Wall clock time and date at job start Mon Mar 30 2020 07:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47031 * 2 1 4 4 C 1.50701 * 109.46846 * 239.99555 * 2 1 3 5 5 H 1.08002 * 119.99736 * 239.99686 * 4 2 1 6 6 C 1.37871 * 119.99670 * 60.00867 * 4 2 1 7 7 N 1.31513 * 120.00404 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99818 * 179.97438 * 6 4 2 9 9 H 1.48512 * 109.47214 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47571 * 119.99432 * 8 6 4 11 11 H 1.48505 * 109.47362 * 239.99959 * 8 6 4 12 12 N 1.46900 * 109.46799 * 119.99688 * 2 1 3 13 13 C 1.46901 * 111.00137 * 58.95461 * 12 2 1 14 14 C 1.39379 * 111.00146 * 294.99952 * 12 2 1 15 15 N 1.32321 * 119.63332 * 102.80212 * 14 12 2 16 16 C 1.31976 * 121.71064 * 179.97438 * 15 14 12 17 17 C 1.38663 * 120.77731 * 359.97438 * 16 15 14 18 18 N 1.40030 * 120.40772 * 180.02562 * 17 16 15 19 19 C 1.39373 * 119.18781 * 0.02562 * 17 16 15 20 20 C 1.38402 * 118.43499 * 359.75094 * 19 17 16 21 21 Cl 1.73609 * 120.42222 * 180.26058 * 20 19 17 22 22 H 1.08994 * 109.47668 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47143 * 300.00523 * 1 2 3 24 24 H 1.09005 * 109.46858 * 59.99970 * 1 2 3 25 25 H 0.97001 * 119.99699 * 180.02562 * 7 6 4 26 26 H 1.09001 * 109.47252 * 54.47842 * 13 12 2 27 27 H 1.08994 * 109.47882 * 174.48006 * 13 12 2 28 28 H 1.09002 * 109.47203 * 294.48477 * 13 12 2 29 29 H 1.08002 * 119.61098 * 180.02562 * 16 15 14 30 30 H 0.97003 * 120.00336 * 359.97438 * 18 17 16 31 31 H 0.97004 * 120.00486 * 180.02562 * 18 17 16 32 32 H 1.08002 * 120.78201 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4826 7 7 0.9429 0.8297 -2.6034 8 14 2.3224 -1.1197 -4.0078 9 1 3.1482 -2.2860 -3.6037 10 1 1.1677 -1.5868 -4.8164 11 1 3.1473 -0.1860 -4.8160 12 7 2.0196 -0.6924 1.1995 13 6 1.5282 -2.0761 1.2461 14 6 1.6676 0.0018 2.3557 15 7 0.6597 -0.4296 3.0966 16 6 0.2919 0.1956 4.1992 17 6 0.9560 1.3366 4.6231 18 7 0.5596 1.9935 5.7945 19 6 2.0230 1.8217 3.8689 20 6 2.3837 1.1376 2.7211 21 17 3.7091 1.6924 1.7468 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.7084 1.1608 -3.4844 26 1 1.7925 -2.5869 0.3202 27 1 1.9829 -2.5950 2.0898 28 1 0.4444 -2.0730 1.3627 29 1 -0.5356 -0.1865 4.7786 30 1 -0.1840 1.6510 6.3147 31 1 1.0281 2.7915 6.0854 32 1 2.5582 2.7085 4.1750 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235423913.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:17 Heat of formation + Delta-G solvation = 26.232633 kcal Electronic energy + Delta-G solvation = -17098.458614 eV Core-core repulsion = 14312.454334 eV Total energy + Delta-G solvation = -2786.004280 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.48826 -38.64588 -37.36996 -35.72397 -34.39171 -32.64712 -30.89545 -29.16232 -27.24294 -26.72790 -24.29453 -23.57650 -21.48380 -18.57333 -18.28510 -18.09790 -17.51985 -16.80129 -16.14684 -15.84658 -15.57803 -14.95531 -14.65115 -14.58286 -13.91182 -13.69149 -13.20951 -13.09003 -13.00560 -12.72436 -12.63792 -12.43794 -12.19163 -12.01376 -11.86744 -11.70947 -10.97947 -10.50454 -10.47646 -10.16153 -9.50913 -8.19380 -8.06499 -6.18447 0.13684 0.41465 1.28930 1.44298 1.46132 1.58118 2.44740 2.76337 2.93119 3.19121 3.23320 3.77759 3.90381 4.17589 4.28192 4.60553 4.75396 4.81233 4.85817 4.91272 4.97466 5.13827 5.21799 5.34212 5.58815 5.70122 5.79995 6.16732 6.31220 6.44325 6.79364 6.90470 7.01054 7.14834 7.49342 8.98752 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.031584 B = 0.006840 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.317213 B = 4092.479830 C = 4428.137191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.225 3.775 3 H 0.026 0.974 4 C -0.512 4.512 5 H 0.060 0.940 6 C 0.014 3.986 7 N -0.920 5.920 8 Si 0.960 3.040 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.282 1.282 12 N -0.482 5.482 13 C 0.053 3.947 14 C 0.244 3.756 15 N -0.484 5.484 16 C 0.040 3.960 17 C 0.165 3.835 18 N -0.851 5.851 19 C -0.142 4.142 20 C -0.055 4.055 21 Cl -0.055 7.055 22 H 0.031 0.969 23 H 0.011 0.989 24 H 0.063 0.937 25 H 0.261 0.739 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.034 0.966 29 H 0.183 0.817 30 H 0.414 0.586 31 H 0.410 0.590 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.515 2.541 16.200 16.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.120 3.880 3 H 0.044 0.956 4 C -0.550 4.550 5 H 0.078 0.922 6 C -0.185 4.185 7 N -0.560 5.560 8 Si 0.786 3.214 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.208 1.208 12 N -0.202 5.202 13 C -0.095 4.095 14 C 0.013 3.987 15 N -0.196 5.196 16 C -0.125 4.125 17 C 0.056 3.944 18 N -0.394 5.394 19 C -0.173 4.173 20 C -0.087 4.087 21 Cl -0.027 7.027 22 H 0.050 0.950 23 H 0.030 0.970 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.200 0.800 30 H 0.245 0.755 31 H 0.241 0.759 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.373 1.893 15.610 15.728 hybrid contribution -0.115 0.682 -0.585 0.906 sum -0.488 2.575 15.025 15.252 Atomic orbital electron populations 1.22126 1.00075 0.99068 0.99213 1.19177 0.89791 0.93901 0.85178 0.95645 1.21332 1.30677 1.12491 0.90505 0.92185 1.25645 0.95350 0.95762 1.01702 1.70027 1.37871 1.24201 1.23949 0.85477 0.78045 0.78658 0.79265 1.19097 1.20665 1.20823 1.60020 1.56291 1.03483 1.00367 1.21989 0.98377 0.88107 1.01039 1.19766 0.91287 0.92984 0.94699 1.67745 1.11792 1.33117 1.06989 1.22668 1.01787 0.93532 0.94529 1.18544 0.93413 0.92967 0.89462 1.42200 1.40195 1.32749 1.24265 1.21004 0.99590 1.02510 0.94237 1.21462 0.94272 0.97413 0.95563 1.98356 1.45241 1.88484 1.70586 0.95009 0.97001 0.91856 0.92966 0.91771 0.92290 0.94786 0.80024 0.75537 0.75917 0.81863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.55 8.32 71.98 0.60 -6.95 16 2 C 0.22 11.81 2.08 44.17 0.09 11.91 16 3 H 0.03 1.47 6.64 -2.39 -0.02 1.46 16 4 C -0.51 -28.58 7.86 25.60 0.20 -28.38 16 5 H 0.06 3.35 6.78 -2.91 -0.02 3.33 16 6 C 0.01 0.78 5.30 84.65 0.45 1.22 16 7 N -0.92 -53.62 11.32 21.44 0.24 -53.37 16 8 Si 0.96 44.31 29.54 68.60 2.03 46.34 16 9 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 N -0.48 -22.38 4.25 -706.49 -3.00 -25.38 16 13 C 0.05 2.25 8.20 127.69 1.05 3.30 16 14 C 0.24 10.09 4.87 132.96 0.65 10.74 16 15 N -0.48 -17.86 8.45 -192.50 -1.63 -19.49 16 16 C 0.04 1.09 11.05 84.77 0.94 2.02 16 17 C 0.16 3.86 6.79 38.21 0.26 4.12 16 18 N -0.85 -11.07 9.11 -51.01 -0.46 -11.54 16 19 C -0.14 -3.94 9.84 22.58 0.22 -3.72 16 20 C -0.06 -2.04 6.18 22.53 0.14 -1.90 16 21 Cl -0.06 -2.13 27.01 -2.72 -0.07 -2.21 16 22 H 0.03 1.60 6.51 -2.39 -0.02 1.58 16 23 H 0.01 0.55 7.11 -2.38 -0.02 0.54 16 24 H 0.06 3.59 6.07 -2.38 -0.01 3.57 16 25 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 26 H 0.06 2.84 6.37 -2.39 -0.02 2.83 16 27 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.03 1.46 6.03 -2.39 -0.01 1.45 16 29 H 0.18 3.60 8.06 -2.91 -0.02 3.58 16 30 H 0.41 3.43 8.86 -92.71 -0.82 2.61 16 31 H 0.41 3.73 8.86 -92.71 -0.82 2.91 16 32 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -66.63 277.27 1.22 -65.41 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -0.47 Total: 7.88 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: 4.59 Total: -7.64 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -4.85 Total: -109.78 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 17 Polarization: -2.13 SS G_CDS: -0.07 Total: -2.21 kcal Total: -66.63 1.22 -65.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235423913.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.643 kcal (2) G-P(sol) polarization free energy of solvation -66.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds