Wall clock time and date at job start Mon Mar 30 2020 06:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35927 * 117.00030 * 2 1 4 4 C 1.38739 * 120.03700 * 90.00372 * 3 2 1 5 5 C 1.50695 * 120.02610 * 359.95322 * 4 3 2 6 6 C 1.38125 * 119.95713 * 179.97438 * 4 3 2 7 7 C 1.38390 * 120.04103 * 359.97438 * 6 4 3 8 8 Cl 1.73592 * 119.95962 * 179.97438 * 7 6 4 9 9 C 1.38354 * 120.08355 * 359.97438 * 7 6 4 10 10 C 1.38161 * 120.04114 * 0.02562 * 9 7 6 11 11 C 1.50707 * 120.02092 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.46991 * 259.97644 * 11 10 9 13 13 C 1.36935 * 119.99463 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00472 * 359.97438 * 13 12 11 15 15 C 1.38817 * 119.99595 * 179.97438 * 13 12 11 16 16 N 1.31624 * 120.00022 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99835 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46733 * 90.00690 * 17 15 13 19 19 H 1.48497 * 109.47202 * 210.00014 * 17 15 13 20 20 H 1.48488 * 109.47353 * 330.00601 * 17 15 13 21 21 H 1.09002 * 109.47279 * 59.99379 * 1 2 3 22 22 H 1.08991 * 109.47318 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46897 * 300.00390 * 1 2 3 24 24 H 1.08997 * 109.47461 * 270.02670 * 5 4 3 25 25 H 1.09004 * 109.47475 * 30.02347 * 5 4 3 26 26 H 1.09000 * 109.47606 * 150.02439 * 5 4 3 27 27 H 1.07998 * 119.98307 * 179.72240 * 6 4 3 28 28 H 1.07999 * 119.97736 * 179.97438 * 9 7 6 29 29 H 1.08996 * 109.46777 * 19.97680 * 11 10 9 30 30 H 1.09000 * 109.46773 * 139.97470 * 11 10 9 31 31 H 0.96999 * 120.00083 * 359.97438 * 12 11 10 32 32 H 0.97002 * 119.99908 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 2.3614 1.8299 1.2011 5 6 2.0192 1.1602 2.5070 6 6 2.9890 3.0603 1.1991 7 6 3.3037 3.6757 0.0002 8 17 4.0918 5.2224 0.0002 9 6 2.9909 3.0597 -1.1985 10 6 2.3632 1.8289 -1.2006 11 6 2.0233 1.1581 -2.5066 12 7 0.6067 1.3732 -2.8118 13 6 0.0663 0.8517 -3.9569 14 1 0.6844 0.2823 -4.6352 15 6 -1.2762 1.0551 -4.2459 16 7 -2.0294 1.7495 -3.4195 17 14 -2.0133 0.3444 -5.8084 18 1 -2.5348 -1.0187 -5.5340 19 1 -3.1232 1.2149 -6.2725 20 1 -0.9679 0.2720 -6.8604 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.0211 1.4656 2.8213 25 1 2.0442 0.0781 2.3780 26 1 2.7445 1.4525 3.2663 27 1 3.2306 3.5444 2.1338 28 1 3.2369 3.5416 -2.1332 29 1 2.6350 1.5821 -3.3029 30 1 2.2197 0.0888 -2.4277 31 1 0.0514 1.8843 -2.2025 32 1 -2.9676 1.8913 -3.6213 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258683693.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:35 Heat of formation + Delta-G solvation = -13.124642 kcal Electronic energy + Delta-G solvation = -16770.392908 eV Core-core repulsion = 13950.389217 eV Total energy + Delta-G solvation = -2820.003691 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.03696 -37.24866 -36.06671 -34.97353 -32.76428 -31.10512 -29.61265 -27.30856 -26.07532 -25.40497 -22.90628 -21.46576 -20.56210 -17.50847 -17.12206 -16.41665 -15.71101 -15.26358 -14.60390 -14.00219 -13.62164 -13.46561 -13.28090 -13.20439 -12.90654 -12.66471 -12.32005 -12.09436 -11.90662 -11.39574 -11.06691 -11.00824 -10.83806 -10.70722 -10.59670 -10.08093 -9.82666 -9.46878 -8.92114 -8.57922 -8.20441 -6.97961 -5.81652 -3.10916 1.20766 1.39276 2.23644 3.41409 3.46558 3.48258 3.52434 4.27963 4.57813 4.85129 4.91559 5.22131 5.44997 5.49280 5.55991 5.64105 5.72446 5.75565 5.89440 5.97727 6.01310 6.10839 6.25873 6.34470 6.47125 6.55158 6.62669 6.78803 6.93075 7.66737 7.86691 8.35982 9.47780 10.01199 10.37663 11.40860 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.023325 B = 0.006211 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.159852 B = 4506.776223 C = 5302.482220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.333 6.333 3 C 0.118 3.882 4 C -0.101 4.101 5 C -0.108 4.108 6 C -0.107 4.107 7 C -0.040 4.040 8 Cl -0.080 7.080 9 C -0.089 4.089 10 C -0.083 4.083 11 C 0.190 3.810 12 N -0.724 5.724 13 C -0.239 4.239 14 H 0.072 0.928 15 C -0.012 4.012 16 N -0.934 5.934 17 Si 0.908 3.092 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.282 1.282 21 H 0.086 0.914 22 H 0.087 0.913 23 H 0.034 0.966 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.131 0.869 28 H 0.136 0.864 29 H 0.031 0.969 30 H 0.040 0.960 31 H 0.383 0.617 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.312 1.682 10.931 14.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.250 6.250 3 C 0.074 3.926 4 C -0.102 4.102 5 C -0.165 4.165 6 C -0.126 4.126 7 C -0.067 4.067 8 Cl -0.051 7.051 9 C -0.109 4.109 10 C -0.084 4.084 11 C 0.063 3.937 12 N -0.369 5.369 13 C -0.370 4.370 14 H 0.090 0.910 15 C -0.208 4.208 16 N -0.582 5.582 17 Si 0.739 3.261 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.207 1.207 21 H 0.105 0.895 22 H 0.105 0.895 23 H 0.052 0.948 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.149 0.851 28 H 0.154 0.846 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.218 0.782 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.432 1.553 10.753 14.387 hybrid contribution -0.751 0.213 -0.671 1.029 sum 8.681 1.766 10.082 13.421 Atomic orbital electron populations 1.23242 0.77396 1.03354 1.02390 1.85874 1.20854 1.23995 1.94308 1.18456 0.96602 0.86538 0.91047 1.20079 1.00243 0.94299 0.95540 1.20667 1.01575 1.01236 0.92982 1.20682 1.00380 0.94754 0.96746 1.20816 1.02274 0.88532 0.95067 1.98344 1.79162 1.28598 1.98976 1.20900 0.98592 0.94389 0.96990 1.20584 0.97559 0.93761 0.96508 1.19610 0.88119 0.97079 0.88895 1.42392 1.03795 1.64930 1.25794 1.19239 0.92885 1.26690 0.98141 0.90974 1.24728 0.96415 1.00834 0.98819 1.69657 1.06499 1.44659 1.37406 0.86168 0.78739 0.78263 0.82885 1.21691 1.21798 1.20734 0.89549 0.89457 0.94766 0.91251 0.90635 0.91576 0.85064 0.84593 0.95115 0.94188 0.78229 0.93451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.13 101.05 1.12 1.65 16 2 O -0.33 -6.02 8.70 -19.51 -0.17 -6.19 16 3 C 0.12 2.06 5.67 -39.23 -0.22 1.83 16 4 C -0.10 -1.48 5.89 -104.48 -0.62 -2.10 16 5 C -0.11 -1.26 9.79 36.00 0.35 -0.91 16 6 C -0.11 -1.47 9.48 -39.57 -0.38 -1.84 16 7 C -0.04 -0.60 6.32 -39.48 -0.25 -0.85 16 8 Cl -0.08 -1.04 28.95 -51.86 -1.50 -2.55 16 9 C -0.09 -1.47 9.45 -39.57 -0.37 -1.84 16 10 C -0.08 -1.51 5.26 -104.48 -0.55 -2.06 16 11 C 0.19 3.95 6.05 -5.19 -0.03 3.92 16 12 N -0.72 -17.96 4.44 -61.08 -0.27 -18.23 16 13 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 14 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 15 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 16 N -0.93 -27.37 13.06 55.49 0.72 -26.65 16 17 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H 0.09 1.84 5.62 -51.93 -0.29 1.55 16 22 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 23 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.07 0.91 7.53 -51.93 -0.39 0.52 16 26 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 27 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 28 H 0.14 2.13 8.04 -52.49 -0.42 1.71 16 29 H 0.03 0.63 8.00 -51.93 -0.42 0.21 16 30 H 0.04 0.86 7.85 -51.93 -0.41 0.45 16 31 H 0.38 10.04 6.52 -40.82 -0.27 9.78 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 290.82 15.07 4.38 4.38 Total: -1.00 -28.94 290.82 -6.90 -35.83 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -3.85 Total: 5.69 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -1.19 Total: -9.30 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 0.45 Total: -44.88 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.17 Total: -6.19 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.50 Total: -2.55 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.94 -6.90 -35.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258683693.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.708 kcal (2) G-P(sol) polarization free energy of solvation -28.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds