.6676 0.0018 2.3557 15 7 0.6597 -0.4296 3.0966 16 6 0.2919 0.1956 4.1992 17 6 0.9560 1.3366 4.6231 18 7 0.5596 1.9935 5.7945 19 6 2.0230 1.8217 3.8689 20 6 2.3837 1.1376 2.7211 21 17 3.7091 1.6924 1.7468 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.7084 1.1608 -3.4844 26 1 1.7925 -2.5869 0.3202 27 1 1.9829 -2.5950 2.0898 28 1 0.4444 -2.0730 1.3627 29 1 -0.5356 -0.1865 4.7786 30 1 -0.1840 1.6510 6.3147 31 1 1.0281 2.7915 6.0854 32 1 2.5582 2.7085 4.1750 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235423913.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:18 Heat of formation + Delta-G solvation = 47.091687 kcal Electronic energy + Delta-G solvation = -17097.554097 eV Core-core repulsion = 14312.454334 eV Total energy + Delta-G solvation = -2785.099764 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.13493 -37.09471 -35.95491 -34.39295 -32.52016 -31.38073 -29.08003 -27.74015 -25.22576 -25.11970 -22.98917 -22.06397 -19.74664 -17.39887 -17.00916 -16.25077 -15.95334 -15.05846 -14.99653 -14.24692 -14.12147 -13.43532 -13.23834 -12.86075 -12.38243 -12.05960 -11.64810 -11.34630 -11.25376 -10.91423 -10.84200 -10.66297 -10.58700 -10.35687 -9.99146 -9.93013 -9.30618 -8.85996 -8.78958 -8.37525 -8.03146 -6.85512 -5.99102 -4.02861 1.40989 1.70560 2.65858 3.32774 3.40490 3.45169 3.85353 4.08841 4.42619 4.65480 4.99756 5.06183 5.33614 5.43345 5.57666 5.98995 6.11052 6.29657 6.54978 6.59613 6.76160 6.93925 6.97650 7.13743 7.34099 7.58124 7.65266 7.70343 7.84797 8.03448 8.26324 8.50692 8.60473 9.01147 9.61077 11.08181 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.031584 B = 0.006840 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.317213 B = 4092.479830 C = 4428.137191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.216 3.784 3 H 0.052 0.948 4 C -0.499 4.499 5 H 0.066 0.934 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.285 1.285 12 N -0.472 5.472 13 C 0.042 3.958 14 C 0.289 3.711 15 N -0.467 5.467 16 C 0.048 3.952 17 C 0.137 3.863 18 N -0.877 5.877 19 C -0.137 4.137 20 C -0.042 4.042 21 Cl -0.040 7.040 22 H 0.033 0.967 23 H 0.007 0.993 24 H 0.088 0.912 25 H 0.260 0.740 26 H 0.077 0.923 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.149 0.851 30 H 0.398 0.602 31 H 0.396 0.604 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.138 2.276 14.180 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.112 3.888 3 H 0.070 0.930 4 C -0.538 4.538 5 H 0.084 0.916 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.191 5.191 13 C -0.106 4.106 14 C 0.055 3.945 15 N -0.180 5.180 16 C -0.115 4.115 17 C 0.031 3.969 18 N -0.420 5.420 19 C -0.168 4.168 20 C -0.075 4.075 21 Cl -0.011 7.011 22 H 0.052 0.948 23 H 0.026 0.974 24 H 0.107 0.893 25 H 0.070 0.930 26 H 0.096 0.904 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.166 0.834 30 H 0.226 0.774 31 H 0.224 0.776 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.011 1.609 13.523 13.618 hybrid contribution -0.134 0.672 -0.230 0.723 sum -0.123 2.280 13.292 13.487 Atomic orbital electron populations 1.22367 0.99833 0.99755 1.00460 1.19512 0.90198 0.95161 0.83939 0.92998 1.21086 1.30793 1.12577 0.89335 0.91614 1.24893 0.95180 0.95104 0.98943 1.69905 1.36925 1.23007 1.23340 0.86447 0.78517 0.79665 0.82821 1.19657 1.21171 1.21081 1.60157 1.55416 1.03192 1.00337 1.22108 0.98852 0.88417 1.01189 1.19866 0.89034 0.91147 0.94415 1.67859 1.11992 1.32315 1.05850 1.22075 1.01012 0.93197 0.95253 1.18534 0.95161 0.94038 0.89124 1.42201 1.40349 1.33116 1.26284 1.20733 0.98943 1.01870 0.95241 1.21281 0.94421 0.97268 0.94495 1.98371 1.44506 1.88427 1.69811 0.94762 0.97405 0.89293 0.93017 0.90428 0.93865 0.94057 0.83413 0.77411 0.77618 0.84591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 8.32 37.16 0.31 -3.87 16 2 C 0.22 5.52 2.08 -68.86 -0.14 5.37 16 3 H 0.05 1.44 6.64 -51.93 -0.34 1.10 16 4 C -0.50 -13.64 7.86 -34.44 -0.27 -13.91 16 5 H 0.07 1.79 6.78 -52.49 -0.36 1.44 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -25.47 11.32 55.43 0.63 -24.84 16 8 Si 0.90 21.37 29.54 -169.99 -5.02 16.34 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 N -0.47 -10.76 4.25 -174.66 -0.74 -11.50 16 13 C 0.04 0.89 8.20 60.07 0.49 1.38 16 14 C 0.29 5.98 4.87 -154.71 -0.75 5.23 16 15 N -0.47 -8.90 8.45 -12.20 -0.10 -9.00 16 16 C 0.05 0.73 11.05 -17.33 -0.19 0.54 16 17 C 0.14 1.85 6.79 -83.53 -0.57 1.28 16 18 N -0.88 -7.84 9.11 32.52 0.30 -7.54 16 19 C -0.14 -2.06 9.84 -39.10 -0.38 -2.45 16 20 C -0.04 -0.79 6.18 -39.18 -0.24 -1.04 16 21 Cl -0.04 -0.76 27.01 -51.86 -1.40 -2.16 16 22 H 0.03 0.84 6.51 -51.93 -0.34 0.50 16 23 H 0.01 0.17 7.11 -51.93 -0.37 -0.20 16 24 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 25 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.08 1.68 6.37 -51.93 -0.33 1.35 16 27 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.88 6.03 -51.93 -0.31 0.57 16 29 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.40 2.69 8.86 -40.82 -0.36 2.33 16 31 H 0.40 2.81 8.86 -40.82 -0.36 2.44 16 32 H 0.14 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 277.27 15.07 4.18 4.18 Total: -1.00 -30.21 277.27 -7.50 -37.72 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -3.49 Total: 2.70 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -1.85 Total: -5.89 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.08 Total: -52.88 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.40 Total: -2.16 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.21 -7.50 -37.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235423913.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.809 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds