Wall clock time and date at job start Mon Mar 30 2020 06:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35923 * 117.00086 * 2 1 4 4 C 1.38703 * 120.05677 * 359.97438 * 3 2 1 5 5 C 1.38151 * 119.95500 * 180.02562 * 4 3 2 6 6 C 1.38282 * 120.07583 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.93728 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47161 * 20.00093 * 7 6 5 9 9 N 1.46902 * 109.46577 * 139.99955 * 7 6 5 10 10 C 1.52997 * 109.47103 * 260.00059 * 7 6 5 11 11 C 1.50705 * 109.47112 * 175.00403 * 10 7 6 12 12 H 1.07993 * 119.99645 * 359.97438 * 11 10 7 13 13 C 1.37876 * 120.00027 * 179.97438 * 11 10 7 14 14 N 1.31516 * 120.00148 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00045 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47020 * 89.99907 * 15 13 11 17 17 H 1.48496 * 109.47420 * 210.00357 * 15 13 11 18 18 H 1.48507 * 109.47042 * 330.00579 * 15 13 11 19 19 C 1.38242 * 120.11910 * 0.27216 * 6 5 4 20 20 C 1.38252 * 120.04493 * 359.49458 * 19 6 5 21 21 Cl 1.73602 * 120.04260 * 180.27576 * 20 19 6 22 22 H 1.08999 * 109.46916 * 299.99385 * 1 2 3 23 23 H 1.08995 * 109.47030 * 60.00176 * 1 2 3 24 24 H 1.09000 * 109.47035 * 180.02562 * 1 2 3 25 25 H 1.08000 * 120.02701 * 0.05050 * 4 3 2 26 26 H 1.07997 * 119.96400 * 180.02562 * 5 4 3 27 27 H 1.00893 * 111.00154 * 296.04385 * 9 7 6 28 28 H 1.00903 * 110.99827 * 60.00558 * 9 7 6 29 29 H 1.09001 * 109.47096 * 295.00164 * 10 7 6 30 30 H 1.08994 * 109.47510 * 55.00027 * 10 7 6 31 31 H 0.96992 * 120.00329 * 179.97438 * 14 13 11 32 32 H 1.08007 * 119.97500 * 179.74102 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2918 2.3751 -0.0005 5 6 1.9212 3.6049 -0.0011 6 6 3.3022 3.6766 -0.0005 7 6 3.9855 5.0199 -0.0017 8 1 3.2894 5.7820 0.3486 9 7 5.1528 4.9761 0.8892 10 6 4.4406 5.3593 -1.4224 11 6 5.0134 6.7530 -1.4470 12 1 5.0487 7.3383 -0.5400 13 6 5.4921 7.2809 -2.6273 14 7 5.4495 6.5680 -3.7316 15 14 6.2013 9.0088 -2.6578 16 1 7.6593 8.9503 -2.3816 17 1 5.9746 9.6134 -3.9950 18 1 5.5339 9.8362 -1.6208 19 6 4.0570 2.5185 -0.0051 20 6 3.4323 1.2851 0.0003 21 17 4.3802 -0.1692 0.0017 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.2132 2.3202 -0.0001 26 1 1.3341 4.5113 -0.0011 27 1 4.8722 4.8173 1.8452 28 1 5.8135 4.2767 0.5853 29 1 5.2029 4.6476 -1.7395 30 1 3.5885 5.3046 -2.0998 31 1 5.7859 6.9395 -4.5620 32 1 5.1354 2.5772 -0.0089 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259276988.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:59 Heat of formation + Delta-G solvation = -47.803816 kcal Electronic energy + Delta-G solvation = -16327.752730 eV Core-core repulsion = 13506.245238 eV Total energy + Delta-G solvation = -2821.507493 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.28294 -39.18257 -37.55532 -36.29370 -34.42264 -31.97942 -30.61614 -30.15946 -28.26363 -25.95509 -23.80065 -23.48653 -21.22387 -19.29934 -18.48013 -17.54275 -16.83490 -16.76731 -16.65346 -16.23692 -15.68517 -15.05705 -14.90631 -14.44821 -14.29865 -14.13091 -13.47226 -13.11492 -12.96149 -12.72519 -12.61836 -12.43238 -12.27610 -12.09082 -11.94776 -11.85144 -11.26611 -11.19016 -10.49554 -9.92672 -9.46969 -9.05018 -8.09683 -6.16082 0.11508 0.26716 1.13979 1.44512 1.45780 1.56503 2.24798 2.47756 2.57777 3.23771 3.71399 3.82308 3.93743 4.02668 4.24902 4.38890 4.41196 4.43064 4.52675 4.74392 4.78647 4.97907 4.99766 5.15753 5.45949 5.49798 5.59354 5.73517 5.89151 6.27873 6.31581 6.51657 6.82752 6.98761 7.50803 9.02058 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.031615 B = 0.004901 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.443207 B = 5711.482450 C = 5986.302486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.122 3.878 4 C -0.187 4.187 5 C -0.073 4.073 6 C -0.139 4.139 7 C 0.151 3.849 8 H 0.081 0.919 9 N -0.829 5.829 10 C 0.043 3.957 11 C -0.505 4.505 12 H 0.063 0.937 13 C -0.006 4.006 14 N -0.940 5.940 15 Si 0.960 3.040 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.263 1.263 19 C -0.079 4.079 20 C -0.080 4.080 21 Cl -0.065 7.065 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.121 0.879 25 H 0.168 0.832 26 H 0.147 0.853 27 H 0.342 0.658 28 H 0.336 0.664 29 H -0.012 1.012 30 H -0.007 1.007 31 H 0.259 0.741 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.532 -12.107 9.870 18.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.238 6.238 3 C 0.075 3.925 4 C -0.206 4.206 5 C -0.092 4.092 6 C -0.142 4.142 7 C 0.039 3.961 8 H 0.099 0.901 9 N -0.358 5.358 10 C 0.006 3.994 11 C -0.543 4.543 12 H 0.081 0.919 13 C -0.202 4.202 14 N -0.582 5.582 15 Si 0.786 3.214 16 H -0.204 1.204 17 H -0.213 1.213 18 H -0.188 1.188 19 C -0.098 4.098 20 C -0.108 4.108 21 Cl -0.036 7.036 22 H 0.089 0.911 23 H 0.084 0.916 24 H 0.139 0.861 25 H 0.185 0.815 26 H 0.165 0.835 27 H 0.155 0.845 28 H 0.150 0.850 29 H 0.007 0.993 30 H 0.012 0.988 31 H 0.068 0.932 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.194 -11.656 9.483 18.157 hybrid contribution 0.234 -0.258 -0.375 0.512 sum -9.959 -11.913 9.107 18.002 Atomic orbital electron populations 1.23424 0.75977 1.05859 1.02580 1.86120 1.23784 1.25469 1.88377 1.18754 0.90226 0.86022 0.97502 1.21463 1.01501 0.90536 1.07085 1.21241 0.93584 0.98538 0.95810 1.21060 0.95009 0.96482 1.01661 1.20326 0.90853 0.90309 0.94562 0.90112 1.58740 1.14881 1.56977 1.05252 1.18970 0.94363 0.95462 0.90611 1.21518 1.38184 1.00304 0.94314 0.91906 1.25895 0.96986 1.01792 0.95499 1.70106 1.48982 1.39027 1.00100 0.85516 0.78683 0.80025 0.77171 1.20421 1.21285 1.18774 1.20711 1.00542 0.89715 0.98861 1.20235 0.89442 0.88344 1.12746 1.98332 1.71881 1.36157 1.97229 0.91088 0.91643 0.86064 0.81495 0.83539 0.84522 0.85008 0.99333 0.98825 0.93242 0.85074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.32 -7.81 9.96 -92.69 -0.92 -8.74 16 3 C 0.12 3.34 6.68 22.52 0.15 3.49 16 4 C -0.19 -4.54 9.04 22.36 0.20 -4.34 16 5 C -0.07 -2.06 9.66 22.26 0.22 -1.85 16 6 C -0.14 -4.66 4.95 -19.85 -0.10 -4.76 16 7 C 0.15 5.89 2.93 44.17 0.13 6.02 16 8 H 0.08 3.10 8.00 -2.39 -0.02 3.08 16 9 N -0.83 -29.50 8.78 -171.79 -1.51 -31.01 16 10 C 0.04 2.23 4.60 29.85 0.14 2.36 16 11 C -0.50 -28.39 8.84 25.60 0.23 -28.16 16 12 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 13 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 14 N -0.94 -57.80 13.29 21.45 0.28 -57.51 16 15 Si 0.96 45.17 29.54 68.60 2.03 47.19 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 17 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 18 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 19 C -0.08 -2.59 9.07 22.27 0.20 -2.39 16 20 C -0.08 -2.48 6.33 22.41 0.14 -2.34 16 21 Cl -0.06 -1.87 28.51 -2.72 -0.08 -1.95 16 22 H 0.07 0.77 7.66 -2.39 -0.02 0.76 16 23 H 0.06 0.81 7.66 -2.39 -0.02 0.79 16 24 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.17 2.79 6.30 -2.91 -0.02 2.77 16 26 H 0.15 3.61 8.03 -2.91 -0.02 3.58 16 27 H 0.34 9.93 9.06 -89.70 -0.81 9.12 16 28 H 0.34 11.73 7.35 -89.69 -0.66 11.07 16 29 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 30 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 31 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 32 H 0.13 4.27 6.67 -2.91 -0.02 4.25 16 Total: -1.00 -67.44 289.95 2.36 -65.08 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -0.32 Total: 17.43 kcal Atomic # 6 Polarization: -33.37 SS G_CDS: 2.88 Total: -30.49 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -1.22 Total: -88.52 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -0.92 Total: -8.74 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -0.08 Total: -1.95 kcal Total: -67.44 2.36 -65.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259276988.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.272 kcal (2) G-P(sol) polarization free energy of solvation -67.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds