Wall clock time and date at job start Mon Mar 30 2020 06:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35928 * 116.99822 * 2 1 4 4 C 1.38742 * 120.03887 * 359.72505 * 3 2 1 5 5 C 1.38127 * 119.94938 * 179.76536 * 4 3 2 6 6 C 1.38382 * 120.04682 * 0.51283 * 5 4 3 7 7 Cl 1.73601 * 119.95948 * 179.76252 * 6 5 4 8 8 C 1.38349 * 120.08305 * 359.74225 * 6 5 4 9 9 C 1.38160 * 120.04293 * 0.02562 * 8 6 5 10 10 C 1.50697 * 120.02101 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.47399 * 265.01859 * 10 9 8 12 12 N 1.46499 * 109.47548 * 179.97438 * 11 10 9 13 13 C 1.36930 * 120.00180 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00294 * 0.02562 * 13 12 11 15 15 C 1.38817 * 120.00048 * 180.02562 * 13 12 11 16 16 N 1.31616 * 119.99687 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99807 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47317 * 90.00068 * 17 15 13 19 19 H 1.48507 * 109.46890 * 209.99712 * 17 15 13 20 20 H 1.48498 * 109.47439 * 329.99895 * 17 15 13 21 21 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47054 * 299.99733 * 1 2 3 23 23 H 1.09000 * 109.47187 * 59.99789 * 1 2 3 24 24 H 1.07991 * 120.02758 * 0.02562 * 4 3 2 25 25 H 1.08005 * 119.97727 * 180.22934 * 5 4 3 26 26 H 1.07998 * 119.97861 * 180.02562 * 8 6 5 27 27 H 1.09000 * 109.47579 * 25.02658 * 10 9 8 28 28 H 1.09007 * 109.47100 * 145.02180 * 10 9 8 29 29 H 1.09002 * 109.47561 * 300.00380 * 11 10 9 30 30 H 1.09007 * 109.46733 * 60.00096 * 11 10 9 31 31 H 0.97002 * 119.99708 * 0.02562 * 12 11 10 32 32 H 0.97002 * 119.99577 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2912 2.3752 -0.0058 5 6 1.9202 3.6050 -0.0009 6 6 3.3021 3.6764 -0.0009 7 17 4.0903 5.2233 -0.0010 8 6 4.0565 2.5167 -0.0005 9 6 3.4312 1.2848 -0.0006 10 6 4.2534 0.0218 -0.0007 11 6 4.4266 -0.4738 -1.4377 12 7 5.2264 -1.7012 -1.4380 13 6 5.5133 -2.3313 -2.6194 14 1 5.1503 -1.9232 -3.5511 15 6 6.2707 -3.4946 -2.6195 16 7 6.7135 -3.9917 -1.4841 17 14 6.6626 -4.3538 -4.2313 18 1 7.9353 -3.8204 -4.7799 19 1 6.7991 -5.8133 -3.9937 20 1 5.5650 -4.1107 -5.2015 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.2128 2.3199 -0.0098 25 1 1.3330 4.5114 -0.0016 26 1 5.1350 2.5745 -0.0001 27 1 5.2320 0.2253 0.4340 28 1 3.7459 -0.7421 0.5884 29 1 3.4480 -0.6774 -1.8724 30 1 4.9340 0.2902 -2.0269 31 1 5.5522 -2.0680 -0.6011 32 1 7.2431 -4.8044 -1.4842 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258849970.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:50 Heat of formation + Delta-G solvation = -35.510700 kcal Electronic energy + Delta-G solvation = -16133.695591 eV Core-core repulsion = 13312.721168 eV Total energy + Delta-G solvation = -2820.974423 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.31914 -38.68122 -37.40768 -36.80021 -34.51292 -32.50990 -30.98653 -29.26518 -28.04417 -25.88552 -23.65266 -23.19857 -22.11104 -19.33483 -18.84889 -17.56049 -17.14514 -16.77156 -16.53552 -15.57702 -15.37872 -15.35750 -15.18564 -14.70662 -14.27924 -14.03174 -13.33130 -13.04932 -13.02154 -12.82492 -12.80984 -12.47681 -12.24458 -12.09401 -12.08829 -11.87346 -11.58852 -11.54357 -10.94484 -9.95775 -9.06051 -9.02241 -7.95528 -5.25447 0.19735 0.21266 1.19498 1.47149 1.49759 1.58311 2.38453 2.53018 2.59649 3.37758 3.58648 3.76641 4.00088 4.11114 4.29270 4.33317 4.42443 4.43879 4.46224 4.52209 4.73043 4.76346 4.93600 4.95376 5.13334 5.20272 5.28163 5.40947 5.47637 5.63308 6.26357 6.41706 7.32429 8.06445 8.32127 9.28217 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.023305 B = 0.004719 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.191901 B = 5931.746457 C = 6749.891711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.332 6.332 3 C 0.127 3.873 4 C -0.190 4.190 5 C -0.070 4.070 6 C -0.078 4.078 7 Cl -0.071 7.071 8 C -0.075 4.075 9 C -0.111 4.111 10 C -0.066 4.066 11 C 0.167 3.833 12 N -0.746 5.746 13 C -0.250 4.250 14 H 0.073 0.927 15 C -0.074 4.074 16 N -0.970 5.970 17 Si 0.977 3.023 18 H -0.285 1.285 19 H -0.292 1.292 20 H -0.270 1.270 21 H 0.109 0.891 22 H 0.075 0.925 23 H 0.069 0.931 24 H 0.167 0.833 25 H 0.162 0.838 26 H 0.140 0.860 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.014 0.986 30 H 0.016 0.984 31 H 0.375 0.625 32 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.069 16.990 5.032 22.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.246 6.246 3 C 0.081 3.919 4 C -0.209 4.209 5 C -0.089 4.089 6 C -0.105 4.105 7 Cl -0.042 7.042 8 C -0.094 4.094 9 C -0.112 4.112 10 C -0.103 4.103 11 C 0.041 3.959 12 N -0.389 5.389 13 C -0.382 4.382 14 H 0.091 0.909 15 C -0.266 4.266 16 N -0.620 5.620 17 Si 0.805 3.195 18 H -0.212 1.212 19 H -0.218 1.218 20 H -0.195 1.195 21 H 0.127 0.873 22 H 0.094 0.906 23 H 0.088 0.912 24 H 0.184 0.816 25 H 0.179 0.821 26 H 0.158 0.842 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.032 0.968 30 H 0.034 0.966 31 H 0.206 0.794 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.950 16.913 4.842 22.452 hybrid contribution 0.501 -0.635 -0.425 0.914 sum -13.448 16.278 4.417 21.572 Atomic orbital electron populations 1.23395 0.76283 1.05440 1.02719 1.86186 1.23649 1.26720 1.88016 1.19133 0.91698 0.85414 0.95670 1.21443 1.01605 0.90468 1.07390 1.21102 0.91880 0.98953 0.96951 1.20818 0.93448 0.86360 1.09879 1.98352 1.80860 1.27770 1.97232 1.20873 1.00776 0.89581 0.98159 1.19120 0.91340 0.94922 1.05831 1.20382 0.99043 0.94054 0.96856 1.20615 0.93128 0.87323 0.94856 1.42563 1.62839 1.27388 1.06074 1.19631 1.26257 1.04772 0.87497 0.90909 1.25603 1.01270 0.99333 1.00397 1.69825 1.42095 1.23722 1.26371 0.85098 0.78161 0.77228 0.79016 1.21171 1.21841 1.19466 0.87307 0.90644 0.91227 0.81569 0.82074 0.84214 0.90774 0.91359 0.96834 0.96573 0.79356 0.93855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.33 -9.28 9.63 -92.74 -0.89 -10.17 16 3 C 0.13 3.42 6.66 22.50 0.15 3.57 16 4 C -0.19 -3.76 9.04 22.36 0.20 -3.56 16 5 C -0.07 -1.34 9.82 22.28 0.22 -1.12 16 6 C -0.08 -1.80 6.32 22.33 0.14 -1.66 16 7 Cl -0.07 -1.49 28.95 -2.72 -0.08 -1.57 16 8 C -0.08 -2.02 9.46 22.28 0.21 -1.81 16 9 C -0.11 -3.34 5.15 -19.77 -0.10 -3.44 16 10 C -0.07 -2.37 5.18 29.85 0.15 -2.21 16 11 C 0.17 7.37 6.24 86.38 0.54 7.91 16 12 N -0.75 -40.51 5.60 -343.45 -1.92 -42.43 16 13 C -0.25 -14.67 9.99 84.04 0.84 -13.83 16 14 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 15 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 16 N -0.97 -60.84 13.06 21.65 0.28 -60.56 16 17 Si 0.98 47.14 29.55 68.60 2.03 49.17 16 18 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 19 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 21 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.08 0.91 7.67 -2.38 -0.02 0.89 16 23 H 0.07 0.95 7.65 -2.39 -0.02 0.93 16 24 H 0.17 2.14 6.30 -2.92 -0.02 2.12 16 25 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 26 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 27 H 0.07 2.59 8.05 -2.39 -0.02 2.57 16 28 H 0.07 2.57 7.69 -2.38 -0.02 2.56 16 29 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.37 21.33 7.67 -92.71 -0.71 20.62 16 32 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -68.87 293.00 3.77 -65.10 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.42 Total: 19.16 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: 3.93 Total: -18.70 kcal Atomic # 7 Polarization: -101.35 SS G_CDS: -1.64 Total: -102.99 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -0.89 Total: -10.17 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.08 Total: -1.57 kcal Total: -68.87 3.77 -65.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258849970.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.589 kcal (2) G-P(sol) polarization free energy of solvation -68.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds