Wall clock time and date at job start Mon Mar 30 2020 06:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35923 * 117.00086 * 2 1 4 4 C 1.38703 * 120.05677 * 359.97438 * 3 2 1 5 5 C 1.38151 * 119.95500 * 180.02562 * 4 3 2 6 6 C 1.38282 * 120.07583 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.93728 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47161 * 20.00093 * 7 6 5 9 9 N 1.46902 * 109.46577 * 139.99955 * 7 6 5 10 10 C 1.52997 * 109.47103 * 260.00059 * 7 6 5 11 11 C 1.50705 * 109.47112 * 175.00403 * 10 7 6 12 12 H 1.07993 * 119.99645 * 359.97438 * 11 10 7 13 13 C 1.37876 * 120.00027 * 179.97438 * 11 10 7 14 14 N 1.31516 * 120.00148 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00045 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47020 * 89.99907 * 15 13 11 17 17 H 1.48496 * 109.47420 * 210.00357 * 15 13 11 18 18 H 1.48507 * 109.47042 * 330.00579 * 15 13 11 19 19 C 1.38242 * 120.11910 * 0.27216 * 6 5 4 20 20 C 1.38252 * 120.04493 * 359.49458 * 19 6 5 21 21 Cl 1.73602 * 120.04260 * 180.27576 * 20 19 6 22 22 H 1.08999 * 109.46916 * 299.99385 * 1 2 3 23 23 H 1.08995 * 109.47030 * 60.00176 * 1 2 3 24 24 H 1.09000 * 109.47035 * 180.02562 * 1 2 3 25 25 H 1.08000 * 120.02701 * 0.05050 * 4 3 2 26 26 H 1.07997 * 119.96400 * 180.02562 * 5 4 3 27 27 H 1.00893 * 111.00154 * 296.04385 * 9 7 6 28 28 H 1.00903 * 110.99827 * 60.00558 * 9 7 6 29 29 H 1.09001 * 109.47096 * 295.00164 * 10 7 6 30 30 H 1.08994 * 109.47510 * 55.00027 * 10 7 6 31 31 H 0.96992 * 120.00329 * 179.97438 * 14 13 11 32 32 H 1.08007 * 119.97500 * 179.74102 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2918 2.3751 -0.0005 5 6 1.9212 3.6049 -0.0011 6 6 3.3022 3.6766 -0.0005 7 6 3.9855 5.0199 -0.0017 8 1 3.2894 5.7820 0.3486 9 7 5.1528 4.9761 0.8892 10 6 4.4406 5.3593 -1.4224 11 6 5.0134 6.7530 -1.4470 12 1 5.0487 7.3383 -0.5400 13 6 5.4921 7.2809 -2.6273 14 7 5.4495 6.5680 -3.7316 15 14 6.2013 9.0088 -2.6578 16 1 7.6593 8.9503 -2.3816 17 1 5.9746 9.6134 -3.9950 18 1 5.5339 9.8362 -1.6208 19 6 4.0570 2.5185 -0.0051 20 6 3.4323 1.2851 0.0003 21 17 4.3802 -0.1692 0.0017 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.2132 2.3202 -0.0001 26 1 1.3341 4.5113 -0.0011 27 1 4.8722 4.8173 1.8452 28 1 5.8135 4.2767 0.5853 29 1 5.2029 4.6476 -1.7395 30 1 3.5885 5.3046 -2.0998 31 1 5.7859 6.9395 -4.5620 32 1 5.1354 2.5772 -0.0089 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259276988.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:59 Heat of formation + Delta-G solvation = -27.147311 kcal Electronic energy + Delta-G solvation = -16326.856997 eV Core-core repulsion = 13506.245238 eV Total energy + Delta-G solvation = -2820.611759 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.18564 -38.01751 -36.36915 -34.80328 -32.39214 -30.83155 -29.43537 -28.30816 -27.32570 -24.18860 -22.62671 -21.98695 -19.73963 -18.26110 -16.55723 -16.32212 -15.85795 -15.44871 -15.11361 -14.46167 -14.34834 -13.96181 -13.73184 -13.25074 -12.83191 -12.39558 -12.14558 -11.80894 -11.51312 -11.28871 -11.12269 -11.01799 -10.80759 -10.67422 -10.47679 -10.21700 -9.52298 -9.09429 -8.74703 -8.29776 -8.04559 -7.83151 -5.91007 -3.90198 1.27829 1.45003 2.30331 3.16747 3.39171 3.44969 3.48812 3.75034 4.54641 4.76270 4.85486 5.00566 5.10055 5.24311 5.29768 5.34510 5.44514 5.47768 5.64590 5.75462 6.14689 6.21183 6.32702 6.63729 6.75261 6.86160 7.26519 7.53022 7.69815 7.96433 8.08831 8.15705 8.52070 9.16061 9.71986 11.20690 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.031615 B = 0.004901 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.443207 B = 5711.482450 C = 5986.302486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.310 6.310 3 C 0.118 3.882 4 C -0.195 4.195 5 C -0.072 4.072 6 C -0.120 4.120 7 C 0.135 3.865 8 H 0.080 0.920 9 N -0.821 5.821 10 C 0.036 3.964 11 C -0.495 4.495 12 H 0.063 0.937 13 C 0.051 3.949 14 N -0.902 5.902 15 Si 0.893 3.107 16 H -0.282 1.282 17 H -0.290 1.290 18 H -0.275 1.275 19 C -0.073 4.073 20 C -0.062 4.062 21 Cl -0.068 7.068 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.098 0.902 25 H 0.132 0.868 26 H 0.131 0.869 27 H 0.323 0.677 28 H 0.334 0.666 29 H 0.017 0.983 30 H 0.020 0.980 31 H 0.258 0.742 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.183 -12.105 8.837 17.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.223 6.223 3 C 0.073 3.927 4 C -0.214 4.214 5 C -0.091 4.091 6 C -0.123 4.123 7 C 0.024 3.976 8 H 0.098 0.902 9 N -0.348 5.348 10 C -0.001 4.001 11 C -0.533 4.533 12 H 0.081 0.919 13 C -0.149 4.149 14 N -0.543 5.543 15 Si 0.721 3.279 16 H -0.208 1.208 17 H -0.216 1.216 18 H -0.200 1.200 19 C -0.092 4.092 20 C -0.090 4.090 21 Cl -0.039 7.039 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.117 0.883 25 H 0.150 0.850 26 H 0.149 0.851 27 H 0.134 0.866 28 H 0.148 0.852 29 H 0.035 0.965 30 H 0.038 0.962 31 H 0.068 0.932 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.829 -11.644 8.419 16.865 hybrid contribution -0.104 -0.140 -0.067 0.187 sum -8.933 -11.784 8.352 16.983 Atomic orbital electron populations 1.23047 0.78520 1.03802 1.01378 1.86122 1.21164 1.26200 1.88841 1.18589 0.90420 0.84956 0.98782 1.21155 0.99835 0.91780 1.08670 1.21010 0.94307 0.97088 0.96647 1.21352 0.94033 0.97850 0.99016 1.20804 0.90412 0.88600 0.97816 0.90172 1.58847 1.15142 1.56561 1.04265 1.19157 0.96402 0.97222 0.87358 1.21150 1.38661 0.99117 0.94416 0.91911 1.25021 0.96446 0.97628 0.95791 1.69971 1.47724 1.37075 0.99480 0.86580 0.79463 0.84879 0.76930 1.20840 1.21597 1.19970 1.20745 1.00657 0.89324 0.98477 1.20113 0.88531 0.88442 1.11871 1.98340 1.71817 1.36533 1.97199 0.92720 0.92559 0.88321 0.84994 0.85081 0.86634 0.85236 0.96458 0.96166 0.93227 0.84586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.10 9.96 -19.50 -0.19 -4.29 16 3 C 0.12 1.73 6.68 -39.19 -0.26 1.47 16 4 C -0.20 -2.62 9.04 -39.44 -0.36 -2.98 16 5 C -0.07 -1.07 9.66 -39.60 -0.38 -1.45 16 6 C -0.12 -2.02 4.95 -104.60 -0.52 -2.53 16 7 C 0.14 2.62 2.93 -68.86 -0.20 2.42 16 8 H 0.08 1.55 8.00 -51.93 -0.42 1.14 16 9 N -0.82 -14.66 8.78 -5.65 -0.05 -14.71 16 10 C 0.04 0.89 4.60 -27.88 -0.13 0.77 16 11 C -0.49 -13.76 8.84 -34.44 -0.30 -14.06 16 12 H 0.06 1.74 7.74 -52.49 -0.41 1.33 16 13 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 14 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 15 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 C -0.07 -1.19 9.07 -39.57 -0.36 -1.55 16 20 C -0.06 -0.98 6.33 -39.36 -0.25 -1.23 16 21 Cl -0.07 -0.99 28.51 -51.86 -1.48 -2.47 16 22 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 23 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 24 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.13 1.37 6.30 -52.49 -0.33 1.04 16 26 H 0.13 1.75 8.03 -52.49 -0.42 1.32 16 27 H 0.32 4.83 9.06 -39.30 -0.36 4.47 16 28 H 0.33 5.75 7.35 -39.29 -0.29 5.46 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.14 2.15 6.67 -52.48 -0.35 1.80 16 LS Contribution 289.95 15.07 4.37 4.37 Total: -1.00 -31.24 289.95 -7.27 -38.51 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -3.77 Total: 4.65 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -1.87 Total: -16.55 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 0.69 Total: -41.15 kcal Atomic # 8 Polarization: -4.10 SS G_CDS: -0.19 Total: -4.29 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.48 Total: -2.47 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.24 -7.27 -38.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259276988.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.358 kcal (2) G-P(sol) polarization free energy of solvation -31.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds