Wall clock time and date at job start Mon Mar 30 2020 06:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 110.99531 * 2 1 4 4 H 1.08998 * 109.47678 * 323.58985 * 3 2 1 5 5 C 1.50700 * 109.46980 * 203.58278 * 3 2 1 6 6 H 1.08002 * 119.99387 * 240.00481 * 5 3 2 7 7 C 1.37871 * 120.00229 * 59.72922 * 5 3 2 8 8 N 1.31514 * 119.99688 * 0.27591 * 7 5 3 9 9 Si 1.86798 * 120.00320 * 180.27483 * 7 5 3 10 10 H 1.48498 * 109.46818 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47366 * 119.99884 * 9 7 5 12 12 H 1.48503 * 109.47181 * 240.00285 * 9 7 5 13 13 C 1.50702 * 109.46680 * 83.58572 * 3 2 1 14 14 C 1.38276 * 119.93976 * 46.14234 * 13 3 2 15 15 C 1.38157 * 120.07684 * 179.76747 * 14 13 3 16 16 C 1.38710 * 119.95372 * 0.51054 * 15 14 13 17 17 O 1.35927 * 120.05707 * 179.77202 * 16 15 14 18 18 C 1.42889 * 117.00287 * 359.97135 * 17 16 15 19 19 C 1.38815 * 119.88247 * 359.74355 * 16 15 14 20 20 Cl 1.73597 * 120.03941 * 180.02562 * 19 16 15 21 21 C 1.38246 * 119.94164 * 226.41926 * 13 3 2 22 22 H 1.08998 * 109.47274 * 304.61674 * 1 2 3 23 23 H 1.08997 * 109.47509 * 64.62737 * 1 2 3 24 24 H 1.09007 * 109.46672 * 184.62040 * 1 2 3 25 25 H 1.00896 * 110.99929 * 123.95906 * 2 1 3 26 26 H 0.96999 * 120.00202 * 180.02562 * 8 7 5 27 27 H 1.07998 * 119.96490 * 0.02562 * 14 13 3 28 28 H 1.07997 * 120.02625 * 180.25867 * 15 14 13 29 29 H 1.08998 * 109.47773 * 180.02562 * 18 17 16 30 30 H 1.08999 * 109.47599 * 300.00677 * 18 17 16 31 31 H 1.09008 * 109.47301 * 60.00512 * 18 17 16 32 32 H 1.07996 * 119.97769 * 0.02562 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3535 2.0071 -0.6099 5 6 3.3910 1.3739 -0.5684 6 1 4.2183 1.7214 0.0327 7 6 3.6127 0.9272 -1.8538 8 7 2.6053 0.5040 -2.5857 9 14 5.3438 0.9229 -2.5557 10 1 6.2916 1.4444 -1.5384 11 1 5.7254 -0.4642 -2.9235 12 1 5.3904 1.7859 -3.7634 13 6 2.0271 1.8973 1.4120 14 6 2.5339 1.1107 2.4300 15 6 2.5688 1.5917 3.7247 16 6 2.0851 2.8611 4.0052 17 8 2.1141 3.3346 5.2790 18 6 2.6561 2.4709 6.2800 19 6 1.5718 3.6472 2.9827 20 17 0.9660 5.2367 3.3290 21 6 1.5442 3.1629 1.6880 22 1 -0.3634 0.5838 0.8457 23 1 -0.3634 0.4403 -0.9285 24 1 -0.3633 -1.0244 0.0828 25 1 1.8306 -0.5262 0.7813 26 1 2.7612 0.1893 -3.4899 27 1 2.9068 0.1208 2.2123 28 1 2.9687 0.9782 4.5185 29 1 2.6196 2.9694 7.2487 30 1 2.0715 1.5520 6.3224 31 1 3.6906 2.2323 6.0327 32 1 1.1444 3.7734 0.8920 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259240699.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:41 Heat of formation + Delta-G solvation = -31.937707 kcal Electronic energy + Delta-G solvation = -16684.817401 eV Core-core repulsion = 13863.997914 eV Total energy + Delta-G solvation = -2820.819487 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.18451 -39.06295 -37.53657 -36.34418 -34.03029 -31.85565 -31.48278 -28.96882 -27.69160 -25.56648 -24.41340 -23.27806 -21.67980 -19.22100 -18.55196 -17.38812 -16.99564 -16.69409 -16.29540 -15.95915 -15.29347 -14.93949 -14.84481 -14.38546 -14.14876 -13.99321 -13.60197 -13.18317 -12.85895 -12.80903 -12.52458 -12.44446 -12.38561 -12.04149 -11.93788 -11.84104 -11.50551 -11.07906 -10.49122 -9.83193 -9.02729 -8.66170 -7.93345 -6.13438 0.19981 0.40758 1.18880 1.45029 1.48183 1.57716 2.30689 2.48874 2.71744 3.27828 3.80969 3.93787 4.12798 4.23365 4.38268 4.43672 4.45300 4.52754 4.66911 4.75931 4.78597 4.79639 5.11189 5.13040 5.21223 5.30115 5.68102 5.73807 5.84557 6.23872 6.35456 6.65731 6.99822 7.19893 7.58221 9.09796 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.023609 B = 0.006056 C = 0.006013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.701886 B = 4622.579104 C = 4655.121449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.668 5.668 3 C 0.263 3.737 4 H 0.009 0.991 5 C -0.533 4.533 6 H 0.048 0.952 7 C 0.039 3.961 8 N -0.881 5.881 9 Si 0.945 3.055 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.284 1.284 13 C -0.112 4.112 14 C -0.076 4.076 15 C -0.185 4.185 16 C 0.116 3.884 17 O -0.324 6.324 18 C 0.016 3.984 19 C -0.077 4.077 20 Cl -0.066 7.066 21 C -0.087 4.087 22 H 0.006 0.994 23 H 0.037 0.963 24 H 0.066 0.934 25 H 0.323 0.677 26 H 0.255 0.745 27 H 0.136 0.864 28 H 0.166 0.834 29 H 0.122 0.878 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.303 1.940 15.372 15.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.297 5.297 3 C 0.155 3.845 4 H 0.027 0.973 5 C -0.572 4.572 6 H 0.066 0.934 7 C -0.164 4.164 8 N -0.517 5.517 9 Si 0.771 3.229 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.211 1.211 13 C -0.115 4.115 14 C -0.095 4.095 15 C -0.203 4.203 16 C 0.069 3.931 17 O -0.238 6.238 18 C -0.078 4.078 19 C -0.104 4.104 20 Cl -0.038 7.038 21 C -0.106 4.106 22 H 0.025 0.975 23 H 0.055 0.945 24 H 0.085 0.915 25 H 0.141 0.859 26 H 0.064 0.936 27 H 0.153 0.847 28 H 0.183 0.817 29 H 0.140 0.860 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.446 2.106 14.618 14.839 hybrid contribution 0.573 0.275 0.080 0.641 sum -0.873 2.381 14.698 14.915 Atomic orbital electron populations 1.22007 0.90024 1.00311 0.98324 1.60794 1.05431 1.15486 1.48015 1.17965 0.94794 0.85955 0.85833 0.97282 1.21172 0.92906 1.44496 0.98629 0.93421 1.25585 0.99399 0.94165 0.97259 1.70190 1.31629 1.41188 1.08733 0.85745 0.81476 0.77467 0.78205 1.19530 1.20745 1.21063 1.21146 0.97528 0.94116 0.98702 1.20998 0.96592 1.00337 0.91574 1.21400 1.05527 0.94986 0.98432 1.18634 0.97412 0.92525 0.84503 1.86101 1.79074 1.44560 1.14053 1.23397 0.98872 0.95343 0.90158 1.20232 1.08197 0.88669 0.93292 1.98313 1.86572 1.23490 1.95383 1.20850 0.99746 0.96039 0.93990 0.97532 0.94456 0.91533 0.85901 0.93626 0.84657 0.81688 0.85987 0.91415 0.91676 0.85563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.73 10.49 127.69 1.34 3.07 16 2 N -0.67 -30.39 5.88 -522.46 -3.07 -33.47 16 3 C 0.26 12.74 2.08 43.42 0.09 12.83 16 4 H 0.01 0.50 7.67 -2.39 -0.02 0.49 16 5 C -0.53 -28.64 8.67 25.60 0.22 -28.42 16 6 H 0.05 2.57 7.74 -2.91 -0.02 2.55 16 7 C 0.04 2.15 5.39 84.65 0.46 2.61 16 8 N -0.88 -50.64 12.76 21.44 0.27 -50.37 16 9 Si 0.94 43.31 29.54 68.60 2.03 45.33 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 13 C -0.11 -4.57 4.52 -19.85 -0.09 -4.66 16 14 C -0.08 -2.64 8.97 22.26 0.20 -2.44 16 15 C -0.18 -5.29 9.04 22.36 0.20 -5.09 16 16 C 0.12 3.57 6.68 22.52 0.15 3.72 16 17 O -0.32 -8.63 9.96 -92.72 -0.92 -9.55 16 18 C 0.02 0.26 9.81 113.37 1.11 1.38 16 19 C -0.08 -2.65 6.33 22.41 0.14 -2.51 16 20 Cl -0.07 -2.07 28.50 -2.72 -0.08 -2.15 16 21 C -0.09 -3.34 9.44 22.28 0.21 -3.13 16 22 H 0.01 0.24 7.87 -2.39 -0.02 0.22 16 23 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 25 H 0.32 13.26 6.76 -89.70 -0.61 12.66 16 26 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 27 H 0.14 4.47 6.85 -2.91 -0.02 4.45 16 28 H 0.17 3.42 6.30 -2.91 -0.02 3.40 16 29 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 0.93 7.66 -2.39 -0.02 0.91 16 31 H 0.06 0.94 7.66 -2.38 -0.02 0.92 16 32 H 0.13 4.88 7.99 -2.91 -0.02 4.86 16 Total: -1.00 -62.39 288.63 2.79 -59.60 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.53 Total: 13.26 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 4.03 Total: -22.65 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -2.80 Total: -83.83 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -0.92 Total: -9.55 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -0.08 Total: -2.15 kcal Total: -62.39 2.79 -59.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259240699.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.662 kcal (2) G-P(sol) polarization free energy of solvation -62.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds