Wall clock time and date at job start Mon Mar 30 2020 06:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38165 * 120.02180 * 2 1 4 4 C 1.38342 * 120.04348 * 179.97438 * 3 2 1 5 5 Cl 1.73598 * 119.95843 * 180.02562 * 4 3 2 6 6 C 1.38393 * 120.08256 * 359.80065 * 4 3 2 7 7 C 1.50702 * 119.97820 * 180.24677 * 6 4 3 8 8 C 1.38120 * 120.04091 * 0.45440 * 6 4 3 9 9 C 1.50704 * 120.01595 * 179.79253 * 8 6 4 10 10 H 1.08994 * 109.47393 * 12.57534 * 9 8 6 11 11 N 1.46898 * 109.46765 * 132.57888 * 9 8 6 12 12 C 1.50709 * 109.47075 * 252.57326 * 9 8 6 13 13 H 1.07994 * 119.99872 * 354.34162 * 12 9 8 14 14 C 1.37876 * 119.99663 * 174.34561 * 12 9 8 15 15 N 1.31518 * 119.99777 * 159.94909 * 14 12 9 16 16 Si 1.86794 * 120.00096 * 339.67048 * 14 12 9 17 17 H 1.48501 * 109.47125 * 180.27862 * 16 14 12 18 18 H 1.48503 * 109.47376 * 300.27748 * 16 14 12 19 19 H 1.48501 * 109.47487 * 60.27961 * 16 14 12 20 20 C 1.38704 * 120.02048 * 179.97438 * 2 1 3 21 21 O 1.35920 * 120.04167 * 0.04490 * 20 2 1 22 22 H 1.09005 * 109.47157 * 270.02222 * 1 2 3 23 23 H 1.09000 * 109.47038 * 30.01778 * 1 2 3 24 24 H 1.08999 * 109.47291 * 150.02281 * 1 2 3 25 25 H 1.08005 * 119.97888 * 359.97438 * 3 2 1 26 26 H 1.08996 * 109.47474 * 263.29084 * 7 6 4 27 27 H 1.08997 * 109.46842 * 23.28853 * 7 6 4 28 28 H 1.09002 * 109.46901 * 143.28335 * 7 6 4 29 29 H 1.00902 * 111.00400 * 69.75450 * 11 9 8 30 30 H 1.00902 * 110.99825 * 193.71305 * 11 9 8 31 31 H 0.96998 * 119.99979 * 354.39460 * 15 14 12 32 32 H 0.96708 * 113.99968 * 269.97713 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5817 1.1968 0.0005 5 17 4.4480 2.7012 0.0012 6 6 4.2759 -0.0004 0.0052 7 6 5.7829 0.0029 0.0114 8 6 3.5883 -1.1983 -0.0001 9 6 4.3448 -2.5018 0.0003 10 1 5.3937 -2.3131 0.2288 11 7 3.7759 -3.3977 1.0160 12 6 4.2345 -3.1470 -1.3572 13 1 3.5992 -2.7095 -2.1130 14 6 4.9447 -4.2959 -1.6340 15 7 4.5751 -5.0740 -2.6279 16 14 6.4363 -4.7434 -0.6025 17 1 7.0228 -6.0120 -1.1044 18 1 7.4468 -3.6593 -0.6970 19 1 6.0252 -4.9146 0.8142 20 6 2.2010 -1.2010 0.0005 21 8 1.5226 -2.3788 0.0001 22 1 -0.3634 0.0004 1.0277 23 1 -0.3633 0.8898 -0.5141 24 1 -0.3634 -0.8902 -0.5135 25 1 1.6583 2.1316 -0.0004 26 1 6.1507 -0.1179 -1.0074 27 1 6.1424 0.9482 0.4178 28 1 6.1454 -0.8192 0.6286 29 1 2.8573 -3.7150 0.7447 30 1 4.3900 -4.1782 1.1944 31 1 3.7576 -4.8842 -3.1142 32 1 1.3260 -2.7198 0.8835 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238496273.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:39 Heat of formation + Delta-G solvation = -35.064455 kcal Electronic energy + Delta-G solvation = -17225.717726 eV Core-core repulsion = 14404.762653 eV Total energy + Delta-G solvation = -2820.955072 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.84351 -36.87058 -35.69901 -35.15590 -32.85690 -31.51934 -29.32133 -28.82785 -25.77557 -24.54146 -22.90840 -21.00518 -19.45039 -17.84331 -17.40749 -16.30013 -15.54184 -14.76916 -14.63245 -13.84805 -13.62102 -13.21337 -12.99553 -12.84971 -12.69609 -12.43441 -12.05667 -11.98516 -11.95086 -11.71115 -11.33747 -10.83780 -10.66417 -10.50278 -10.41875 -10.15144 -9.56991 -9.30811 -8.45341 -8.16430 -7.88312 -7.61067 -6.49705 -4.19193 1.52147 1.73061 2.44812 3.23414 3.33161 3.49207 3.90648 4.36079 4.72573 5.04668 5.13577 5.17878 5.38083 5.59785 5.73057 5.75883 5.85599 5.97330 6.07074 6.09961 6.22698 6.44665 6.48881 6.58322 6.67669 6.80685 7.04096 7.30532 7.79151 8.21120 8.22442 8.34879 8.50455 8.85029 9.48725 10.79918 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.021921 B = 0.008512 C = 0.006752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.007640 B = 3288.839028 C = 4146.214184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.117 4.117 3 C -0.118 4.118 4 C -0.042 4.042 5 Cl -0.085 7.085 6 C -0.073 4.073 7 C -0.117 4.117 8 C -0.030 4.030 9 C 0.217 3.783 10 H 0.047 0.953 11 N -0.863 5.863 12 C -0.612 4.612 13 H 0.058 0.942 14 C 0.034 3.966 15 N -0.895 5.895 16 Si 1.036 2.964 17 H -0.283 1.283 18 H -0.281 1.281 19 H -0.277 1.277 20 C 0.127 3.873 21 O -0.477 6.477 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.126 0.874 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.333 0.667 30 H 0.328 0.672 31 H 0.271 0.729 32 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.564 10.234 7.757 13.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.118 4.118 3 C -0.137 4.137 4 C -0.068 4.068 5 Cl -0.057 7.057 6 C -0.075 4.075 7 C -0.173 4.173 8 C -0.031 4.031 9 C 0.107 3.893 10 H 0.065 0.935 11 N -0.397 5.397 12 C -0.651 4.651 13 H 0.076 0.924 14 C -0.172 4.172 15 N -0.528 5.528 16 Si 0.864 3.136 17 H -0.209 1.209 18 H -0.207 1.207 19 H -0.203 1.203 20 C 0.082 3.918 21 O -0.286 6.286 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.092 0.908 25 H 0.144 0.856 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.148 0.852 30 H 0.141 0.859 31 H 0.081 0.919 32 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -2.188 9.944 7.752 12.797 hybrid contribution -1.230 0.529 -0.607 1.470 sum -3.418 10.473 7.145 13.131 Atomic orbital electron populations 1.20604 0.90754 1.02901 1.01850 1.20029 0.96411 0.92107 1.03207 1.20496 0.91581 0.97680 1.03922 1.20625 0.91969 0.85833 1.08371 1.98304 1.77395 1.32771 1.97190 1.19435 0.96690 0.90393 1.00964 1.20870 0.90682 1.02546 1.03195 1.20317 0.92919 0.95469 0.94416 1.18265 0.92905 0.86377 0.91703 0.93495 1.59821 1.08138 1.23281 1.48481 1.22444 1.31871 1.11698 0.99115 0.92423 1.25755 1.01018 0.92504 0.97966 1.70803 1.24595 1.36111 1.21246 0.84112 0.76841 0.76883 0.75782 1.20854 1.20716 1.20318 1.18044 0.89296 0.84634 0.99816 1.84862 1.75595 1.35705 1.32447 0.91673 0.91942 0.90831 0.85606 0.90572 0.91619 0.90710 0.85208 0.85855 0.91872 0.76289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.37 9.79 36.01 0.35 -1.02 16 2 C -0.12 -1.95 5.89 -104.48 -0.62 -2.57 16 3 C -0.12 -1.89 9.48 -39.57 -0.38 -2.27 16 4 C -0.04 -0.71 6.31 -39.49 -0.25 -0.96 16 5 Cl -0.09 -1.26 27.17 -51.86 -1.41 -2.67 16 6 C -0.07 -1.41 5.88 -104.61 -0.62 -2.02 16 7 C -0.12 -2.03 9.04 36.01 0.33 -1.71 16 8 C -0.03 -0.63 4.90 -104.48 -0.51 -1.14 16 9 C 0.22 4.97 2.17 -70.01 -0.15 4.82 16 10 H 0.05 1.08 4.20 -51.93 -0.22 0.87 16 11 N -0.86 -18.00 8.92 -6.65 -0.06 -18.06 16 12 C -0.61 -16.64 8.58 -34.44 -0.30 -16.93 16 13 H 0.06 1.78 7.99 -52.49 -0.42 1.36 16 14 C 0.03 0.95 5.42 -17.82 -0.10 0.86 16 15 N -0.89 -26.74 13.69 55.43 0.76 -25.98 16 16 Si 1.04 23.85 26.67 -169.99 -4.53 19.31 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.28 -5.75 5.71 56.52 0.32 -5.43 16 20 C 0.13 2.48 6.43 -39.23 -0.25 2.22 16 21 O -0.48 -8.94 10.15 -19.49 -0.20 -9.14 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 24 H 0.07 1.01 7.53 -51.93 -0.39 0.62 16 25 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 26 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 27 H 0.06 0.99 6.63 -51.93 -0.34 0.65 16 28 H 0.07 1.31 6.29 -51.93 -0.33 0.98 16 29 H 0.33 6.77 5.81 -39.29 -0.23 6.54 16 30 H 0.33 6.89 6.16 -39.29 -0.24 6.65 16 31 H 0.27 8.21 8.73 -40.82 -0.36 7.85 16 32 H 0.38 5.60 8.00 45.56 0.36 5.96 16 LS Contribution 274.19 15.07 4.13 4.13 Total: -1.00 -29.80 274.19 -6.52 -36.32 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -2.72 Total: 16.80 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -2.49 Total: -20.72 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 0.70 Total: -44.04 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.20 Total: -9.14 kcal Atomic # 14 Polarization: 23.85 SS G_CDS: -4.53 Total: 19.31 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.41 Total: -2.67 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.80 -6.52 -36.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238496273.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.252 kcal (2) G-P(sol) polarization free energy of solvation -29.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds