Wall clock time and date at job start Mon Mar 30 2020 06:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35928 * 116.99822 * 2 1 4 4 C 1.38742 * 120.03887 * 359.72505 * 3 2 1 5 5 C 1.38127 * 119.94938 * 179.76536 * 4 3 2 6 6 C 1.38382 * 120.04682 * 0.51283 * 5 4 3 7 7 Cl 1.73601 * 119.95948 * 179.76252 * 6 5 4 8 8 C 1.38349 * 120.08305 * 359.74225 * 6 5 4 9 9 C 1.38160 * 120.04293 * 0.02562 * 8 6 5 10 10 C 1.50697 * 120.02101 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.47399 * 265.01859 * 10 9 8 12 12 N 1.46499 * 109.47548 * 179.97438 * 11 10 9 13 13 C 1.36930 * 120.00180 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00294 * 0.02562 * 13 12 11 15 15 C 1.38817 * 120.00048 * 180.02562 * 13 12 11 16 16 N 1.31616 * 119.99687 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99807 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47317 * 90.00068 * 17 15 13 19 19 H 1.48507 * 109.46890 * 209.99712 * 17 15 13 20 20 H 1.48498 * 109.47439 * 329.99895 * 17 15 13 21 21 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47054 * 299.99733 * 1 2 3 23 23 H 1.09000 * 109.47187 * 59.99789 * 1 2 3 24 24 H 1.07991 * 120.02758 * 0.02562 * 4 3 2 25 25 H 1.08005 * 119.97727 * 180.22934 * 5 4 3 26 26 H 1.07998 * 119.97861 * 180.02562 * 8 6 5 27 27 H 1.09000 * 109.47579 * 25.02658 * 10 9 8 28 28 H 1.09007 * 109.47100 * 145.02180 * 10 9 8 29 29 H 1.09002 * 109.47561 * 300.00380 * 11 10 9 30 30 H 1.09007 * 109.46733 * 60.00096 * 11 10 9 31 31 H 0.97002 * 119.99708 * 0.02562 * 12 11 10 32 32 H 0.97002 * 119.99577 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2912 2.3752 -0.0058 5 6 1.9202 3.6050 -0.0009 6 6 3.3021 3.6764 -0.0009 7 17 4.0903 5.2233 -0.0010 8 6 4.0565 2.5167 -0.0005 9 6 3.4312 1.2848 -0.0006 10 6 4.2534 0.0218 -0.0007 11 6 4.4266 -0.4738 -1.4377 12 7 5.2264 -1.7012 -1.4380 13 6 5.5133 -2.3313 -2.6194 14 1 5.1503 -1.9232 -3.5511 15 6 6.2707 -3.4946 -2.6195 16 7 6.7135 -3.9917 -1.4841 17 14 6.6626 -4.3538 -4.2313 18 1 7.9353 -3.8204 -4.7799 19 1 6.7991 -5.8133 -3.9937 20 1 5.5650 -4.1107 -5.2015 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.2128 2.3199 -0.0098 25 1 1.3330 4.5114 -0.0016 26 1 5.1350 2.5745 -0.0001 27 1 5.2320 0.2253 0.4340 28 1 3.7459 -0.7421 0.5884 29 1 3.4480 -0.6774 -1.8724 30 1 4.9340 0.2902 -2.0269 31 1 5.5522 -2.0680 -0.6011 32 1 7.2431 -4.8044 -1.4842 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258849970.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:53 Heat of formation + Delta-G solvation = -15.663646 kcal Electronic energy + Delta-G solvation = -16132.834958 eV Core-core repulsion = 13312.721168 eV Total energy + Delta-G solvation = -2820.113790 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 6.17 seconds Orbital eigenvalues (eV) -40.33230 -37.71752 -36.32621 -35.12779 -32.86214 -30.74445 -29.98333 -27.85239 -27.09825 -24.02290 -22.28093 -22.00180 -20.74462 -18.08119 -17.05104 -16.54336 -16.06812 -15.77496 -14.71003 -14.52559 -14.15072 -13.63576 -13.46987 -13.42243 -13.09154 -12.77033 -12.15051 -12.03102 -11.96943 -11.29496 -11.09381 -10.92464 -10.89643 -10.66808 -10.58251 -10.55253 -10.02958 -9.66297 -8.92667 -8.80782 -8.05997 -6.85422 -5.70677 -2.98835 1.17886 1.19731 2.13577 3.25610 3.47623 3.52107 3.54162 3.56207 4.57979 4.66274 4.69289 4.95935 5.06643 5.09638 5.21044 5.41337 5.46494 5.58368 5.68743 5.76201 5.99974 6.05287 6.11071 6.24815 6.36550 6.40293 6.60821 6.93140 6.99168 7.32815 7.75730 8.48463 9.59368 10.17907 10.53183 11.52507 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.023305 B = 0.004719 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.191901 B = 5931.746457 C = 6749.891711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.300 6.300 3 C 0.137 3.863 4 C -0.199 4.199 5 C -0.081 4.081 6 C -0.070 4.070 7 Cl -0.079 7.079 8 C -0.070 4.070 9 C -0.083 4.083 10 C -0.082 4.082 11 C 0.163 3.837 12 N -0.733 5.733 13 C -0.236 4.236 14 H 0.070 0.930 15 C -0.015 4.015 16 N -0.935 5.935 17 Si 0.907 3.093 18 H -0.290 1.290 19 H -0.291 1.291 20 H -0.282 1.282 21 H 0.101 0.899 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.135 0.865 25 H 0.131 0.869 26 H 0.141 0.859 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.022 0.978 30 H 0.017 0.983 31 H 0.384 0.616 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.544 15.590 5.596 20.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.213 6.213 3 C 0.091 3.909 4 C -0.218 4.218 5 C -0.100 4.100 6 C -0.097 4.097 7 Cl -0.051 7.051 8 C -0.088 4.088 9 C -0.085 4.085 10 C -0.120 4.120 11 C 0.035 3.965 12 N -0.377 5.377 13 C -0.367 4.367 14 H 0.088 0.912 15 C -0.211 4.211 16 N -0.584 5.584 17 Si 0.738 3.262 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.208 1.208 21 H 0.120 0.880 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.152 0.848 25 H 0.149 0.851 26 H 0.158 0.842 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.039 0.961 30 H 0.035 0.965 31 H 0.217 0.783 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.396 15.477 5.413 20.555 hybrid contribution 0.111 -0.287 -0.625 0.696 sum -12.286 15.190 4.789 20.115 Atomic orbital electron populations 1.23092 0.78605 1.04234 1.00995 1.86230 1.21051 1.26075 1.87916 1.18963 0.91904 0.84477 0.95558 1.21124 1.00144 0.91559 1.08981 1.20712 0.92305 0.97842 0.99118 1.20716 0.92741 0.86439 1.09790 1.98349 1.80826 1.28613 1.97266 1.20854 1.00541 0.89403 0.98041 1.19306 0.90659 0.95791 1.02739 1.20676 0.98518 0.92901 0.99902 1.20560 0.94641 0.89225 0.92048 1.42348 1.62292 1.26003 1.07073 1.19238 1.26532 1.04425 0.86551 0.91243 1.24730 1.01045 0.98463 0.96853 1.69665 1.41217 1.23334 1.24155 0.86187 0.78145 0.78839 0.83031 1.21740 1.21785 1.20798 0.88019 0.92830 0.92655 0.84771 0.85075 0.84157 0.90788 0.90195 0.96056 0.96475 0.78287 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.30 -4.29 9.63 -19.51 -0.19 -4.48 16 3 C 0.14 1.92 6.66 -39.22 -0.26 1.66 16 4 C -0.20 -2.26 9.04 -39.44 -0.36 -2.62 16 5 C -0.08 -0.90 9.82 -39.57 -0.39 -1.29 16 6 C -0.07 -0.87 6.32 -39.49 -0.25 -1.12 16 7 Cl -0.08 -0.91 28.95 -51.86 -1.50 -2.41 16 8 C -0.07 -0.96 9.46 -39.57 -0.37 -1.33 16 9 C -0.08 -1.26 5.15 -104.48 -0.54 -1.80 16 10 C -0.08 -1.44 5.18 -27.89 -0.14 -1.59 16 11 C 0.16 3.50 6.24 -4.04 -0.03 3.48 16 12 N -0.73 -19.42 5.60 -59.91 -0.34 -19.76 16 13 C -0.24 -6.85 9.99 -15.06 -0.15 -7.01 16 14 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 15 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 16 N -0.93 -28.87 13.06 55.49 0.72 -28.14 16 17 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.05 0.40 7.67 -51.93 -0.40 0.00 16 23 H 0.05 0.45 7.65 -51.93 -0.40 0.05 16 24 H 0.13 1.15 6.30 -52.49 -0.33 0.82 16 25 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 26 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 27 H 0.07 1.24 8.05 -51.93 -0.42 0.83 16 28 H 0.08 1.44 7.69 -51.93 -0.40 1.05 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.38 10.55 7.67 -40.82 -0.31 10.24 16 32 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 293.00 15.07 4.42 4.42 Total: -1.00 -32.09 293.00 -7.42 -39.51 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -3.92 Total: 3.96 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -1.59 Total: -10.93 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.39 Total: -47.90 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.19 Total: -4.48 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.41 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.09 -7.42 -39.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258849970.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.842 kcal (2) G-P(sol) polarization free energy of solvation -32.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.17 seconds