Wall clock time and date at job start Mon Mar 30 2020 06:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 110.84240 * 2 1 4 4 C 1.54445 * 110.98237 * 236.24006 * 2 1 3 5 5 C 1.51442 * 104.99825 * 267.40587 * 4 2 1 6 6 O 1.34820 * 141.52488 * 163.11746 * 5 4 2 7 7 C 1.34192 * 109.54966 * 180.02562 * 6 5 4 8 8 Cl 1.73600 * 125.79908 * 180.02562 * 7 6 5 9 9 C 1.34586 * 108.40273 * 0.02562 * 7 6 5 10 10 C 1.34271 * 110.25561 * 343.12716 * 5 4 2 11 11 C 1.51193 * 110.58309 * 0.02562 * 10 5 4 12 12 C 1.50698 * 110.44284 * 135.75325 * 11 10 5 13 13 H 1.08001 * 119.99908 * 357.53625 * 12 11 10 14 14 C 1.37870 * 120.00151 * 177.53098 * 12 11 10 15 15 N 1.31521 * 120.00118 * 9.01629 * 14 12 11 16 16 Si 1.86800 * 120.00082 * 189.01321 * 14 12 11 17 17 H 1.48498 * 109.47164 * 90.00483 * 16 14 12 18 18 H 1.48506 * 109.47277 * 210.00172 * 16 14 12 19 19 H 1.48497 * 109.47106 * 330.00132 * 16 14 12 20 20 C 1.53003 * 110.34827 * 257.98741 * 11 10 5 21 21 N 1.46906 * 109.46937 * 298.14466 * 20 11 10 22 22 H 1.08996 * 109.47629 * 302.76720 * 1 2 3 23 23 H 1.09005 * 109.47115 * 62.76598 * 1 2 3 24 24 H 1.09004 * 109.47131 * 182.76164 * 1 2 3 25 25 H 1.08998 * 110.33746 * 26.28952 * 4 2 1 26 26 H 1.09005 * 110.33641 * 148.53169 * 4 2 1 27 27 H 1.08007 * 126.60433 * 179.97438 * 9 7 6 28 28 H 0.97000 * 119.99878 * 179.97438 * 15 14 12 29 29 H 1.08997 * 109.47067 * 178.14375 * 20 11 10 30 30 H 1.08998 * 109.47160 * 58.13894 * 20 11 10 31 31 H 1.00894 * 110.99603 * 174.09288 * 21 20 11 32 32 H 1.00902 * 110.99592 * 298.04934 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9178 1.0187 0.0000 4 6 2.0830 -0.8014 -1.1989 5 6 2.2852 -2.2065 -0.6713 6 8 2.4677 -3.4750 -1.0899 7 6 2.5838 -4.2862 -0.0272 8 17 2.8313 -6.0035 -0.0829 9 6 2.4758 -3.5421 1.0891 10 6 2.2845 -2.2034 0.6714 11 6 2.0819 -0.8014 1.1997 12 6 1.0866 -0.8039 2.3312 13 1 0.6036 -1.7246 2.6234 14 6 0.7926 0.3691 2.9934 15 7 1.2401 1.5158 2.5300 16 14 -0.2412 0.3298 4.5487 17 1 0.6464 0.1767 5.7294 18 1 -1.0071 1.5966 4.6663 19 1 -1.1848 -0.8152 4.4871 20 6 3.4142 -0.2107 1.6656 21 7 3.9528 -1.0238 2.7642 22 1 -0.3634 0.5562 0.8641 23 1 -0.3633 0.4703 -0.9138 24 1 -0.3633 -1.0265 0.0495 25 1 1.3631 -0.8039 -2.0173 26 1 3.0326 -0.3808 -1.5299 27 1 2.5259 -3.8980 2.1076 28 1 1.0329 2.3410 2.9958 29 1 3.2574 0.8106 2.0125 30 1 4.1206 -0.2081 0.8355 31 1 4.8763 -0.7124 3.0254 32 1 3.3305 -1.0162 3.5584 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259981494.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:28 Heat of formation + Delta-G solvation = 27.293414 kcal Electronic energy + Delta-G solvation = -17643.021845 eV Core-core repulsion = 14824.770813 eV Total energy + Delta-G solvation = -2818.251032 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.99900 -37.74135 -36.50529 -33.18536 -32.18993 -31.49562 -28.66071 -27.59969 -25.23073 -24.31825 -21.75612 -20.43815 -19.35580 -18.78985 -16.71371 -15.76618 -15.33844 -14.74066 -14.61091 -14.12244 -13.67917 -13.27056 -12.77397 -12.47922 -12.14841 -11.97406 -11.70344 -11.44161 -11.27003 -11.14207 -10.92227 -10.71863 -10.52707 -10.26620 -10.03422 -9.69822 -9.46189 -9.00630 -8.59514 -8.40546 -7.55579 -7.28755 -6.10116 -4.11093 1.66592 2.28050 3.23058 3.32193 3.35808 3.51560 3.80845 4.35825 5.15417 5.59251 5.72942 5.79945 5.90935 6.01341 6.14002 6.24305 6.50899 6.58912 6.66871 6.80591 6.82390 6.87919 7.02093 7.28014 7.35615 7.42634 7.58744 7.67620 7.85396 7.92707 8.30938 8.41704 8.59584 8.88223 9.48938 10.92993 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.024770 B = 0.007979 C = 0.007291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.112347 B = 3508.392584 C = 3839.281752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.059 4.059 3 H 0.086 0.914 4 C -0.022 4.022 5 C -0.070 4.070 6 O -0.172 6.172 7 C -0.009 4.009 8 Cl -0.002 7.002 9 C -0.122 4.122 10 C -0.107 4.107 11 C 0.137 3.863 12 C -0.485 4.485 13 H 0.057 0.943 14 C 0.065 3.935 15 N -0.885 5.885 16 Si 0.883 3.117 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.274 1.274 20 C 0.079 3.921 21 N -0.844 5.844 22 H 0.079 0.921 23 H 0.019 0.981 24 H 0.038 0.962 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.148 0.852 28 H 0.260 0.740 29 H 0.063 0.937 30 H 0.025 0.975 31 H 0.312 0.688 32 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.466 -4.504 -3.686 6.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.078 4.078 3 H 0.105 0.895 4 C -0.059 4.059 5 C -0.119 4.119 6 O -0.072 6.072 7 C -0.084 4.084 8 Cl 0.026 6.974 9 C -0.143 4.143 10 C -0.108 4.108 11 C 0.136 3.864 12 C -0.524 4.524 13 H 0.076 0.924 14 C -0.136 4.136 15 N -0.523 5.523 16 Si 0.711 3.289 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.199 1.199 20 C -0.051 4.051 21 N -0.372 5.372 22 H 0.097 0.903 23 H 0.038 0.962 24 H 0.057 0.943 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.166 0.834 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.044 0.956 31 H 0.122 0.878 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.417 -5.148 -4.458 7.226 hybrid contribution -0.431 0.455 1.476 1.603 sum 1.986 -4.693 -2.983 5.905 Atomic orbital electron populations 1.21486 0.94820 1.00582 0.99874 1.21858 0.96203 0.98273 0.91470 0.89545 1.21096 1.00880 0.83914 1.00045 1.23322 1.08642 0.83991 0.95909 1.83597 1.72748 1.16530 1.34281 1.22005 1.15954 0.84499 0.85986 1.98355 1.95712 1.05063 1.98266 1.20825 1.04041 0.92002 0.97417 1.21404 1.00175 0.95989 0.93260 1.17378 0.92849 0.83375 0.92785 1.20885 1.22681 0.94122 1.14693 0.92445 1.24873 0.96099 0.95475 0.97203 1.69919 1.46130 0.97456 1.38818 0.86725 0.80591 0.77411 0.84164 1.20798 1.21475 1.19934 1.21703 0.94453 0.96870 0.92096 1.58733 1.05358 1.59814 1.13281 0.90252 0.96227 0.94278 0.91607 0.90904 0.83446 0.93003 0.91900 0.95627 0.87842 0.84302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.31 8.11 37.16 0.30 -2.00 16 2 C -0.06 -1.22 2.30 -89.09 -0.21 -1.42 16 3 H 0.09 1.86 7.73 -51.92 -0.40 1.46 16 4 C -0.02 -0.41 6.34 -26.76 -0.17 -0.58 16 5 C -0.07 -1.45 8.21 -35.34 -0.29 -1.74 16 6 O -0.17 -3.53 10.66 4.57 0.05 -3.48 16 7 C -0.01 -0.18 7.93 29.44 0.23 0.05 16 8 Cl 0.00 -0.04 29.30 -51.86 -1.52 -1.56 16 9 C -0.12 -2.52 10.89 -39.62 -0.43 -2.95 16 10 C -0.11 -2.34 5.23 -104.52 -0.55 -2.88 16 11 C 0.14 3.05 0.26 -155.80 -0.04 3.01 16 12 C -0.49 -11.73 5.58 -34.44 -0.19 -11.93 16 13 H 0.06 1.48 7.78 -52.49 -0.41 1.07 16 14 C 0.06 1.56 3.94 -17.82 -0.07 1.49 16 15 N -0.88 -21.63 10.07 55.43 0.56 -21.08 16 16 Si 0.88 19.61 29.55 -169.99 -5.02 14.58 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 C 0.08 1.72 5.41 -3.82 -0.02 1.70 16 21 N -0.84 -16.97 9.21 -10.37 -0.10 -17.06 16 22 H 0.08 1.82 5.91 -51.93 -0.31 1.52 16 23 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.04 0.83 8.08 -51.93 -0.42 0.42 16 25 H 0.07 1.10 7.91 -51.93 -0.41 0.69 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.15 2.89 8.06 -52.48 -0.42 2.46 16 28 H 0.26 6.27 8.31 -40.82 -0.34 5.93 16 29 H 0.06 1.48 6.13 -51.93 -0.32 1.16 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.31 5.51 9.08 -39.29 -0.36 5.15 16 32 H 0.34 7.25 8.12 -39.29 -0.32 6.93 16 LS Contribution 275.85 15.07 4.16 4.16 Total: -1.00 -24.78 275.85 -7.07 -31.85 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -3.77 Total: 9.85 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -1.43 Total: -17.26 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.46 Total: -38.14 kcal Atomic # 8 Polarization: -3.53 SS G_CDS: 0.05 Total: -3.48 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.58 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.52 Total: -1.56 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -24.78 -7.07 -31.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259981494.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.146 kcal (2) G-P(sol) polarization free energy of solvation -24.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds