Wall clock time and date at job start Mon Mar 30 2020 06:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38165 * 120.02180 * 2 1 4 4 C 1.38342 * 120.04348 * 179.97438 * 3 2 1 5 5 Cl 1.73598 * 119.95843 * 180.02562 * 4 3 2 6 6 C 1.38393 * 120.08256 * 359.80065 * 4 3 2 7 7 C 1.50702 * 119.97820 * 180.24677 * 6 4 3 8 8 C 1.38120 * 120.04091 * 0.45440 * 6 4 3 9 9 C 1.50704 * 120.01595 * 179.79253 * 8 6 4 10 10 H 1.08994 * 109.47393 * 12.57534 * 9 8 6 11 11 N 1.46898 * 109.46765 * 132.57888 * 9 8 6 12 12 C 1.50709 * 109.47075 * 252.57326 * 9 8 6 13 13 H 1.07994 * 119.99872 * 354.34162 * 12 9 8 14 14 C 1.37876 * 119.99663 * 174.34561 * 12 9 8 15 15 N 1.31518 * 119.99777 * 159.94909 * 14 12 9 16 16 Si 1.86794 * 120.00096 * 339.67048 * 14 12 9 17 17 H 1.48501 * 109.47125 * 180.27862 * 16 14 12 18 18 H 1.48503 * 109.47376 * 300.27748 * 16 14 12 19 19 H 1.48501 * 109.47487 * 60.27961 * 16 14 12 20 20 C 1.38704 * 120.02048 * 179.97438 * 2 1 3 21 21 O 1.35920 * 120.04167 * 0.04490 * 20 2 1 22 22 H 1.09005 * 109.47157 * 270.02222 * 1 2 3 23 23 H 1.09000 * 109.47038 * 30.01778 * 1 2 3 24 24 H 1.08999 * 109.47291 * 150.02281 * 1 2 3 25 25 H 1.08005 * 119.97888 * 359.97438 * 3 2 1 26 26 H 1.08996 * 109.47474 * 263.29084 * 7 6 4 27 27 H 1.08997 * 109.46842 * 23.28853 * 7 6 4 28 28 H 1.09002 * 109.46901 * 143.28335 * 7 6 4 29 29 H 1.00902 * 111.00400 * 69.75450 * 11 9 8 30 30 H 1.00902 * 110.99825 * 193.71305 * 11 9 8 31 31 H 0.96998 * 119.99979 * 354.39460 * 15 14 12 32 32 H 0.96708 * 113.99968 * 269.97713 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5817 1.1968 0.0005 5 17 4.4480 2.7012 0.0012 6 6 4.2759 -0.0004 0.0052 7 6 5.7829 0.0029 0.0114 8 6 3.5883 -1.1983 -0.0001 9 6 4.3448 -2.5018 0.0003 10 1 5.3937 -2.3131 0.2288 11 7 3.7759 -3.3977 1.0160 12 6 4.2345 -3.1470 -1.3572 13 1 3.5992 -2.7095 -2.1130 14 6 4.9447 -4.2959 -1.6340 15 7 4.5751 -5.0740 -2.6279 16 14 6.4363 -4.7434 -0.6025 17 1 7.0228 -6.0120 -1.1044 18 1 7.4468 -3.6593 -0.6970 19 1 6.0252 -4.9146 0.8142 20 6 2.2010 -1.2010 0.0005 21 8 1.5226 -2.3788 0.0001 22 1 -0.3634 0.0004 1.0277 23 1 -0.3633 0.8898 -0.5141 24 1 -0.3634 -0.8902 -0.5135 25 1 1.6583 2.1316 -0.0004 26 1 6.1507 -0.1179 -1.0074 27 1 6.1424 0.9482 0.4178 28 1 6.1454 -0.8192 0.6286 29 1 2.8573 -3.7150 0.7447 30 1 4.3900 -4.1782 1.1944 31 1 3.7576 -4.8842 -3.1142 32 1 1.3260 -2.7198 0.8835 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238496273.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:38 Heat of formation + Delta-G solvation = -56.699748 kcal Electronic energy + Delta-G solvation = -17226.655902 eV Core-core repulsion = 14404.762653 eV Total energy + Delta-G solvation = -2821.893249 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.25702 -38.22454 -37.09820 -36.77413 -34.52700 -33.34623 -30.67709 -30.17092 -27.69437 -25.82034 -24.58345 -22.49201 -21.01357 -19.87959 -18.86555 -17.79913 -16.94180 -16.25618 -16.18306 -15.58122 -15.01830 -14.88143 -14.58018 -14.32028 -14.09942 -13.89032 -13.57645 -13.39097 -13.22518 -13.13370 -12.72273 -12.46374 -12.23653 -11.95473 -11.80126 -11.71689 -11.43354 -10.98341 -10.57446 -9.64620 -9.45638 -9.23284 -8.64568 -6.41061 0.14679 0.33793 1.15096 1.40401 1.48499 1.67663 2.42972 2.52177 2.98991 3.36466 3.77651 3.83909 4.07995 4.26854 4.34316 4.45180 4.57564 4.72984 4.76682 4.80793 4.85778 5.07144 5.07910 5.22673 5.28245 5.44467 5.57332 5.82757 5.83629 5.97759 6.43319 6.54741 6.85219 6.89694 7.35690 8.55909 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.021921 B = 0.008512 C = 0.006752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.007640 B = 3288.839028 C = 4146.214184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.117 4.117 3 C -0.110 4.110 4 C -0.047 4.047 5 Cl -0.062 7.062 6 C -0.089 4.089 7 C -0.115 4.115 8 C -0.068 4.068 9 C 0.223 3.777 10 H 0.051 0.949 11 N -0.847 5.847 12 C -0.606 4.606 13 H 0.005 0.995 14 C -0.015 4.015 15 N -0.929 5.929 16 Si 1.077 2.923 17 H -0.290 1.290 18 H -0.264 1.264 19 H -0.239 1.239 20 C 0.108 3.892 21 O -0.492 6.492 22 H 0.088 0.912 23 H 0.084 0.916 24 H 0.062 0.938 25 H 0.159 0.841 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.335 0.665 30 H 0.328 0.672 31 H 0.252 0.748 32 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.573 12.045 9.710 15.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.118 4.118 3 C -0.128 4.128 4 C -0.074 4.074 5 Cl -0.033 7.033 6 C -0.091 4.091 7 C -0.171 4.171 8 C -0.070 4.070 9 C 0.113 3.887 10 H 0.068 0.932 11 N -0.381 5.381 12 C -0.645 4.645 13 H 0.023 0.977 14 C -0.215 4.215 15 N -0.564 5.564 16 Si 0.898 3.102 17 H -0.216 1.216 18 H -0.189 1.189 19 H -0.163 1.163 20 C 0.063 3.937 21 O -0.304 6.304 22 H 0.107 0.893 23 H 0.102 0.898 24 H 0.081 0.919 25 H 0.176 0.824 26 H 0.084 0.916 27 H 0.106 0.894 28 H 0.090 0.910 29 H 0.151 0.849 30 H 0.142 0.858 31 H 0.060 0.940 32 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -2.222 11.779 9.729 15.439 hybrid contribution -1.332 0.099 -1.250 1.830 sum -3.554 11.878 8.479 15.021 Atomic orbital electron populations 1.20663 0.88095 1.03430 1.03513 1.20398 0.98354 0.91249 1.01763 1.20909 0.91328 0.98721 1.01866 1.20751 0.92690 0.86277 1.07665 1.98310 1.77030 1.30888 1.97044 1.19630 0.97504 0.90667 1.01275 1.20876 0.89952 1.03651 1.02661 1.20317 0.93889 0.95250 0.97533 1.18079 0.93748 0.87580 0.89267 0.93174 1.59755 1.08119 1.23043 1.47158 1.22511 1.30162 1.11693 1.00167 0.97685 1.27211 1.03435 0.92538 0.98290 1.70947 1.24485 1.37760 1.23225 0.83619 0.73646 0.76707 0.76238 1.21606 1.18928 1.16300 1.18310 0.89150 0.85668 1.00530 1.84817 1.75512 1.36098 1.33931 0.89321 0.89767 0.91924 0.82365 0.91573 0.89419 0.90984 0.84944 0.85835 0.93963 0.74664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.36 9.79 71.24 0.70 -1.66 16 2 C -0.12 -3.67 5.89 -19.77 -0.12 -3.79 16 3 C -0.11 -3.20 9.48 22.28 0.21 -2.99 16 4 C -0.05 -1.52 6.31 22.33 0.14 -1.38 16 5 Cl -0.06 -1.65 27.17 -2.72 -0.07 -1.72 16 6 C -0.09 -3.34 5.88 -19.85 -0.12 -3.46 16 7 C -0.12 -3.88 9.04 71.24 0.64 -3.24 16 8 C -0.07 -2.88 4.90 -19.77 -0.10 -2.98 16 9 C 0.22 10.22 2.17 43.43 0.09 10.32 16 10 H 0.05 2.27 4.20 -2.39 -0.01 2.26 16 11 N -0.85 -34.58 8.92 -174.95 -1.56 -36.14 16 12 C -0.61 -33.96 8.58 25.60 0.22 -33.74 16 13 H 0.00 0.31 7.99 -2.91 -0.02 0.29 16 14 C -0.02 -0.87 5.42 84.65 0.46 -0.41 16 15 N -0.93 -57.66 13.69 21.45 0.29 -57.36 16 16 Si 1.08 47.62 26.67 68.60 1.83 49.45 16 17 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 18 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 19 H -0.24 -9.04 5.71 99.48 0.57 -8.47 16 20 C 0.11 4.18 6.43 22.50 0.14 4.32 16 21 O -0.49 -18.57 10.15 -92.65 -0.94 -19.51 16 22 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 23 H 0.08 1.62 8.09 -2.39 -0.02 1.60 16 24 H 0.06 1.62 7.53 -2.39 -0.02 1.60 16 25 H 0.16 3.55 8.06 -2.91 -0.02 3.52 16 26 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.09 2.48 6.63 -2.39 -0.02 2.46 16 28 H 0.07 2.43 6.29 -2.39 -0.02 2.42 16 29 H 0.34 13.56 5.81 -89.69 -0.52 13.04 16 30 H 0.33 13.20 6.16 -89.69 -0.55 12.65 16 31 H 0.25 16.13 8.73 -92.71 -0.81 15.32 16 32 H 0.40 11.52 8.00 -74.05 -0.59 10.92 16 Total: -1.00 -66.54 274.19 1.17 -65.37 By element: Atomic # 1 Polarization: 39.58 SS G_CDS: -0.66 Total: 38.92 kcal Atomic # 6 Polarization: -41.29 SS G_CDS: 2.28 Total: -39.01 kcal Atomic # 7 Polarization: -92.23 SS G_CDS: -1.27 Total: -93.50 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.94 Total: -19.51 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 1.83 Total: 49.45 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.07 Total: -1.72 kcal Total: -66.54 1.17 -65.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238496273.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.666 kcal (2) G-P(sol) polarization free energy of solvation -66.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds