Wall clock time and date at job start Mon Mar 30 2020 06:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35892 * 117.00031 * 2 1 4 4 C 1.38770 * 120.04882 * 179.97438 * 3 2 1 5 5 C 1.38123 * 119.96732 * 179.97438 * 4 3 2 6 6 C 1.38264 * 120.07286 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.95332 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.47343 * 144.99581 * 7 6 5 9 9 N 1.46905 * 109.47075 * 24.99739 * 7 6 5 10 10 C 1.53001 * 109.47072 * 264.99915 * 7 6 5 11 11 C 1.50703 * 109.47072 * 185.00098 * 10 7 6 12 12 H 1.07998 * 120.00155 * 359.97438 * 11 10 7 13 13 C 1.37875 * 119.99814 * 180.02562 * 11 10 7 14 14 N 1.31519 * 119.99750 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00163 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47100 * 90.00705 * 15 13 11 17 17 H 1.48501 * 109.47194 * 210.00700 * 15 13 11 18 18 H 1.48495 * 109.47106 * 330.00383 * 15 13 11 19 19 C 1.38363 * 120.09913 * 0.24756 * 6 5 4 20 20 Cl 1.73595 * 119.98860 * 179.74667 * 19 6 5 21 21 C 1.38283 * 120.02845 * 359.49913 * 19 6 5 22 22 H 1.09004 * 109.47054 * 60.00545 * 1 2 3 23 23 H 1.09000 * 109.47642 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47921 * 300.00484 * 1 2 3 25 25 H 1.07993 * 120.01374 * 0.02562 * 4 3 2 26 26 H 1.08006 * 119.96575 * 180.02562 * 5 4 3 27 27 H 1.00901 * 110.99869 * 176.04968 * 9 7 6 28 28 H 1.00896 * 110.99543 * 300.00090 * 9 7 6 29 29 H 1.08999 * 109.47045 * 304.99692 * 10 7 6 30 30 H 1.09002 * 109.47037 * 64.99916 * 10 7 6 31 31 H 0.96999 * 120.00012 * 179.97438 * 14 13 11 32 32 H 1.07993 * 120.03654 * 180.23026 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4317 1.2846 0.0005 5 6 4.0570 2.5162 0.0000 6 6 3.3038 3.6756 -0.0005 7 6 3.9889 5.0180 -0.0005 8 1 3.4045 5.7241 -0.5904 9 7 5.3298 4.8834 -0.5853 10 6 4.1081 5.5297 1.4364 11 6 4.6808 6.9236 1.4274 12 1 4.9348 7.3970 0.4905 13 6 4.8816 7.5941 2.6153 14 7 5.3809 8.8108 2.6073 15 14 4.4430 6.7750 4.2358 16 1 5.6197 6.0269 4.7467 17 1 4.0485 7.8114 5.2235 18 1 3.3123 5.8357 4.0256 19 6 1.9219 3.6054 0.0046 20 17 0.9791 5.0630 0.0106 21 6 1.2916 2.3747 -0.0001 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3635 0.5139 0.8899 25 1 4.0208 0.3795 0.0005 26 1 5.1355 2.5736 0.0000 27 1 5.7853 5.7809 -0.6558 28 1 5.8914 4.2334 -0.0559 29 1 3.1215 5.5453 1.8996 30 1 4.7654 4.8704 2.0035 31 1 5.5218 9.2827 3.4430 32 1 0.2130 2.3197 0.0002 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259427499.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:04 Heat of formation + Delta-G solvation = -46.434369 kcal Electronic energy + Delta-G solvation = -16563.059848 eV Core-core repulsion = 13741.611739 eV Total energy + Delta-G solvation = -2821.448109 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.24629 -39.24807 -37.40441 -36.57371 -34.45873 -31.97531 -30.79032 -30.44480 -28.31535 -25.87613 -23.68233 -23.31741 -21.23855 -19.42695 -19.01736 -17.59510 -16.95081 -16.68709 -16.35054 -16.13233 -15.44298 -15.20314 -15.06595 -14.41032 -14.35489 -14.26479 -14.01780 -13.33697 -13.03602 -12.80351 -12.76332 -12.36193 -12.21354 -11.99595 -11.92573 -11.72660 -11.59658 -11.21628 -10.78776 -9.88151 -9.57008 -9.02672 -8.30438 -6.33083 0.14321 0.32214 1.15221 1.29988 1.33676 1.44331 2.32481 2.32719 2.61316 3.04861 3.67462 3.80160 3.95761 4.09428 4.24252 4.39029 4.39649 4.56767 4.60608 4.67432 4.75020 4.80387 5.05793 5.12159 5.19725 5.34412 5.55904 5.59608 5.64992 6.22294 6.33734 6.37271 6.70233 6.73605 7.31474 8.85347 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.026257 B = 0.006218 C = 0.006068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.143714 B = 4502.164359 C = 4613.444781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.323 6.323 3 C 0.127 3.873 4 C -0.145 4.145 5 C -0.060 4.060 6 C -0.108 4.108 7 C 0.147 3.853 8 H 0.069 0.931 9 N -0.830 5.830 10 C -0.027 4.027 11 C -0.518 4.518 12 H 0.044 0.956 13 C 0.015 3.985 14 N -0.945 5.945 15 Si 0.936 3.064 16 H -0.266 1.266 17 H -0.285 1.285 18 H -0.256 1.256 19 C -0.011 4.011 20 Cl -0.072 7.072 21 C -0.201 4.201 22 H 0.064 0.936 23 H 0.125 0.875 24 H 0.061 0.939 25 H 0.158 0.842 26 H 0.153 0.847 27 H 0.346 0.654 28 H 0.338 0.662 29 H 0.015 0.985 30 H 0.015 0.985 31 H 0.265 0.735 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.045 -18.582 -4.411 21.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.237 6.237 3 C 0.081 3.919 4 C -0.164 4.164 5 C -0.078 4.078 6 C -0.110 4.110 7 C 0.035 3.965 8 H 0.087 0.913 9 N -0.359 5.359 10 C -0.066 4.066 11 C -0.556 4.556 12 H 0.062 0.938 13 C -0.183 4.183 14 N -0.585 5.585 15 Si 0.761 3.239 16 H -0.191 1.191 17 H -0.211 1.211 18 H -0.180 1.180 19 C -0.038 4.038 20 Cl -0.043 7.043 21 C -0.220 4.220 22 H 0.082 0.918 23 H 0.144 0.856 24 H 0.079 0.921 25 H 0.176 0.824 26 H 0.170 0.830 27 H 0.159 0.841 28 H 0.152 0.848 29 H 0.033 0.967 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.387 -18.777 -4.961 21.571 hybrid contribution -0.095 1.187 1.734 2.103 sum -9.481 -17.590 -3.228 20.242 Atomic orbital electron populations 1.23387 0.76483 1.05866 1.02192 1.86067 1.23400 1.25587 1.88598 1.18910 0.92435 0.84024 0.96537 1.20762 0.91556 0.99106 1.04958 1.20930 1.01014 0.89778 0.96109 1.19868 0.91737 0.96675 1.02684 1.20007 0.90884 0.91504 0.94084 0.91267 1.59247 1.04014 1.16433 1.56201 1.20178 0.96454 0.94914 0.95103 1.21281 1.41256 0.99648 0.93438 0.93794 1.25798 0.94597 0.95144 1.02764 1.70043 1.46769 1.13515 1.28195 0.85868 0.79780 0.78711 0.79591 1.19060 1.21139 1.18048 1.20663 0.91340 0.87727 1.04104 1.98369 1.72298 1.36879 1.96716 1.21150 1.01425 0.89888 1.09530 0.91786 0.85646 0.92064 0.82424 0.82968 0.84113 0.84840 0.96657 0.96641 0.92598 0.82784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.31 16 2 O -0.32 -6.89 10.50 -92.34 -0.97 -7.86 16 3 C 0.13 3.17 6.69 22.51 0.15 3.32 16 4 C -0.15 -3.59 9.99 22.37 0.22 -3.36 16 5 C -0.06 -1.70 9.26 22.25 0.21 -1.49 16 6 C -0.11 -3.69 5.06 -19.83 -0.10 -3.79 16 7 C 0.15 5.83 2.49 44.17 0.11 5.94 16 8 H 0.07 3.00 7.13 -2.39 -0.02 2.99 16 9 N -0.83 -29.68 8.79 -171.79 -1.51 -31.19 16 10 C -0.03 -1.27 3.67 29.85 0.11 -1.16 16 11 C -0.52 -28.75 9.10 25.60 0.23 -28.52 16 12 H 0.04 2.65 7.39 -2.91 -0.02 2.63 16 13 C 0.01 0.83 5.47 84.65 0.46 1.30 16 14 N -0.94 -58.27 13.96 21.45 0.30 -57.97 16 15 Si 0.94 44.53 27.47 68.60 1.88 46.42 16 16 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 17 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 18 H -0.26 -11.76 6.54 99.48 0.65 -11.11 16 19 C -0.01 -0.36 6.31 22.31 0.14 -0.22 16 20 Cl -0.07 -2.42 27.16 -2.72 -0.07 -2.49 16 21 C -0.20 -5.31 8.82 22.39 0.20 -5.11 16 22 H 0.06 0.77 7.66 -2.39 -0.02 0.75 16 23 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.06 0.78 7.66 -2.39 -0.02 0.76 16 25 H 0.16 3.04 8.06 -2.91 -0.02 3.01 16 26 H 0.15 3.81 6.28 -2.91 -0.02 3.79 16 27 H 0.35 13.45 7.90 -89.69 -0.71 12.74 16 28 H 0.34 10.73 7.20 -89.70 -0.65 10.09 16 29 H 0.02 0.73 6.96 -2.39 -0.02 0.71 16 30 H 0.02 0.70 7.57 -2.39 -0.02 0.68 16 31 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 32 H 0.15 3.30 6.30 -2.91 -0.02 3.29 16 Total: -1.00 -65.25 281.87 2.23 -63.03 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: -0.25 Total: 21.85 kcal Atomic # 6 Polarization: -34.64 SS G_CDS: 2.85 Total: -31.79 kcal Atomic # 7 Polarization: -87.95 SS G_CDS: -1.21 Total: -89.16 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -0.97 Total: -7.86 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.42 kcal Atomic # 17 Polarization: -2.42 SS G_CDS: -0.07 Total: -2.49 kcal Total: -65.25 2.23 -63.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259427499.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.594 kcal (2) G-P(sol) polarization free energy of solvation -65.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds