Wall clock time and date at job start Mon Mar 30 2020 06:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.87141 * 2 1 4 4 C 1.54450 * 110.95248 * 123.76097 * 2 1 3 5 5 C 1.51444 * 104.99921 * 143.71018 * 4 2 1 6 6 O 1.34817 * 141.52696 * 163.45566 * 5 4 2 7 7 C 1.34195 * 109.55155 * 180.02562 * 6 5 4 8 8 Cl 1.73596 * 125.79844 * 179.89330 * 7 6 5 9 9 C 1.34585 * 108.39953 * 359.63196 * 7 6 5 10 10 C 1.34266 * 110.25231 * 343.11797 * 5 4 2 11 11 C 1.51195 * 110.58822 * 0.02562 * 10 5 4 12 12 C 1.50694 * 110.34862 * 135.80803 * 11 10 5 13 13 H 1.08006 * 119.99996 * 123.76939 * 12 11 10 14 14 C 1.37882 * 120.00203 * 303.76690 * 12 11 10 15 15 N 1.31513 * 119.99598 * 5.30306 * 14 12 11 16 16 Si 1.86799 * 120.00140 * 185.30584 * 14 12 11 17 17 H 1.48504 * 109.47082 * 359.97438 * 16 14 12 18 18 H 1.48489 * 109.47275 * 120.00220 * 16 14 12 19 19 H 1.48501 * 109.47001 * 240.00296 * 16 14 12 20 20 C 1.52997 * 110.35323 * 257.98056 * 11 10 5 21 21 N 1.46900 * 109.46935 * 297.98062 * 20 11 10 22 22 H 1.08993 * 109.47088 * 183.75970 * 1 2 3 23 23 H 1.09000 * 109.46658 * 303.75883 * 1 2 3 24 24 H 1.08996 * 109.47099 * 63.75828 * 1 2 3 25 25 H 1.09004 * 110.33128 * 262.59007 * 4 2 1 26 26 H 1.09004 * 110.33516 * 24.82268 * 4 2 1 27 27 H 1.07996 * 126.60174 * 180.24518 * 9 7 6 28 28 H 0.97007 * 119.99816 * 179.97438 * 15 14 12 29 29 H 1.09006 * 109.47182 * 57.97075 * 20 11 10 30 30 H 1.08992 * 109.47231 * 177.97702 * 20 11 10 31 31 H 1.00894 * 111.00273 * 56.04217 * 21 20 11 32 32 H 1.00906 * 111.00068 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9183 1.0185 0.0000 4 6 2.0823 -0.8016 1.1991 5 6 3.3236 -1.4905 0.6717 6 8 4.4418 -2.1165 1.0904 7 6 5.1606 -2.5102 0.0279 8 17 6.6773 -3.3529 0.0838 9 6 4.5031 -2.1458 -1.0885 10 6 3.3208 -1.4893 -0.6709 11 6 2.0824 -0.8016 -1.1994 12 6 2.4409 0.1256 -2.3320 13 1 1.9641 0.0119 -3.2945 14 6 3.3774 1.1190 -2.1396 15 7 4.0336 1.1927 -1.0023 16 14 3.7142 2.3602 -3.4944 17 1 2.8515 2.0610 -4.6655 18 1 3.4184 3.7278 -2.9975 19 1 5.1411 2.2779 -3.8976 20 6 1.0565 -1.8368 -1.6650 21 7 1.6234 -2.6271 -2.7659 22 1 -0.3633 -1.0254 0.0674 23 1 -0.3632 0.5711 0.8544 24 1 -0.3633 0.4544 -0.9217 25 1 2.3408 -0.1293 2.0173 26 1 1.3514 -1.5392 1.5306 27 1 4.8171 -2.3209 -2.1069 28 1 4.6928 1.8914 -0.8670 29 1 0.8050 -2.4977 -0.8354 30 1 0.1566 -1.3272 -2.0092 31 1 2.4934 -3.0578 -2.4912 32 1 0.9643 -3.3183 -3.0916 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259981485.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:23 Heat of formation + Delta-G solvation = 13.490094 kcal Electronic energy + Delta-G solvation = -17770.027294 eV Core-core repulsion = 14951.177705 eV Total energy + Delta-G solvation = -2818.849589 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.41981 -39.40620 -37.83895 -34.48399 -34.15252 -33.21646 -30.67748 -29.37383 -26.50440 -25.75005 -23.88010 -21.98369 -20.82165 -20.08064 -18.67009 -17.36575 -16.80972 -16.56341 -16.42284 -15.66542 -15.55836 -14.79432 -14.55744 -13.98602 -13.82923 -13.59262 -13.18745 -12.95620 -12.89569 -12.81464 -12.49661 -12.35436 -12.11961 -11.89679 -11.77007 -11.58337 -11.23487 -10.56107 -10.38733 -10.07722 -9.18472 -8.80557 -7.84557 -5.97039 0.28151 0.88424 1.42105 1.48599 1.56599 2.06524 2.42882 2.55424 3.35587 4.03286 4.14913 4.32946 4.38020 4.44085 4.60645 4.74512 4.78129 4.84940 4.92627 5.05698 5.15515 5.20098 5.27009 5.50513 5.65628 5.69045 5.87917 5.96027 6.05264 6.43929 6.50071 6.69161 6.94011 7.08773 7.66825 9.10807 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.017591 B = 0.010316 C = 0.008399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.378668 B = 2713.633993 C = 3333.070920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.073 4.073 3 H 0.067 0.933 4 C -0.002 4.002 5 C -0.078 4.078 6 O -0.183 6.183 7 C -0.008 4.008 8 Cl 0.024 6.976 9 C -0.148 4.148 10 C -0.098 4.098 11 C 0.122 3.878 12 C -0.483 4.483 13 H 0.050 0.950 14 C 0.027 3.973 15 N -0.894 5.894 16 Si 0.929 3.071 17 H -0.272 1.272 18 H -0.287 1.287 19 H -0.297 1.297 20 C 0.092 3.908 21 N -0.846 5.846 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.096 0.904 27 H 0.142 0.858 28 H 0.248 0.752 29 H 0.014 0.986 30 H 0.070 0.930 31 H 0.334 0.666 32 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.562 -7.009 3.173 8.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.093 4.093 3 H 0.085 0.915 4 C -0.039 4.039 5 C -0.127 4.127 6 O -0.083 6.083 7 C -0.083 4.083 8 Cl 0.052 6.948 9 C -0.168 4.168 10 C -0.100 4.100 11 C 0.121 3.879 12 C -0.521 4.521 13 H 0.069 0.931 14 C -0.173 4.173 15 N -0.533 5.533 16 Si 0.758 3.242 17 H -0.197 1.197 18 H -0.214 1.214 19 H -0.224 1.224 20 C -0.038 4.038 21 N -0.376 5.376 22 H 0.084 0.916 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.114 0.886 27 H 0.160 0.840 28 H 0.057 0.943 29 H 0.032 0.968 30 H 0.088 0.912 31 H 0.147 0.853 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.199 -6.319 3.158 7.755 hybrid contribution 1.205 0.088 -0.198 1.225 sum -1.993 -6.231 2.960 7.181 Atomic orbital electron populations 1.21742 0.93274 1.01983 1.01702 1.21926 0.95438 0.99563 0.92377 0.91475 1.20834 0.87366 0.96810 0.98897 1.23470 0.89903 1.03064 0.96218 1.83544 1.29620 1.60389 1.34764 1.22152 0.91953 1.08564 0.85611 1.98345 1.23730 1.74500 1.98218 1.20837 0.95610 1.02966 0.97402 1.21361 0.97636 0.97409 0.93629 1.17501 0.86820 0.90646 0.92936 1.21124 1.21539 1.12399 0.97061 0.93149 1.25404 0.96222 0.99122 0.96540 1.70147 1.25146 1.33086 1.24888 0.85953 0.76991 0.80082 0.81151 1.19711 1.21353 1.22384 1.21744 0.97067 0.94286 0.90744 1.58537 1.08368 1.30810 1.39872 0.91603 0.91927 0.92685 0.91564 0.88595 0.84038 0.94264 0.96796 0.91153 0.85333 0.84979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 7.98 71.98 0.57 -3.45 16 2 C -0.07 -2.94 2.74 -9.80 -0.03 -2.97 16 3 H 0.07 3.21 6.43 -2.39 -0.02 3.19 16 4 C 0.00 -0.08 6.35 30.58 0.19 0.12 16 5 C -0.08 -3.41 8.21 25.02 0.21 -3.20 16 6 O -0.18 -8.07 10.66 -6.55 -0.07 -8.14 16 7 C -0.01 -0.32 7.93 66.98 0.53 0.21 16 8 Cl 0.02 0.77 29.30 -2.72 -0.08 0.69 16 9 C -0.15 -6.47 10.04 22.25 0.22 -6.25 16 10 C -0.10 -4.43 3.26 -19.80 -0.06 -4.50 16 11 C 0.12 5.30 0.39 -53.02 -0.02 5.28 16 12 C -0.48 -24.45 7.79 25.60 0.20 -24.25 16 13 H 0.05 2.66 7.75 -2.91 -0.02 2.64 16 14 C 0.03 1.39 4.90 84.66 0.41 1.81 16 15 N -0.89 -48.81 10.69 21.45 0.23 -48.58 16 16 Si 0.93 43.44 29.54 68.60 2.03 45.47 16 17 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 18 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 19 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 20 C 0.09 3.37 4.47 86.30 0.39 3.76 16 21 N -0.85 -29.86 9.22 -186.72 -1.72 -31.59 16 22 H 0.07 1.77 6.60 -2.39 -0.02 1.75 16 23 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.05 1.77 7.80 -2.39 -0.02 1.75 16 25 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 26 H 0.10 2.94 7.83 -2.38 -0.02 2.92 16 27 H 0.14 6.02 8.06 -2.91 -0.02 6.00 16 28 H 0.25 13.52 8.31 -92.70 -0.77 12.75 16 29 H 0.01 0.47 7.65 -2.38 -0.02 0.45 16 30 H 0.07 2.50 6.90 -2.39 -0.02 2.48 16 31 H 0.33 12.12 7.33 -89.70 -0.66 11.46 16 32 H 0.34 9.57 9.08 -89.69 -0.81 8.76 16 Total: -1.00 -58.05 274.81 2.69 -55.36 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -0.31 Total: 20.23 kcal Atomic # 6 Polarization: -36.05 SS G_CDS: 2.62 Total: -33.44 kcal Atomic # 7 Polarization: -78.67 SS G_CDS: -1.49 Total: -80.17 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -0.07 Total: -8.14 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 17 Polarization: 0.77 SS G_CDS: -0.08 Total: 0.69 kcal Total: -58.05 2.69 -55.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259981485.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.846 kcal (2) G-P(sol) polarization free energy of solvation -58.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds