Wall clock time and date at job start Mon Mar 30 2020 06:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35963 * 117.00063 * 2 1 4 4 C 1.38513 * 120.08154 * 90.00194 * 3 2 1 5 5 C 1.50699 * 119.97952 * 359.72041 * 4 3 2 6 6 C 1.38265 * 120.04303 * 179.75009 * 4 3 2 7 7 C 1.38450 * 120.21268 * 359.95077 * 6 4 3 8 8 Cl 1.73603 * 119.91999 * 180.02562 * 7 6 4 9 9 C 1.38210 * 120.16605 * 0.02562 * 7 6 4 10 10 C 1.38955 * 119.95013 * 0.02562 * 9 7 6 11 11 N 1.39406 * 120.10332 * 180.02562 * 10 9 7 12 12 C 1.46498 * 120.00681 * 89.95274 * 11 10 9 13 13 C 1.36816 * 119.99764 * 269.95768 * 11 10 9 14 14 H 1.07996 * 119.99920 * 22.94566 * 13 11 10 15 15 C 1.38766 * 119.99675 * 202.94800 * 13 11 10 16 16 N 1.31613 * 120.00089 * 13.30719 * 15 13 11 17 17 Si 1.86798 * 119.99765 * 193.30089 * 15 13 11 18 18 H 1.48504 * 109.47387 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46917 * 120.00054 * 17 15 13 20 20 H 1.48496 * 109.47708 * 240.00250 * 17 15 13 21 21 H 1.09000 * 109.46774 * 300.00182 * 1 2 3 22 22 H 1.08994 * 109.46539 * 59.99844 * 1 2 3 23 23 H 1.08994 * 109.47181 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46981 * 90.00279 * 5 4 3 25 25 H 1.08994 * 109.47011 * 210.00553 * 5 4 3 26 26 H 1.09003 * 109.46919 * 330.00575 * 5 4 3 27 27 H 1.07996 * 119.89184 * 179.97438 * 6 4 3 28 28 H 1.08006 * 120.02309 * 180.02562 * 9 7 6 29 29 H 1.08994 * 109.47138 * 95.11051 * 12 11 10 30 30 H 1.08996 * 109.47826 * 215.11433 * 12 11 10 31 31 H 1.09003 * 109.46567 * 335.11812 * 12 11 10 32 32 H 0.97006 * 119.99651 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 2.3616 1.8300 1.1986 5 6 2.0145 1.1628 2.5045 6 6 2.9939 3.0596 1.1976 7 6 3.3154 3.6768 0.0008 8 17 4.1100 5.2203 0.0085 9 6 3.0054 3.0672 -1.2003 10 6 2.3689 1.8320 -1.2073 11 7 2.0551 1.2139 -2.4169 12 6 3.0184 0.3089 -3.0487 13 6 0.8476 1.4528 -3.0140 14 1 0.3012 2.3558 -2.7851 15 6 0.3249 0.5347 -3.9138 16 7 0.8445 -0.6715 -3.9998 17 14 -1.1163 1.0107 -5.0027 18 1 -1.5125 2.4126 -4.7147 19 1 -0.7195 0.8919 -6.4288 20 1 -2.2622 0.1062 -4.7308 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 2.8445 0.5315 2.8218 25 1 1.8260 1.9232 3.2622 26 1 1.1219 0.5509 2.3738 27 1 3.2382 3.5399 2.1336 28 1 3.2576 3.5505 -2.1326 29 1 2.7911 -0.7188 -2.7654 30 1 2.9551 0.4096 -4.1321 31 1 4.0257 0.5624 -2.7184 32 1 0.4793 -1.3131 -4.6290 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258653420.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:14 Heat of formation + Delta-G solvation = -11.112030 kcal Electronic energy + Delta-G solvation = -17237.852116 eV Core-core repulsion = 14417.935699 eV Total energy + Delta-G solvation = -2819.916417 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.09148 -38.34170 -37.57441 -36.90101 -33.88072 -32.49308 -30.25164 -28.41021 -27.94517 -27.03658 -25.23564 -22.63852 -21.88894 -18.95526 -18.50836 -17.61872 -17.37123 -16.51284 -16.25602 -15.59440 -15.17632 -14.89343 -14.52502 -14.36292 -14.15672 -13.63257 -13.56679 -13.08385 -13.02397 -12.95004 -12.70043 -12.56464 -12.29309 -12.13112 -12.06747 -11.80652 -11.71462 -10.93133 -10.56372 -9.56535 -9.26326 -8.95574 -7.87969 -5.42076 0.13517 0.35284 1.15658 1.43096 1.45958 1.55361 2.43548 2.47535 3.15595 3.26741 3.47549 3.90670 4.17545 4.30265 4.41082 4.48608 4.64148 4.67104 4.71302 4.84260 4.86456 4.97752 5.13271 5.18322 5.26561 5.39222 5.51613 5.61023 5.67447 5.78601 6.29360 6.73820 7.07035 7.82807 8.23004 9.14981 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.021407 B = 0.007946 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.681513 B = 3522.909014 C = 4250.077132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.340 6.340 3 C 0.063 3.937 4 C -0.094 4.094 5 C -0.101 4.101 6 C -0.110 4.110 7 C -0.030 4.030 8 Cl -0.066 7.066 9 C -0.133 4.133 10 C 0.170 3.830 11 N -0.570 5.570 12 C 0.185 3.815 13 C -0.263 4.263 14 H 0.062 0.938 15 C -0.033 4.033 16 N -0.922 5.922 17 Si 0.964 3.036 18 H -0.270 1.270 19 H -0.289 1.289 20 H -0.287 1.287 21 H 0.058 0.942 22 H 0.031 0.969 23 H 0.090 0.910 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.062 0.938 27 H 0.165 0.835 28 H 0.123 0.877 29 H 0.013 0.987 30 H 0.026 0.974 31 H 0.020 0.980 32 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.711 6.474 11.784 13.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.257 6.257 3 C 0.017 3.983 4 C -0.095 4.095 5 C -0.158 4.158 6 C -0.129 4.129 7 C -0.057 4.057 8 Cl -0.038 7.038 9 C -0.154 4.154 10 C 0.076 3.924 11 N -0.289 5.289 12 C 0.041 3.959 13 C -0.391 4.391 14 H 0.080 0.920 15 C -0.230 4.230 16 N -0.567 5.567 17 Si 0.792 3.208 18 H -0.194 1.194 19 H -0.215 1.215 20 H -0.214 1.214 21 H 0.076 0.924 22 H 0.050 0.950 23 H 0.109 0.891 24 H 0.099 0.901 25 H 0.112 0.888 26 H 0.081 0.919 27 H 0.182 0.818 28 H 0.141 0.859 29 H 0.031 0.969 30 H 0.045 0.955 31 H 0.039 0.961 32 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.812 6.270 11.629 13.508 hybrid contribution -0.832 0.111 -1.273 1.525 sum 1.980 6.381 10.356 12.324 Atomic orbital electron populations 1.22840 0.78478 1.02918 1.00169 1.85903 1.20591 1.24937 1.94258 1.19845 0.98710 0.87200 0.92544 1.20358 0.99289 0.94396 0.95470 1.20718 1.02287 1.00824 0.91961 1.20954 1.00096 0.94463 0.97338 1.20788 1.01457 0.88922 0.94519 1.98333 1.78597 1.27878 1.98945 1.21547 1.01123 0.95306 0.97442 1.18287 0.95147 0.91575 0.87433 1.41310 1.15959 1.52556 1.19055 1.20551 0.87677 0.92294 0.95372 1.19176 0.96882 1.01736 1.21317 0.91976 1.25683 1.00663 0.94685 1.01981 1.70256 1.44022 1.04421 1.37995 0.85272 0.79142 0.77873 0.78553 1.19419 1.21539 1.21399 0.92374 0.94977 0.89127 0.90066 0.88807 0.91901 0.81797 0.85885 0.96877 0.95488 0.96135 0.93956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.91 10.76 113.37 1.22 3.13 16 2 O -0.34 -14.72 9.38 -93.13 -0.87 -15.59 16 3 C 0.06 2.58 5.72 22.65 0.13 2.70 16 4 C -0.09 -2.93 5.89 -19.79 -0.12 -3.05 16 5 C -0.10 -2.36 9.79 71.24 0.70 -1.66 16 6 C -0.11 -3.08 9.48 22.33 0.21 -2.86 16 7 C -0.03 -0.94 6.32 22.31 0.14 -0.80 16 8 Cl -0.07 -1.77 28.95 -2.72 -0.08 -1.85 16 9 C -0.13 -5.16 9.75 22.44 0.22 -4.94 16 10 C 0.17 7.62 5.03 38.42 0.19 7.81 16 11 N -0.57 -29.37 2.68 -534.81 -1.43 -30.80 16 12 C 0.18 9.54 8.97 127.77 1.15 10.68 16 13 C -0.26 -14.31 8.42 84.04 0.71 -13.60 16 14 H 0.06 3.40 7.86 -2.91 -0.02 3.37 16 15 C -0.03 -1.82 5.09 84.85 0.43 -1.38 16 16 N -0.92 -53.18 10.72 21.64 0.23 -52.94 16 17 Si 0.96 44.14 29.57 68.60 2.03 46.17 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 19 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 20 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 21 H 0.06 1.80 7.24 -2.39 -0.02 1.78 16 22 H 0.03 1.44 6.88 -2.39 -0.02 1.42 16 23 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 24 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.09 1.60 8.08 -2.39 -0.02 1.58 16 26 H 0.06 1.55 6.30 -2.39 -0.02 1.53 16 27 H 0.16 3.36 8.06 -2.91 -0.02 3.33 16 28 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 29 H 0.01 0.73 7.34 -2.39 -0.02 0.71 16 30 H 0.03 1.44 7.34 -2.39 -0.02 1.43 16 31 H 0.02 0.93 8.01 -2.39 -0.02 0.92 16 32 H 0.25 14.00 8.31 -92.70 -0.77 13.23 16 Total: -1.00 -61.98 287.58 5.97 -56.01 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: 1.12 Total: 2.98 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 4.98 Total: -3.97 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -1.20 Total: -83.75 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.87 Total: -15.59 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -0.08 Total: -1.85 kcal Total: -61.98 5.97 -56.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258653420.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.897 kcal (2) G-P(sol) polarization free energy of solvation -61.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds