Wall clock time and date at job start Mon Mar 30 2020 06:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35892 * 116.99919 * 2 1 4 4 C 1.38736 * 120.05270 * 0.02562 * 3 2 1 5 5 C 1.38229 * 119.93326 * 180.02562 * 4 3 2 6 6 Cl 1.73603 * 119.98649 * 179.97438 * 5 4 3 7 7 C 1.38416 * 120.03207 * 359.97373 * 5 4 3 8 8 C 1.38219 * 120.09475 * 359.97438 * 7 5 4 9 9 C 1.50703 * 119.96543 * 180.02562 * 8 7 5 10 10 H 1.08999 * 109.47376 * 219.97534 * 9 8 7 11 11 N 1.46898 * 109.47081 * 339.98196 * 9 8 7 12 12 C 1.50707 * 109.47060 * 99.97835 * 9 8 7 13 13 H 1.08007 * 119.99627 * 0.02562 * 12 9 8 14 14 C 1.37875 * 119.99984 * 180.02562 * 12 9 8 15 15 N 1.31515 * 119.99734 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 119.99953 * 180.02562 * 14 12 9 17 17 H 1.48502 * 109.47138 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47182 * 120.00008 * 16 14 12 19 19 H 1.48498 * 109.47148 * 240.00423 * 16 14 12 20 20 C 1.38175 * 120.07246 * 0.02562 * 8 7 5 21 21 C 1.50699 * 120.01636 * 179.74413 * 20 8 7 22 22 H 1.09004 * 109.47071 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47382 * 300.00243 * 1 2 3 24 24 H 1.09006 * 109.46868 * 60.00649 * 1 2 3 25 25 H 1.08001 * 120.02879 * 0.03704 * 4 3 2 26 26 H 1.07999 * 119.94942 * 180.02562 * 7 5 4 27 27 H 1.00898 * 111.00057 * 59.99848 * 11 9 8 28 28 H 1.00900 * 110.99749 * 183.95122 * 11 9 8 29 29 H 0.97002 * 119.99349 * 180.02562 * 15 14 12 30 30 H 1.08998 * 109.46771 * 90.00461 * 21 20 8 31 31 H 1.09006 * 109.46727 * 209.99824 * 21 20 8 32 32 H 1.08992 * 109.47223 * 329.99935 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2914 2.3750 0.0005 5 6 1.9215 3.6054 0.0000 6 17 0.9786 5.0631 0.0000 7 6 3.3038 3.6757 -0.0005 8 6 4.0568 2.5166 0.0000 9 6 5.5617 2.5966 0.0000 10 1 5.9664 1.8292 -0.6598 11 7 5.9816 3.9219 -0.4746 12 6 6.0764 2.3781 1.3995 13 1 5.3830 2.1987 2.2080 14 6 7.4323 2.4071 1.6478 15 7 8.2764 2.6259 0.6634 16 14 8.0702 2.1354 3.3824 17 1 6.9254 1.9125 4.3016 18 1 8.9602 0.9468 3.4020 19 1 8.8321 3.3317 3.8226 20 6 3.4312 1.2846 0.0006 21 6 4.2534 0.0216 -0.0047 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.2128 2.3200 0.0016 26 1 3.7948 4.6377 -0.0005 27 1 5.6189 4.6510 0.1210 28 1 6.9865 3.9790 -0.5451 29 1 9.2304 2.6460 0.8380 30 1 4.4556 -0.2844 1.0217 31 1 3.7037 -0.7676 -0.5176 32 1 5.1954 0.2035 -0.5219 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260037605.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:14 Heat of formation + Delta-G solvation = -29.703816 kcal Electronic energy + Delta-G solvation = -16856.424839 eV Core-core repulsion = 14035.702221 eV Total energy + Delta-G solvation = -2820.722618 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.93301 -37.58558 -36.23117 -34.35828 -32.08459 -31.44654 -28.92886 -27.42656 -26.24304 -25.74376 -22.98746 -21.10358 -19.86584 -17.34652 -16.59549 -16.20856 -15.55022 -15.45380 -14.83005 -14.24202 -13.74296 -13.53828 -13.26509 -12.72037 -12.44148 -12.31446 -12.04152 -11.72736 -11.37260 -11.23617 -11.13072 -10.91825 -10.81791 -10.61392 -10.53250 -10.31289 -9.90756 -9.61766 -8.71847 -8.00107 -7.62694 -7.26755 -6.14624 -4.30634 1.70829 1.93260 2.49508 3.19069 3.28395 3.33249 3.52678 4.16515 4.34462 5.08205 5.11673 5.19649 5.22062 5.49395 5.51537 5.64166 5.80574 6.01356 6.22299 6.29127 6.38380 6.51055 6.71957 6.84539 6.91689 7.06688 7.22365 7.66146 7.70129 7.71239 8.01491 8.60643 8.87008 9.04958 9.41114 10.83544 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.020597 B = 0.007209 C = 0.006016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.116558 B = 3882.918950 C = 4653.097684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.312 6.312 3 C 0.127 3.873 4 C -0.223 4.223 5 C -0.006 4.006 6 Cl -0.090 7.090 7 C -0.131 4.131 8 C 0.015 3.985 9 C 0.241 3.759 10 H 0.060 0.940 11 N -0.852 5.852 12 C -0.539 4.539 13 H 0.057 0.943 14 C 0.068 3.932 15 N -0.893 5.893 16 Si 0.896 3.104 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.283 1.283 20 C -0.109 4.109 21 C -0.097 4.097 22 H 0.095 0.905 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.127 0.873 26 H 0.136 0.864 27 H 0.313 0.687 28 H 0.358 0.642 29 H 0.266 0.734 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.226 -1.669 -1.343 12.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.226 6.226 3 C 0.082 3.918 4 C -0.242 4.242 5 C -0.032 4.032 6 Cl -0.061 7.061 7 C -0.150 4.150 8 C 0.014 3.986 9 C 0.131 3.869 10 H 0.077 0.923 11 N -0.382 5.382 12 C -0.579 4.579 13 H 0.076 0.924 14 C -0.135 4.135 15 N -0.532 5.532 16 Si 0.724 3.276 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.209 1.209 20 C -0.110 4.110 21 C -0.153 4.153 22 H 0.113 0.887 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.144 0.856 26 H 0.153 0.847 27 H 0.122 0.878 28 H 0.174 0.826 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.427 -1.905 -2.066 12.741 hybrid contribution 0.433 0.273 1.974 2.039 sum -11.994 -1.632 -0.092 12.105 Atomic orbital electron populations 1.22984 0.79288 1.03333 1.01124 1.86071 1.20557 1.26802 1.89139 1.18584 0.91597 0.83340 0.98252 1.20727 0.99567 0.90785 1.13144 1.20552 0.91770 0.86033 1.04864 1.98318 1.73246 1.37437 1.97122 1.20847 0.90232 1.00269 1.03612 1.20206 0.98308 0.89907 0.90212 1.18051 0.83790 0.90246 0.94791 0.92294 1.59562 1.19146 1.04549 1.54981 1.21746 0.91904 1.50039 0.94189 0.92441 1.24990 0.96725 0.94401 0.97374 1.69744 1.02886 1.49473 1.31065 0.86463 0.78897 0.77900 0.84355 1.19697 1.20795 1.20937 1.19199 0.89751 0.96693 1.05331 1.20552 0.99090 0.93179 1.02503 0.88659 0.92960 0.92966 0.85556 0.84655 0.87759 0.82568 0.92421 0.91251 0.92683 0.90563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.31 -4.92 9.54 -19.40 -0.19 -5.11 16 3 C 0.13 2.28 6.66 -39.22 -0.26 2.02 16 4 C -0.22 -3.72 8.82 -39.40 -0.35 -4.07 16 5 C -0.01 -0.10 6.32 -39.52 -0.25 -0.35 16 6 Cl -0.09 -1.38 28.95 -51.86 -1.50 -2.88 16 7 C -0.13 -2.59 9.03 -39.52 -0.36 -2.95 16 8 C 0.01 0.32 5.02 -104.65 -0.53 -0.21 16 9 C 0.24 5.76 2.40 -70.01 -0.17 5.59 16 10 H 0.06 1.53 6.40 -51.93 -0.33 1.20 16 11 N -0.85 -19.65 8.66 -6.65 -0.06 -19.71 16 12 C -0.54 -13.91 8.48 -34.44 -0.29 -14.20 16 13 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 14 C 0.07 1.76 5.38 -17.82 -0.10 1.66 16 15 N -0.89 -23.74 11.54 55.43 0.64 -23.10 16 16 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 C -0.11 -2.17 5.89 -104.46 -0.61 -2.79 16 21 C -0.10 -1.83 9.19 36.01 0.33 -1.50 16 22 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 24 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 25 H 0.13 1.77 6.30 -52.49 -0.33 1.44 16 26 H 0.14 2.64 6.24 -52.49 -0.33 2.32 16 27 H 0.31 6.89 7.28 -39.29 -0.29 6.60 16 28 H 0.36 8.82 7.07 -39.29 -0.28 8.54 16 29 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.05 0.92 7.53 -51.93 -0.39 0.53 16 32 H 0.08 1.52 6.12 -51.93 -0.32 1.20 16 LS Contribution 281.14 15.07 4.24 4.24 Total: -1.00 -26.70 281.14 -6.92 -33.63 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -3.44 Total: 12.94 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -1.59 Total: -15.49 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 0.58 Total: -42.81 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.19 Total: -5.11 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -1.50 Total: -2.88 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -26.70 -6.92 -33.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260037605.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.922 kcal (2) G-P(sol) polarization free energy of solvation -26.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds