Wall clock time and date at job start Mon Mar 30 2020 06:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 110.84240 * 2 1 4 4 C 1.54445 * 110.98237 * 236.24006 * 2 1 3 5 5 C 1.51442 * 104.99825 * 267.40587 * 4 2 1 6 6 O 1.34820 * 141.52488 * 163.11746 * 5 4 2 7 7 C 1.34192 * 109.54966 * 180.02562 * 6 5 4 8 8 Cl 1.73600 * 125.79908 * 180.02562 * 7 6 5 9 9 C 1.34586 * 108.40273 * 0.02562 * 7 6 5 10 10 C 1.34271 * 110.25561 * 343.12716 * 5 4 2 11 11 C 1.51193 * 110.58309 * 0.02562 * 10 5 4 12 12 C 1.50698 * 110.44284 * 135.75325 * 11 10 5 13 13 H 1.08001 * 119.99908 * 357.53625 * 12 11 10 14 14 C 1.37870 * 120.00151 * 177.53098 * 12 11 10 15 15 N 1.31521 * 120.00118 * 9.01629 * 14 12 11 16 16 Si 1.86800 * 120.00082 * 189.01321 * 14 12 11 17 17 H 1.48498 * 109.47164 * 90.00483 * 16 14 12 18 18 H 1.48506 * 109.47277 * 210.00172 * 16 14 12 19 19 H 1.48497 * 109.47106 * 330.00132 * 16 14 12 20 20 C 1.53003 * 110.34827 * 257.98741 * 11 10 5 21 21 N 1.46906 * 109.46937 * 298.14466 * 20 11 10 22 22 H 1.08996 * 109.47629 * 302.76720 * 1 2 3 23 23 H 1.09005 * 109.47115 * 62.76598 * 1 2 3 24 24 H 1.09004 * 109.47131 * 182.76164 * 1 2 3 25 25 H 1.08998 * 110.33746 * 26.28952 * 4 2 1 26 26 H 1.09005 * 110.33641 * 148.53169 * 4 2 1 27 27 H 1.08007 * 126.60433 * 179.97438 * 9 7 6 28 28 H 0.97000 * 119.99878 * 179.97438 * 15 14 12 29 29 H 1.08997 * 109.47067 * 178.14375 * 20 11 10 30 30 H 1.08998 * 109.47160 * 58.13894 * 20 11 10 31 31 H 1.00894 * 110.99603 * 174.09288 * 21 20 11 32 32 H 1.00902 * 110.99592 * 298.04934 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9178 1.0187 0.0000 4 6 2.0830 -0.8014 -1.1989 5 6 2.2852 -2.2065 -0.6713 6 8 2.4677 -3.4750 -1.0899 7 6 2.5838 -4.2862 -0.0272 8 17 2.8313 -6.0035 -0.0829 9 6 2.4758 -3.5421 1.0891 10 6 2.2845 -2.2034 0.6714 11 6 2.0819 -0.8014 1.1997 12 6 1.0866 -0.8039 2.3312 13 1 0.6036 -1.7246 2.6234 14 6 0.7926 0.3691 2.9934 15 7 1.2401 1.5158 2.5300 16 14 -0.2412 0.3298 4.5487 17 1 0.6464 0.1767 5.7294 18 1 -1.0071 1.5966 4.6663 19 1 -1.1848 -0.8152 4.4871 20 6 3.4142 -0.2107 1.6656 21 7 3.9528 -1.0238 2.7642 22 1 -0.3634 0.5562 0.8641 23 1 -0.3633 0.4703 -0.9138 24 1 -0.3633 -1.0265 0.0495 25 1 1.3631 -0.8039 -2.0173 26 1 3.0326 -0.3808 -1.5299 27 1 2.5259 -3.8980 2.1076 28 1 1.0329 2.3410 2.9958 29 1 3.2574 0.8106 2.0125 30 1 4.1206 -0.2081 0.8355 31 1 4.8763 -0.7124 3.0254 32 1 3.3305 -1.0162 3.5584 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259981494.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:27 Heat of formation + Delta-G solvation = 13.390575 kcal Electronic energy + Delta-G solvation = -17643.624718 eV Core-core repulsion = 14824.770813 eV Total energy + Delta-G solvation = -2818.853905 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.57433 -39.38829 -37.88393 -34.87958 -33.93668 -33.11273 -30.29076 -29.30000 -26.85578 -26.08141 -23.41619 -22.04678 -20.96403 -20.42328 -18.40022 -17.37123 -17.07969 -16.46106 -16.26347 -15.72710 -15.28098 -14.95818 -14.43561 -14.03813 -13.76026 -13.61328 -13.12317 -13.09569 -12.98891 -12.79740 -12.64698 -12.37173 -12.13261 -11.92840 -11.71504 -11.35906 -11.17573 -10.75135 -10.28896 -10.19892 -9.18996 -8.88338 -7.96505 -6.00389 0.20715 0.72827 1.43153 1.50030 1.55223 1.88860 2.27224 2.51948 3.28204 4.00422 4.12742 4.23448 4.41830 4.45125 4.54571 4.73787 4.88442 4.96091 5.10865 5.15615 5.18401 5.22512 5.35651 5.57284 5.67230 5.75640 5.84354 5.97045 6.05206 6.28806 6.52983 6.71489 6.89681 7.08547 7.60343 9.04323 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.024770 B = 0.007979 C = 0.007291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.112347 B = 3508.392584 C = 3839.281752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.059 4.059 3 H 0.078 0.922 4 C -0.015 4.015 5 C -0.074 4.074 6 O -0.175 6.175 7 C -0.005 4.005 8 Cl 0.033 6.967 9 C -0.141 4.141 10 C -0.133 4.133 11 C 0.132 3.868 12 C -0.488 4.488 13 H 0.035 0.965 14 C 0.042 3.958 15 N -0.893 5.893 16 Si 0.923 3.077 17 H -0.281 1.281 18 H -0.291 1.291 19 H -0.282 1.282 20 C 0.088 3.912 21 N -0.841 5.841 22 H 0.053 0.947 23 H 0.045 0.955 24 H 0.026 0.974 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.150 0.850 28 H 0.258 0.742 29 H 0.043 0.957 30 H 0.029 0.971 31 H 0.327 0.673 32 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.828 -5.049 -4.508 7.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.078 4.078 3 H 0.096 0.904 4 C -0.052 4.052 5 C -0.123 4.123 6 O -0.075 6.075 7 C -0.080 4.080 8 Cl 0.061 6.939 9 C -0.161 4.161 10 C -0.134 4.134 11 C 0.131 3.869 12 C -0.526 4.526 13 H 0.053 0.947 14 C -0.158 4.158 15 N -0.532 5.532 16 Si 0.752 3.248 17 H -0.207 1.207 18 H -0.217 1.217 19 H -0.208 1.208 20 C -0.043 4.043 21 N -0.369 5.369 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.045 0.955 25 H 0.106 0.894 26 H 0.111 0.889 27 H 0.168 0.832 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.138 0.862 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.793 -5.698 -5.279 8.254 hybrid contribution -0.534 0.530 1.752 1.906 sum 2.259 -5.168 -3.527 6.652 Atomic orbital electron populations 1.21372 0.95029 0.99525 1.00060 1.21762 0.96015 0.97919 0.92121 0.90416 1.21081 1.02425 0.82280 0.99451 1.23667 1.08173 0.84683 0.95810 1.83608 1.72709 1.16549 1.34607 1.22256 1.14377 0.85995 0.85394 1.98367 1.95443 1.01907 1.98171 1.20934 1.05076 0.92029 0.98066 1.21515 1.01554 0.96252 0.94093 1.17400 0.92511 0.84261 0.92739 1.20850 1.23041 0.93128 1.15597 0.94697 1.25168 0.96752 0.95359 0.98482 1.69981 1.46618 0.97451 1.39161 0.86107 0.79509 0.76711 0.82497 1.20663 1.21678 1.20776 1.21552 0.94493 0.95831 0.92469 1.58692 1.05984 1.59519 1.12742 0.92786 0.93596 0.95524 0.89357 0.88856 0.83208 0.93235 0.93888 0.95213 0.86240 0.84986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.20 8.11 71.98 0.58 -3.61 16 2 C -0.06 -2.38 2.30 -9.80 -0.02 -2.40 16 3 H 0.08 3.28 7.73 -2.38 -0.02 3.27 16 4 C -0.02 -0.54 6.34 30.58 0.19 -0.34 16 5 C -0.07 -2.97 8.21 25.02 0.21 -2.76 16 6 O -0.17 -6.86 10.66 -6.55 -0.07 -6.93 16 7 C -0.01 -0.19 7.93 66.98 0.53 0.34 16 8 Cl 0.03 0.94 29.30 -2.72 -0.08 0.86 16 9 C -0.14 -5.67 10.89 22.25 0.24 -5.43 16 10 C -0.13 -5.70 5.23 -19.80 -0.10 -5.80 16 11 C 0.13 5.80 0.26 -53.02 -0.01 5.79 16 12 C -0.49 -23.71 5.58 25.60 0.14 -23.56 16 13 H 0.03 1.82 7.78 -2.91 -0.02 1.80 16 14 C 0.04 2.04 3.94 84.65 0.33 2.38 16 15 N -0.89 -43.65 10.07 21.45 0.22 -43.44 16 16 Si 0.92 40.34 29.55 68.60 2.03 42.37 16 17 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 C 0.09 3.75 5.41 86.30 0.47 4.22 16 21 N -0.84 -33.30 9.21 -186.71 -1.72 -35.02 16 22 H 0.05 2.47 5.91 -2.39 -0.01 2.45 16 23 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 24 H 0.03 1.11 8.08 -2.38 -0.02 1.09 16 25 H 0.09 2.69 7.91 -2.39 -0.02 2.67 16 26 H 0.09 2.89 8.14 -2.38 -0.02 2.87 16 27 H 0.15 5.81 8.06 -2.91 -0.02 5.79 16 28 H 0.26 12.42 8.31 -92.71 -0.77 11.65 16 29 H 0.04 2.02 6.13 -2.39 -0.01 2.00 16 30 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.33 11.19 9.08 -89.70 -0.81 10.38 16 32 H 0.34 14.17 8.12 -89.69 -0.73 13.44 16 Total: -1.00 -51.10 275.85 2.55 -48.55 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: -0.38 Total: 24.81 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: 2.56 Total: -31.19 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -1.50 Total: -78.46 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.07 Total: -6.93 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Atomic # 17 Polarization: 0.94 SS G_CDS: -0.08 Total: 0.86 kcal Total: -51.10 2.55 -48.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259981494.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.936 kcal (2) G-P(sol) polarization free energy of solvation -51.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds