Wall clock time and date at job start Mon Mar 30 2020 06:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35963 * 117.00063 * 2 1 4 4 C 1.38513 * 120.08154 * 90.00194 * 3 2 1 5 5 C 1.50699 * 119.97952 * 359.72041 * 4 3 2 6 6 C 1.38265 * 120.04303 * 179.75009 * 4 3 2 7 7 C 1.38450 * 120.21268 * 359.95077 * 6 4 3 8 8 Cl 1.73603 * 119.91999 * 180.02562 * 7 6 4 9 9 C 1.38210 * 120.16605 * 0.02562 * 7 6 4 10 10 C 1.38955 * 119.95013 * 0.02562 * 9 7 6 11 11 N 1.39406 * 120.10332 * 180.02562 * 10 9 7 12 12 C 1.46498 * 120.00681 * 89.95274 * 11 10 9 13 13 C 1.36816 * 119.99764 * 269.95768 * 11 10 9 14 14 H 1.07996 * 119.99920 * 22.94566 * 13 11 10 15 15 C 1.38766 * 119.99675 * 202.94800 * 13 11 10 16 16 N 1.31613 * 120.00089 * 13.30719 * 15 13 11 17 17 Si 1.86798 * 119.99765 * 193.30089 * 15 13 11 18 18 H 1.48504 * 109.47387 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46917 * 120.00054 * 17 15 13 20 20 H 1.48496 * 109.47708 * 240.00250 * 17 15 13 21 21 H 1.09000 * 109.46774 * 300.00182 * 1 2 3 22 22 H 1.08994 * 109.46539 * 59.99844 * 1 2 3 23 23 H 1.08994 * 109.47181 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46981 * 90.00279 * 5 4 3 25 25 H 1.08994 * 109.47011 * 210.00553 * 5 4 3 26 26 H 1.09003 * 109.46919 * 330.00575 * 5 4 3 27 27 H 1.07996 * 119.89184 * 179.97438 * 6 4 3 28 28 H 1.08006 * 120.02309 * 180.02562 * 9 7 6 29 29 H 1.08994 * 109.47138 * 95.11051 * 12 11 10 30 30 H 1.08996 * 109.47826 * 215.11433 * 12 11 10 31 31 H 1.09003 * 109.46567 * 335.11812 * 12 11 10 32 32 H 0.97006 * 119.99651 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 2.3616 1.8300 1.1986 5 6 2.0145 1.1628 2.5045 6 6 2.9939 3.0596 1.1976 7 6 3.3154 3.6768 0.0008 8 17 4.1100 5.2203 0.0085 9 6 3.0054 3.0672 -1.2003 10 6 2.3689 1.8320 -1.2073 11 7 2.0551 1.2139 -2.4169 12 6 3.0184 0.3089 -3.0487 13 6 0.8476 1.4528 -3.0140 14 1 0.3012 2.3558 -2.7851 15 6 0.3249 0.5347 -3.9138 16 7 0.8445 -0.6715 -3.9998 17 14 -1.1163 1.0107 -5.0027 18 1 -1.5125 2.4126 -4.7147 19 1 -0.7195 0.8919 -6.4288 20 1 -2.2622 0.1062 -4.7308 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 2.8445 0.5315 2.8218 25 1 1.8260 1.9232 3.2622 26 1 1.1219 0.5509 2.3738 27 1 3.2382 3.5399 2.1336 28 1 3.2576 3.5505 -2.1326 29 1 2.7911 -0.7188 -2.7654 30 1 2.9551 0.4096 -4.1321 31 1 4.0257 0.5624 -2.7184 32 1 0.4793 -1.3131 -4.6290 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258653420.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:14 Heat of formation + Delta-G solvation = 3.840060 kcal Electronic energy + Delta-G solvation = -17237.203745 eV Core-core repulsion = 14417.935699 eV Total energy + Delta-G solvation = -2819.268046 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.58796 -36.88924 -35.94560 -35.37514 -32.20244 -30.87804 -28.64638 -26.97935 -26.04512 -25.52667 -23.43959 -21.17601 -20.28447 -17.15764 -16.87189 -16.06352 -15.73423 -14.90391 -14.66724 -13.86658 -13.43452 -13.36681 -13.00996 -12.98346 -12.56575 -12.39969 -12.03063 -11.84142 -11.41409 -11.08145 -11.00884 -10.87749 -10.66617 -10.53335 -10.38212 -10.12505 -10.05219 -9.24899 -8.64620 -8.13623 -7.79664 -6.98949 -5.85534 -3.37293 1.58574 1.79564 2.49227 3.29340 3.37874 3.39719 3.92057 4.36768 4.64357 5.10226 5.19199 5.33757 5.49840 5.61071 5.80804 5.84366 5.89538 6.05868 6.08388 6.19445 6.37278 6.56163 6.67343 6.67833 6.71524 7.00836 7.14463 7.35597 7.69175 7.72303 8.18682 8.38199 9.08447 9.77129 10.18374 11.17883 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.021407 B = 0.007946 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.681513 B = 3522.909014 C = 4250.077132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.320 6.320 3 C 0.085 3.915 4 C -0.101 4.101 5 C -0.103 4.103 6 C -0.126 4.126 7 C -0.032 4.032 8 Cl -0.092 7.092 9 C -0.125 4.125 10 C 0.211 3.789 11 N -0.559 5.559 12 C 0.167 3.833 13 C -0.263 4.263 14 H 0.069 0.931 15 C 0.014 3.986 16 N -0.892 5.892 17 Si 0.904 3.096 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.288 1.288 21 H 0.026 0.974 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.125 0.875 28 H 0.131 0.869 29 H 0.041 0.959 30 H 0.046 0.954 31 H 0.001 0.999 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.590 4.920 9.493 11.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.236 6.236 3 C 0.038 3.962 4 C -0.103 4.103 5 C -0.160 4.160 6 C -0.145 4.145 7 C -0.059 4.059 8 Cl -0.063 7.063 9 C -0.146 4.146 10 C 0.115 3.885 11 N -0.277 5.277 12 C 0.024 3.976 13 C -0.391 4.391 14 H 0.087 0.913 15 C -0.187 4.187 16 N -0.535 5.535 17 Si 0.733 3.267 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.215 1.215 21 H 0.044 0.956 22 H 0.086 0.914 23 H 0.099 0.901 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.143 0.857 28 H 0.149 0.851 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.019 0.981 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.682 4.683 9.308 10.760 hybrid contribution -0.884 0.478 -0.689 1.219 sum 1.799 5.161 8.619 10.206 Atomic orbital electron populations 1.22850 0.79218 1.02332 1.00449 1.85943 1.19623 1.23885 1.94111 1.19729 0.97768 0.86953 0.91713 1.20019 1.00663 0.94321 0.95295 1.20624 1.02083 0.99981 0.93281 1.20526 1.02329 0.95313 0.96365 1.20738 1.02135 0.88046 0.95009 1.98321 1.79232 1.29777 1.98998 1.21694 1.00673 0.95817 0.96457 1.18003 0.92253 0.90345 0.87885 1.41309 1.16450 1.52398 1.17568 1.20871 0.86574 0.93526 0.96613 1.19072 0.96569 1.02183 1.21241 0.91286 1.25029 0.98236 0.94718 1.00676 1.70111 1.42543 1.03599 1.37245 0.86212 0.81930 0.78016 0.80569 1.20147 1.21317 1.21498 0.95564 0.91414 0.90075 0.91287 0.92045 0.91426 0.85672 0.85122 0.94019 0.93519 0.98084 0.93512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.87 10.76 101.05 1.09 1.96 16 2 O -0.32 -6.89 9.38 -19.62 -0.18 -7.07 16 3 C 0.09 1.76 5.72 -39.00 -0.22 1.54 16 4 C -0.10 -1.73 5.89 -104.51 -0.62 -2.35 16 5 C -0.10 -1.40 9.79 36.01 0.35 -1.05 16 6 C -0.13 -2.01 9.48 -39.49 -0.37 -2.38 16 7 C -0.03 -0.55 6.32 -39.51 -0.25 -0.80 16 8 Cl -0.09 -1.36 28.95 -51.86 -1.50 -2.86 16 9 C -0.13 -2.45 9.75 -39.33 -0.38 -2.84 16 10 C 0.21 4.69 5.03 -83.67 -0.42 4.27 16 11 N -0.56 -13.97 2.68 -120.39 -0.32 -14.30 16 12 C 0.17 4.14 8.97 59.85 0.54 4.68 16 13 C -0.26 -6.95 8.42 -15.13 -0.13 -7.08 16 14 H 0.07 1.83 7.86 -52.49 -0.41 1.42 16 15 C 0.01 0.36 5.09 -17.45 -0.09 0.27 16 16 N -0.89 -24.81 10.72 55.49 0.59 -24.21 16 17 Si 0.90 21.01 29.57 -169.99 -5.03 15.99 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H 0.03 0.42 7.24 -51.93 -0.38 0.05 16 22 H 0.07 1.49 6.88 -51.93 -0.36 1.13 16 23 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 26 H 0.07 0.94 6.30 -51.93 -0.33 0.61 16 27 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 28 H 0.13 2.55 8.06 -52.48 -0.42 2.12 16 29 H 0.04 1.12 7.34 -51.93 -0.38 0.74 16 30 H 0.05 1.20 7.34 -51.93 -0.38 0.82 16 31 H 0.00 0.01 8.01 -51.93 -0.42 -0.40 16 32 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 287.58 15.07 4.33 4.33 Total: -1.00 -28.02 287.58 -6.51 -34.53 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -3.90 Total: -2.62 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -0.51 Total: -3.79 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.27 Total: -38.51 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -0.18 Total: -7.07 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.99 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -1.50 Total: -2.86 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.02 -6.51 -34.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258653420.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.372 kcal (2) G-P(sol) polarization free energy of solvation -28.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds