Wall clock time and date at job start Mon Mar 30 2020 06:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35924 * 117.00177 * 2 1 4 4 C 1.38710 * 120.05859 * 0.02562 * 3 2 1 5 5 C 1.38151 * 119.95522 * 179.97438 * 4 3 2 6 6 C 1.38278 * 120.07971 * 359.97438 * 5 4 3 7 7 C 1.38245 * 120.11889 * 0.27895 * 6 5 4 8 8 C 1.50696 * 119.97816 * 179.72060 * 7 6 5 9 9 C 1.53002 * 109.46760 * 120.00269 * 8 7 6 10 10 N 1.46894 * 109.47341 * 0.02562 * 8 7 6 11 11 C 1.50702 * 109.47277 * 239.99702 * 8 7 6 12 12 H 1.08004 * 119.99796 * 0.02562 * 11 8 7 13 13 C 1.37879 * 120.00270 * 179.97438 * 11 8 7 14 14 N 1.31510 * 119.99642 * 0.02562 * 13 11 8 15 15 Si 1.86797 * 120.00173 * 180.02562 * 13 11 8 16 16 H 1.48506 * 109.47103 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47192 * 120.00127 * 15 13 11 18 18 H 1.48500 * 109.47125 * 240.00317 * 15 13 11 19 19 C 1.38262 * 120.03737 * 359.45054 * 7 6 5 20 20 Cl 1.73604 * 120.03285 * 180.27437 * 19 7 6 21 21 H 1.09001 * 109.47029 * 59.99545 * 1 2 3 22 22 H 1.08997 * 109.47216 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46472 * 299.99788 * 1 2 3 24 24 H 1.08003 * 120.02281 * 359.97438 * 4 3 2 25 25 H 1.08000 * 119.95866 * 179.97438 * 5 4 3 26 26 H 1.08002 * 119.93852 * 179.97438 * 6 5 4 27 27 H 1.08998 * 109.47176 * 60.00020 * 9 8 7 28 28 H 1.09001 * 109.46954 * 179.97438 * 9 8 7 29 29 H 1.08994 * 109.47159 * 299.99427 * 9 8 7 30 30 H 1.00896 * 110.99789 * 299.99755 * 10 8 7 31 31 H 1.00897 * 111.00094 * 63.94974 * 10 8 7 32 32 H 0.97006 * 120.00115 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2919 2.3752 0.0005 5 6 1.9214 3.6050 0.0011 6 6 3.3023 3.6767 0.0016 7 6 4.0571 2.5186 -0.0042 8 6 5.5618 2.6005 -0.0100 9 6 6.1151 1.9049 1.2354 10 7 5.9755 4.0099 -0.0076 11 6 6.0972 1.9214 -1.2442 12 1 5.4159 1.4754 -1.9537 13 6 7.4567 1.8702 -1.4682 14 7 8.2862 2.4137 -0.6045 15 14 8.1202 1.0291 -2.9984 16 1 6.9891 0.5027 -3.8038 17 1 8.8897 2.0083 -3.8073 18 1 9.0094 -0.0919 -2.6009 19 6 3.4323 1.2852 0.0009 20 17 4.3803 -0.1691 0.0008 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5138 0.8900 24 1 0.2133 2.3202 0.0005 25 1 1.3342 4.5114 0.0011 26 1 3.7920 4.6393 0.0016 27 1 5.8082 0.8590 1.2340 28 1 7.2036 1.9637 1.2310 29 1 5.7280 2.3960 2.1281 30 1 5.6222 4.4918 -0.8205 31 1 5.6838 4.4710 0.8412 32 1 9.2428 2.3774 -0.7618 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238395309.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:29 Heat of formation + Delta-G solvation = -22.982562 kcal Electronic energy + Delta-G solvation = -17283.979062 eV Core-core repulsion = 14463.547900 eV Total energy + Delta-G solvation = -2820.431162 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.15880 -39.15677 -37.01381 -36.55270 -33.57824 -31.61031 -30.27405 -29.40034 -27.90826 -27.10336 -23.82434 -23.17500 -21.07178 -18.82139 -18.22697 -17.18613 -16.98677 -16.65539 -16.59678 -15.85633 -15.41154 -15.09227 -14.74515 -14.22130 -14.15209 -13.45278 -13.17985 -12.96782 -12.74509 -12.66051 -12.60865 -12.29456 -12.17320 -11.98702 -11.85164 -11.44077 -11.09241 -10.69353 -10.34276 -9.41069 -9.05986 -8.88687 -7.82151 -5.99567 0.35561 0.47328 1.41052 1.45531 1.54092 1.58163 2.36726 2.51914 2.80731 3.37075 3.92947 4.02333 4.26173 4.34173 4.42922 4.43212 4.48574 4.68164 4.74491 4.87388 5.07042 5.19667 5.26977 5.40321 5.50889 5.61135 5.79047 5.85551 6.09717 6.42596 6.45059 6.78366 7.19393 7.35430 7.67395 9.16191 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.025773 B = 0.008587 C = 0.007422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.167086 B = 3260.146188 C = 3771.510402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.121 3.879 4 C -0.213 4.213 5 C -0.068 4.068 6 C -0.175 4.175 7 C -0.053 4.053 8 C 0.278 3.722 9 C -0.132 4.132 10 N -0.814 5.814 11 C -0.504 4.504 12 H 0.038 0.962 13 C 0.046 3.954 14 N -0.870 5.870 15 Si 0.924 3.076 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.286 1.286 19 C -0.086 4.086 20 Cl -0.064 7.064 21 H 0.067 0.933 22 H 0.117 0.883 23 H 0.070 0.930 24 H 0.165 0.835 25 H 0.163 0.837 26 H 0.136 0.864 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.011 0.989 30 H 0.325 0.675 31 H 0.313 0.687 32 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.192 0.311 2.239 16.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.075 3.925 4 C -0.232 4.232 5 C -0.086 4.086 6 C -0.193 4.193 7 C -0.056 4.056 8 C 0.186 3.814 9 C -0.190 4.190 10 N -0.342 5.342 11 C -0.543 4.543 12 H 0.056 0.944 13 C -0.157 4.157 14 N -0.506 5.506 15 Si 0.752 3.248 16 H -0.202 1.202 17 H -0.209 1.209 18 H -0.213 1.213 19 C -0.114 4.114 20 Cl -0.035 7.035 21 H 0.085 0.915 22 H 0.135 0.865 23 H 0.088 0.912 24 H 0.183 0.817 25 H 0.181 0.819 26 H 0.153 0.847 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.030 0.970 30 H 0.138 0.862 31 H 0.125 0.875 32 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -15.070 -0.262 2.250 15.239 hybrid contribution -0.295 -0.401 -0.812 0.953 sum -15.365 -0.663 1.438 15.446 Atomic orbital electron populations 1.23387 0.76155 1.05587 1.02517 1.86128 1.23730 1.26138 1.88540 1.18917 0.90037 0.86201 0.97373 1.21400 1.01108 0.90823 1.09863 1.21323 0.93705 0.98325 0.95230 1.21167 0.94650 0.97644 1.05882 1.21390 1.00298 0.91195 0.92740 1.17345 0.82345 0.87132 0.94600 1.21916 1.02988 0.99624 0.94447 1.58920 1.67938 1.02840 1.04518 1.20838 0.91222 1.36065 1.06193 0.94378 1.25334 0.97426 0.95305 0.97607 1.70146 1.01774 1.43492 1.35222 0.86053 0.78292 0.78574 0.81896 1.20167 1.20904 1.21268 1.20231 0.88951 0.88864 1.13345 1.98296 1.72259 1.36215 1.96753 0.91460 0.86458 0.91177 0.81717 0.81945 0.84678 0.92935 0.91739 0.96957 0.86236 0.87500 0.94064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.33 -10.21 9.96 -92.69 -0.92 -11.13 16 3 C 0.12 4.12 6.68 22.52 0.15 4.27 16 4 C -0.21 -5.66 9.04 22.36 0.20 -5.46 16 5 C -0.07 -1.80 10.04 22.26 0.22 -1.57 16 6 C -0.17 -5.90 9.04 22.28 0.20 -5.69 16 7 C -0.05 -2.22 4.73 -19.86 -0.09 -2.31 16 8 C 0.28 13.31 0.55 2.04 0.00 13.31 16 9 C -0.13 -6.53 8.26 71.98 0.59 -5.94 16 10 N -0.81 -36.68 7.48 -157.52 -1.18 -37.86 16 11 C -0.50 -27.21 6.46 25.60 0.17 -27.05 16 12 H 0.04 2.15 7.30 -2.91 -0.02 2.13 16 13 C 0.05 2.55 5.23 84.66 0.44 2.99 16 14 N -0.87 -49.66 10.80 21.45 0.23 -49.43 16 15 Si 0.92 44.78 29.54 68.60 2.03 46.80 16 16 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 17 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 18 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 19 C -0.09 -3.57 5.95 22.41 0.13 -3.44 16 20 Cl -0.06 -2.83 23.13 -2.72 -0.06 -2.90 16 21 H 0.07 1.02 7.66 -2.39 -0.02 1.00 16 22 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.07 1.02 7.66 -2.39 -0.02 1.00 16 24 H 0.17 2.98 6.30 -2.91 -0.02 2.97 16 25 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 26 H 0.14 4.15 6.18 -2.91 -0.02 4.13 16 27 H 0.05 2.57 4.91 -2.39 -0.01 2.56 16 28 H 0.06 3.57 6.07 -2.39 -0.01 3.56 16 29 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.32 13.91 8.04 -89.70 -0.72 13.19 16 31 H 0.31 12.49 8.26 -89.70 -0.74 11.75 16 32 H 0.25 13.85 8.31 -92.70 -0.77 13.08 16 Total: -1.00 -65.11 273.04 2.93 -62.18 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -0.29 Total: 21.80 kcal Atomic # 6 Polarization: -32.59 SS G_CDS: 3.13 Total: -29.46 kcal Atomic # 7 Polarization: -86.34 SS G_CDS: -0.95 Total: -87.29 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -0.92 Total: -11.13 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 17 Polarization: -2.83 SS G_CDS: -0.06 Total: -2.90 kcal Total: -65.11 2.93 -62.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238395309.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.194 kcal (2) G-P(sol) polarization free energy of solvation -65.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds