Wall clock time and date at job start Mon Mar 30 2020 06:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35927 * 117.00030 * 2 1 4 4 C 1.38739 * 120.03700 * 90.00372 * 3 2 1 5 5 C 1.50695 * 120.02610 * 359.95322 * 4 3 2 6 6 C 1.38125 * 119.95713 * 179.97438 * 4 3 2 7 7 C 1.38390 * 120.04103 * 359.97438 * 6 4 3 8 8 Cl 1.73592 * 119.95962 * 179.97438 * 7 6 4 9 9 C 1.38354 * 120.08355 * 359.97438 * 7 6 4 10 10 C 1.38161 * 120.04114 * 0.02562 * 9 7 6 11 11 C 1.50707 * 120.02092 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.46991 * 259.97644 * 11 10 9 13 13 C 1.36935 * 119.99463 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00472 * 359.97438 * 13 12 11 15 15 C 1.38817 * 119.99595 * 179.97438 * 13 12 11 16 16 N 1.31624 * 120.00022 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99835 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46733 * 90.00690 * 17 15 13 19 19 H 1.48497 * 109.47202 * 210.00014 * 17 15 13 20 20 H 1.48488 * 109.47353 * 330.00601 * 17 15 13 21 21 H 1.09002 * 109.47279 * 59.99379 * 1 2 3 22 22 H 1.08991 * 109.47318 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46897 * 300.00390 * 1 2 3 24 24 H 1.08997 * 109.47461 * 270.02670 * 5 4 3 25 25 H 1.09004 * 109.47475 * 30.02347 * 5 4 3 26 26 H 1.09000 * 109.47606 * 150.02439 * 5 4 3 27 27 H 1.07998 * 119.98307 * 179.72240 * 6 4 3 28 28 H 1.07999 * 119.97736 * 179.97438 * 9 7 6 29 29 H 1.08996 * 109.46777 * 19.97680 * 11 10 9 30 30 H 1.09000 * 109.46773 * 139.97470 * 11 10 9 31 31 H 0.96999 * 120.00083 * 359.97438 * 12 11 10 32 32 H 0.97002 * 119.99908 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 2.3614 1.8299 1.2011 5 6 2.0192 1.1602 2.5070 6 6 2.9890 3.0603 1.1991 7 6 3.3037 3.6757 0.0002 8 17 4.0918 5.2224 0.0002 9 6 2.9909 3.0597 -1.1985 10 6 2.3632 1.8289 -1.2006 11 6 2.0233 1.1581 -2.5066 12 7 0.6067 1.3732 -2.8118 13 6 0.0663 0.8517 -3.9569 14 1 0.6844 0.2823 -4.6352 15 6 -1.2762 1.0551 -4.2459 16 7 -2.0294 1.7495 -3.4195 17 14 -2.0133 0.3444 -5.8084 18 1 -2.5348 -1.0187 -5.5340 19 1 -3.1232 1.2149 -6.2725 20 1 -0.9679 0.2720 -6.8604 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.0211 1.4656 2.8213 25 1 2.0442 0.0781 2.3780 26 1 2.7445 1.4525 3.2663 27 1 3.2306 3.5444 2.1338 28 1 3.2369 3.5416 -2.1332 29 1 2.6350 1.5821 -3.3029 30 1 2.2197 0.0888 -2.4277 31 1 0.0514 1.8843 -2.2025 32 1 -2.9676 1.8913 -3.6213 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258683693.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:35 Heat of formation + Delta-G solvation = -29.553405 kcal Electronic energy + Delta-G solvation = -16771.105313 eV Core-core repulsion = 13950.389217 eV Total energy + Delta-G solvation = -2820.716095 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.31443 -38.50082 -37.26730 -36.70878 -34.31901 -32.69905 -31.13494 -28.55624 -27.48997 -26.95287 -24.76974 -22.71600 -21.94246 -19.33608 -18.61148 -17.69887 -17.00298 -16.76685 -16.35232 -15.59855 -15.18045 -14.88950 -14.76002 -14.51450 -14.24358 -13.77313 -13.72179 -13.44353 -13.06571 -13.00899 -12.77881 -12.57243 -12.31336 -12.11083 -11.97784 -11.81633 -11.75212 -11.00137 -10.80688 -9.81663 -9.43619 -9.01335 -7.95042 -5.24490 -0.03904 0.16769 1.08616 1.48731 1.49474 1.58063 2.25872 2.57189 2.99616 3.38402 3.66586 3.72259 4.09163 4.13937 4.28939 4.31436 4.44156 4.58360 4.60054 4.68656 4.77357 4.81097 4.91561 5.04348 5.12867 5.19426 5.30553 5.48847 5.50535 5.58406 6.24946 6.53232 7.32688 8.01143 8.29485 9.27710 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.023325 B = 0.006211 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.159852 B = 4506.776223 C = 5302.482220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.342 6.342 3 C 0.096 3.904 4 C -0.097 4.097 5 C -0.107 4.107 6 C -0.096 4.096 7 C -0.041 4.041 8 Cl -0.062 7.062 9 C -0.098 4.098 10 C -0.105 4.105 11 C 0.195 3.805 12 N -0.729 5.729 13 C -0.245 4.245 14 H 0.075 0.925 15 C -0.067 4.067 16 N -0.965 5.965 17 Si 0.972 3.028 18 H -0.286 1.286 19 H -0.296 1.296 20 H -0.272 1.272 21 H 0.045 0.955 22 H 0.100 0.900 23 H 0.054 0.946 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.165 0.835 28 H 0.136 0.864 29 H 0.033 0.967 30 H 0.030 0.970 31 H 0.374 0.626 32 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.158 2.014 12.259 16.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.259 6.259 3 C 0.052 3.948 4 C -0.097 4.097 5 C -0.163 4.163 6 C -0.115 4.115 7 C -0.067 4.067 8 Cl -0.033 7.033 9 C -0.118 4.118 10 C -0.106 4.106 11 C 0.069 3.931 12 N -0.373 5.373 13 C -0.376 4.376 14 H 0.093 0.907 15 C -0.260 4.260 16 N -0.615 5.615 17 Si 0.801 3.199 18 H -0.213 1.213 19 H -0.222 1.222 20 H -0.197 1.197 21 H 0.064 0.936 22 H 0.118 0.882 23 H 0.073 0.927 24 H 0.097 0.903 25 H 0.088 0.912 26 H 0.113 0.887 27 H 0.183 0.817 28 H 0.154 0.846 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.207 0.793 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 10.321 1.877 12.079 15.999 hybrid contribution -0.910 0.161 -1.015 1.373 sum 9.411 2.037 11.064 14.667 Atomic orbital electron populations 1.23136 0.77493 1.03865 1.01303 1.85861 1.20868 1.24768 1.94382 1.18705 0.97413 0.86795 0.91877 1.20403 0.99142 0.94413 0.95791 1.20750 1.02966 1.00655 0.91915 1.21069 0.98628 0.94120 0.97635 1.20906 1.01805 0.89175 0.94856 1.98352 1.78704 1.27258 1.98942 1.20911 0.98927 0.93940 0.97997 1.20392 0.99696 0.94916 0.95593 1.19554 0.86019 0.96798 0.90771 1.42488 1.05329 1.64511 1.24967 1.19585 0.93236 1.26097 0.98725 0.90746 1.25481 0.96884 1.01765 1.01832 1.69807 1.06404 1.46230 1.39085 0.85165 0.77769 0.77331 0.79614 1.21315 1.22231 1.19700 0.93642 0.88176 0.92712 0.90252 0.91162 0.88696 0.81704 0.84575 0.94887 0.95197 0.79290 0.93941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.27 11.13 113.37 1.26 2.53 16 2 O -0.34 -12.33 8.70 -92.73 -0.81 -13.13 16 3 C 0.10 3.31 5.67 22.50 0.13 3.44 16 4 C -0.10 -2.63 5.89 -19.77 -0.12 -2.74 16 5 C -0.11 -2.15 9.79 71.23 0.70 -1.45 16 6 C -0.10 -2.35 9.48 22.28 0.21 -2.13 16 7 C -0.04 -1.13 6.32 22.33 0.14 -0.99 16 8 Cl -0.06 -1.47 28.95 -2.72 -0.08 -1.55 16 9 C -0.10 -3.20 9.45 22.28 0.21 -2.99 16 10 C -0.10 -3.86 5.26 -19.77 -0.10 -3.96 16 11 C 0.19 8.32 6.05 85.64 0.52 8.84 16 12 N -0.73 -37.21 4.44 -347.17 -1.54 -38.75 16 13 C -0.25 -13.60 9.99 84.03 0.84 -12.76 16 14 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 15 C -0.07 -3.78 5.50 84.86 0.47 -3.32 16 16 N -0.96 -57.73 13.06 21.65 0.28 -57.44 16 17 Si 0.97 45.71 29.55 68.60 2.03 47.73 16 18 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 19 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H 0.04 2.00 5.62 -2.39 -0.01 1.98 16 22 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 23 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.07 1.52 7.53 -2.38 -0.02 1.50 16 26 H 0.09 1.38 8.09 -2.39 -0.02 1.36 16 27 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 28 H 0.14 4.28 8.04 -2.91 -0.02 4.25 16 29 H 0.03 1.38 8.00 -2.39 -0.02 1.36 16 30 H 0.03 1.33 7.85 -2.39 -0.02 1.31 16 31 H 0.37 20.31 6.52 -92.71 -0.60 19.70 16 32 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -62.23 290.82 4.67 -57.56 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.53 Total: 21.12 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 4.25 Total: -15.54 kcal Atomic # 7 Polarization: -94.94 SS G_CDS: -1.26 Total: -96.20 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -0.81 Total: -13.13 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.08 Total: -1.55 kcal Total: -62.23 4.67 -57.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258683693.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.011 kcal (2) G-P(sol) polarization free energy of solvation -62.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds