Wall clock time and date at job start Mon Mar 30 2020 06:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35904 * 116.99918 * 2 1 4 4 C 1.38758 * 120.05147 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94152 * 179.72983 * 4 3 2 6 6 C 1.38294 * 120.05421 * 0.52051 * 5 4 3 7 7 C 1.50703 * 119.94520 * 179.72733 * 6 5 4 8 8 H 1.09000 * 109.47088 * 159.72323 * 7 6 5 9 9 N 1.46904 * 109.46983 * 39.72796 * 7 6 5 10 10 C 1.50701 * 109.47151 * 279.73184 * 7 6 5 11 11 H 1.08002 * 119.99761 * 359.97438 * 10 7 6 12 12 C 1.37871 * 119.99694 * 180.27762 * 10 7 6 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 7 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 7 15 15 H 1.48504 * 109.47209 * 89.99886 * 14 12 10 16 16 H 1.48501 * 109.47358 * 209.99377 * 14 12 10 17 17 H 1.48496 * 109.47341 * 329.99989 * 14 12 10 18 18 C 1.38244 * 120.11219 * 359.45861 * 6 5 4 19 19 C 1.38166 * 120.05446 * 0.29041 * 18 6 5 20 20 C 1.50703 * 120.02792 * 179.97438 * 19 18 6 21 21 Cl 1.80296 * 109.47214 * 90.00084 * 20 19 18 22 22 H 1.09008 * 109.46573 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47081 * 299.99576 * 1 2 3 24 24 H 1.09001 * 109.46988 * 60.00393 * 1 2 3 25 25 H 1.08002 * 120.02879 * 359.97438 * 4 3 2 26 26 H 1.08001 * 119.97628 * 180.26916 * 5 4 3 27 27 H 1.00894 * 111.00177 * 176.04439 * 9 7 6 28 28 H 1.00906 * 110.99862 * 300.00217 * 9 7 6 29 29 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 30 30 H 1.07997 * 119.97129 * 180.27575 * 18 6 5 31 31 H 1.09000 * 109.46956 * 210.00121 * 20 19 18 32 32 H 1.09005 * 109.46803 * 329.99851 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9206 3.6048 0.0062 6 6 3.3017 3.6759 0.0004 7 6 3.9859 5.0187 0.0004 8 1 5.0113 4.9040 0.3519 9 7 3.2629 5.9366 0.8907 10 6 3.9939 5.5783 -1.3988 11 1 3.5486 5.0175 -2.2073 12 6 4.5754 6.8034 -1.6479 13 7 5.1180 7.4861 -0.6635 14 14 4.5923 7.4935 -3.3837 15 1 3.3699 8.3073 -3.6048 16 1 5.7942 8.3465 -3.5656 17 1 4.6261 6.3757 -4.3606 18 6 4.0559 2.5172 0.0003 19 6 3.4311 1.2849 -0.0001 20 6 4.2537 0.0223 -0.0008 21 17 4.5821 -0.4821 1.6987 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.2126 2.3203 0.0005 26 1 1.3338 4.5114 0.0110 27 1 3.7381 6.8241 0.9583 28 1 2.3088 6.0595 0.5859 29 1 5.5274 8.3478 -0.8388 30 1 5.1343 2.5754 0.0003 31 1 3.7063 -0.7677 -0.5149 32 1 5.1977 0.2040 -0.5148 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238348160.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:38 Heat of formation + Delta-G solvation = -52.370449 kcal Electronic energy + Delta-G solvation = -16561.865498 eV Core-core repulsion = 13740.159982 eV Total energy + Delta-G solvation = -2821.705517 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = -0.09 seconds Orbital eigenvalues (eV) -41.15863 -38.78005 -36.95755 -36.15923 -33.71932 -32.80509 -30.71904 -28.43615 -27.78533 -27.19444 -24.37292 -22.88634 -21.05787 -18.89631 -18.55041 -17.48431 -16.90887 -16.63816 -16.11610 -15.63639 -15.20828 -15.12786 -14.80201 -14.63377 -14.23934 -13.94701 -13.47537 -13.31648 -12.96323 -12.85061 -12.70074 -12.57911 -12.07705 -11.99441 -11.63987 -11.52062 -11.25495 -11.18891 -10.70284 -9.76780 -9.23974 -8.85453 -8.09308 -6.37135 0.24940 0.60937 1.37036 1.39760 1.49248 1.64042 2.36776 2.42781 2.97827 3.07081 3.65824 3.85256 4.07632 4.26410 4.37735 4.46600 4.48294 4.54376 4.63516 4.73669 4.78367 4.87492 4.98792 5.36904 5.39907 5.53878 5.66017 5.83475 6.00473 6.14006 6.51063 6.65546 6.93708 7.12633 7.39579 8.83157 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.025080 B = 0.005772 C = 0.005310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.166919 B = 4849.991001 C = 5271.540368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.325 6.325 3 C 0.124 3.876 4 C -0.206 4.206 5 C -0.070 4.070 6 C -0.088 4.088 7 C 0.247 3.753 8 H 0.010 0.990 9 N -0.843 5.843 10 C -0.556 4.556 11 H 0.048 0.952 12 C 0.022 3.978 13 N -0.916 5.916 14 Si 0.957 3.043 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.273 1.273 18 C -0.078 4.078 19 C -0.146 4.146 20 C 0.033 3.967 21 Cl -0.199 7.199 22 H 0.122 0.878 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.152 0.848 26 H 0.122 0.878 27 H 0.345 0.655 28 H 0.318 0.682 29 H 0.267 0.733 30 H 0.122 0.878 31 H 0.115 0.885 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.765 -13.637 -0.209 15.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.239 6.239 3 C 0.079 3.921 4 C -0.224 4.224 5 C -0.089 4.089 6 C -0.089 4.089 7 C 0.137 3.863 8 H 0.028 0.972 9 N -0.372 5.372 10 C -0.596 4.596 11 H 0.066 0.934 12 C -0.178 4.178 13 N -0.556 5.556 14 Si 0.783 3.217 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.198 1.198 18 C -0.097 4.097 19 C -0.147 4.147 20 C -0.029 4.029 21 Cl -0.173 7.173 22 H 0.140 0.860 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.170 0.830 26 H 0.140 0.860 27 H 0.159 0.841 28 H 0.128 0.872 29 H 0.077 0.923 30 H 0.140 0.860 31 H 0.133 0.867 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.405 -14.260 0.545 16.077 hybrid contribution 0.049 1.612 -1.574 2.253 sum -7.357 -12.648 -1.029 14.668 Atomic orbital electron populations 1.23322 0.76701 1.05479 1.02044 1.86003 1.23181 1.25943 1.88758 1.18699 0.91398 0.84792 0.97237 1.21370 1.00904 0.91389 1.08733 1.20852 0.93906 0.97501 0.96625 1.20176 0.94414 0.95494 0.98799 1.17739 0.91692 0.86900 0.89950 0.97243 1.59500 1.05513 1.18574 1.53589 1.22050 1.38152 1.03888 0.95516 0.93413 1.25735 0.94026 0.97222 1.00801 1.69845 1.38507 1.14340 1.32898 0.85570 0.77690 0.78156 0.80268 1.19937 1.20809 1.19802 1.20787 0.99796 0.90848 0.98261 1.19064 0.91147 0.94676 1.09846 1.22997 1.01707 0.95466 0.82706 1.98709 1.96437 1.92512 1.29608 0.85988 0.92163 0.91940 0.83013 0.85984 0.84104 0.87164 0.92338 0.86040 0.86670 0.86979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.32 -8.35 9.54 -92.47 -0.88 -9.23 16 3 C 0.12 3.83 6.66 22.51 0.15 3.98 16 4 C -0.21 -6.36 9.04 22.37 0.20 -6.16 16 5 C -0.07 -2.64 9.29 22.26 0.21 -2.43 16 6 C -0.09 -3.78 4.90 -19.85 -0.10 -3.88 16 7 C 0.25 12.44 2.95 43.42 0.13 12.57 16 8 H 0.01 0.54 8.00 -2.39 -0.02 0.52 16 9 N -0.84 -40.51 9.01 -174.94 -1.58 -42.08 16 10 C -0.56 -29.76 8.70 25.60 0.22 -29.54 16 11 H 0.05 2.58 7.74 -2.91 -0.02 2.55 16 12 C 0.02 1.19 5.38 84.65 0.46 1.65 16 13 N -0.92 -50.54 11.55 21.45 0.25 -50.30 16 14 Si 0.96 42.39 29.54 68.60 2.03 44.41 16 15 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 16 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 18 C -0.08 -3.01 9.32 22.25 0.21 -2.80 16 19 C -0.15 -4.76 5.27 -19.77 -0.10 -4.87 16 20 C 0.03 0.87 6.56 71.24 0.47 1.34 16 21 Cl -0.20 -5.65 29.13 -2.72 -0.08 -5.73 16 22 H 0.12 1.39 8.14 -2.38 -0.02 1.37 16 23 H 0.06 0.96 7.66 -2.39 -0.02 0.94 16 24 H 0.06 0.95 7.66 -2.39 -0.02 0.93 16 25 H 0.15 3.62 6.30 -2.91 -0.02 3.61 16 26 H 0.12 4.46 6.65 -2.91 -0.02 4.44 16 27 H 0.34 17.82 7.09 -89.70 -0.64 17.19 16 28 H 0.32 14.23 7.33 -89.69 -0.66 13.57 16 29 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 30 H 0.12 4.61 8.03 -2.91 -0.02 4.59 16 31 H 0.11 2.64 7.53 -2.39 -0.02 2.62 16 32 H 0.11 2.59 8.09 -2.38 -0.02 2.57 16 Total: -1.00 -59.97 286.49 2.55 -57.43 By element: Atomic # 1 Polarization: 34.35 SS G_CDS: -0.14 Total: 34.21 kcal Atomic # 6 Polarization: -31.66 SS G_CDS: 2.95 Total: -28.71 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -1.33 Total: -92.38 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.88 Total: -9.23 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 17 Polarization: -5.65 SS G_CDS: -0.08 Total: -5.73 kcal Total: -59.97 2.55 -57.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238348160.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.057 kcal (2) G-P(sol) polarization free energy of solvation -59.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.09 seconds