Wall clock time and date at job start Mon Mar 30 2020 06:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35892 * 116.99919 * 2 1 4 4 C 1.38736 * 120.05270 * 0.02562 * 3 2 1 5 5 C 1.38229 * 119.93326 * 180.02562 * 4 3 2 6 6 Cl 1.73603 * 119.98649 * 179.97438 * 5 4 3 7 7 C 1.38416 * 120.03207 * 359.97373 * 5 4 3 8 8 C 1.38219 * 120.09475 * 359.97438 * 7 5 4 9 9 C 1.50703 * 119.96543 * 180.02562 * 8 7 5 10 10 H 1.08999 * 109.47376 * 219.97534 * 9 8 7 11 11 N 1.46898 * 109.47081 * 339.98196 * 9 8 7 12 12 C 1.50707 * 109.47060 * 99.97835 * 9 8 7 13 13 H 1.08007 * 119.99627 * 0.02562 * 12 9 8 14 14 C 1.37875 * 119.99984 * 180.02562 * 12 9 8 15 15 N 1.31515 * 119.99734 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 119.99953 * 180.02562 * 14 12 9 17 17 H 1.48502 * 109.47138 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47182 * 120.00008 * 16 14 12 19 19 H 1.48498 * 109.47148 * 240.00423 * 16 14 12 20 20 C 1.38175 * 120.07246 * 0.02562 * 8 7 5 21 21 C 1.50699 * 120.01636 * 179.74413 * 20 8 7 22 22 H 1.09004 * 109.47071 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47382 * 300.00243 * 1 2 3 24 24 H 1.09006 * 109.46868 * 60.00649 * 1 2 3 25 25 H 1.08001 * 120.02879 * 0.03704 * 4 3 2 26 26 H 1.07999 * 119.94942 * 180.02562 * 7 5 4 27 27 H 1.00898 * 111.00057 * 59.99848 * 11 9 8 28 28 H 1.00900 * 110.99749 * 183.95122 * 11 9 8 29 29 H 0.97002 * 119.99349 * 180.02562 * 15 14 12 30 30 H 1.08998 * 109.46771 * 90.00461 * 21 20 8 31 31 H 1.09006 * 109.46727 * 209.99824 * 21 20 8 32 32 H 1.08992 * 109.47223 * 329.99935 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2914 2.3750 0.0005 5 6 1.9215 3.6054 0.0000 6 17 0.9786 5.0631 0.0000 7 6 3.3038 3.6757 -0.0005 8 6 4.0568 2.5166 0.0000 9 6 5.5617 2.5966 0.0000 10 1 5.9664 1.8292 -0.6598 11 7 5.9816 3.9219 -0.4746 12 6 6.0764 2.3781 1.3995 13 1 5.3830 2.1987 2.2080 14 6 7.4323 2.4071 1.6478 15 7 8.2764 2.6259 0.6634 16 14 8.0702 2.1354 3.3824 17 1 6.9254 1.9125 4.3016 18 1 8.9602 0.9468 3.4020 19 1 8.8321 3.3317 3.8226 20 6 3.4312 1.2846 0.0006 21 6 4.2534 0.0216 -0.0047 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.2128 2.3200 0.0016 26 1 3.7948 4.6377 -0.0005 27 1 5.6189 4.6510 0.1210 28 1 6.9865 3.9790 -0.5451 29 1 9.2304 2.6460 0.8380 30 1 4.4556 -0.2844 1.0217 31 1 3.7037 -0.7676 -0.5176 32 1 5.1954 0.2035 -0.5219 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260037605.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:14 Heat of formation + Delta-G solvation = -45.862200 kcal Electronic energy + Delta-G solvation = -16857.125519 eV Core-core repulsion = 14035.702221 eV Total energy + Delta-G solvation = -2821.423298 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.29127 -38.94898 -37.60755 -36.08198 -33.64967 -33.22664 -30.45392 -28.52124 -28.00546 -27.30482 -24.66842 -22.54474 -21.40715 -18.76339 -18.53765 -17.57427 -16.95938 -16.66966 -16.59711 -15.83702 -15.22735 -14.91243 -14.83463 -14.36366 -13.97423 -13.73006 -13.50818 -13.29490 -12.95912 -12.78833 -12.63843 -12.48381 -12.37718 -12.14399 -12.01206 -11.88039 -11.41996 -11.35764 -10.68833 -9.53518 -9.18290 -9.01352 -8.11624 -6.35364 0.24991 0.48287 1.13284 1.36532 1.40885 1.50878 2.35793 2.39731 2.74231 3.07312 3.86320 4.01497 4.17184 4.29755 4.38563 4.43875 4.46567 4.68691 4.75178 4.80289 4.86911 4.93609 5.17141 5.28649 5.34014 5.41023 5.66317 5.73287 5.95737 6.06468 6.44642 6.64829 6.92626 7.10959 7.39759 8.83812 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.020597 B = 0.007209 C = 0.006016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.116558 B = 3882.918950 C = 4653.097684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.323 6.323 3 C 0.134 3.866 4 C -0.212 4.212 5 C -0.006 4.006 6 Cl -0.065 7.065 7 C -0.145 4.145 8 C -0.010 4.010 9 C 0.247 3.753 10 H 0.030 0.970 11 N -0.844 5.844 12 C -0.547 4.547 13 H 0.044 0.956 14 C 0.027 3.973 15 N -0.914 5.914 16 Si 0.954 3.046 17 H -0.274 1.274 18 H -0.279 1.279 19 H -0.279 1.279 20 C -0.131 4.131 21 C -0.088 4.088 22 H 0.123 0.877 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.160 0.840 26 H 0.131 0.869 27 H 0.318 0.682 28 H 0.348 0.652 29 H 0.268 0.732 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.392 -1.876 -0.832 14.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.237 6.237 3 C 0.089 3.911 4 C -0.231 4.231 5 C -0.032 4.032 6 Cl -0.036 7.036 7 C -0.164 4.164 8 C -0.011 4.011 9 C 0.137 3.863 10 H 0.047 0.953 11 N -0.374 5.374 12 C -0.586 4.586 13 H 0.063 0.937 14 C -0.173 4.173 15 N -0.554 5.554 16 Si 0.780 3.220 17 H -0.199 1.199 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.133 4.133 21 C -0.145 4.145 22 H 0.142 0.858 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.177 0.823 26 H 0.149 0.851 27 H 0.128 0.872 28 H 0.163 0.837 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.618 -2.112 -1.557 14.852 hybrid contribution 0.952 0.321 1.781 2.045 sum -13.666 -1.791 0.224 13.785 Atomic orbital electron populations 1.23394 0.76446 1.05753 1.02264 1.86063 1.23406 1.25626 1.88625 1.18543 0.90951 0.84653 0.96983 1.21048 1.01123 0.89767 1.11149 1.20603 0.91290 0.87535 1.03810 1.98326 1.72278 1.36060 1.96947 1.20804 0.91404 0.99444 1.04728 1.19993 0.96944 0.91403 0.92744 1.17811 0.85818 0.89518 0.93176 0.95260 1.59531 1.18242 1.04585 1.55000 1.21873 0.91983 1.49983 0.94810 0.93741 1.25631 0.96932 0.94289 1.00485 1.69832 1.03067 1.49977 1.32478 0.85575 0.78116 0.77843 0.80500 1.19896 1.20451 1.20479 1.19325 0.91288 0.96268 1.06392 1.20442 0.98408 0.93720 1.01903 0.85840 0.91867 0.91614 0.82271 0.85115 0.87151 0.83735 0.92277 0.92051 0.90729 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.32 -9.35 9.54 -92.33 -0.88 -10.23 16 3 C 0.13 4.57 6.66 22.51 0.15 4.72 16 4 C -0.21 -6.48 8.82 22.39 0.20 -6.28 16 5 C -0.01 -0.19 6.32 22.31 0.14 -0.05 16 6 Cl -0.07 -1.83 28.95 -2.72 -0.08 -1.91 16 7 C -0.14 -5.71 9.03 22.31 0.20 -5.50 16 8 C -0.01 -0.43 5.02 -19.88 -0.10 -0.53 16 9 C 0.25 12.22 2.40 43.43 0.10 12.32 16 10 H 0.03 1.62 6.40 -2.39 -0.02 1.60 16 11 N -0.84 -40.09 8.66 -174.94 -1.52 -41.60 16 12 C -0.55 -28.93 8.48 25.60 0.22 -28.71 16 13 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 14 C 0.03 1.42 5.38 84.65 0.46 1.88 16 15 N -0.91 -49.51 11.54 21.45 0.25 -49.26 16 16 Si 0.95 42.42 29.54 68.60 2.03 44.45 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 18 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 20 C -0.13 -5.28 5.89 -19.76 -0.12 -5.39 16 21 C -0.09 -3.40 9.19 71.24 0.65 -2.75 16 22 H 0.12 1.53 8.14 -2.38 -0.02 1.51 16 23 H 0.06 1.02 7.66 -2.39 -0.02 1.00 16 24 H 0.07 1.03 7.66 -2.38 -0.02 1.01 16 25 H 0.16 3.75 6.30 -2.91 -0.02 3.74 16 26 H 0.13 5.14 6.24 -2.91 -0.02 5.12 16 27 H 0.32 14.34 7.28 -89.70 -0.65 13.69 16 28 H 0.35 17.67 7.07 -89.69 -0.63 17.03 16 29 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 30 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.07 2.49 7.53 -2.38 -0.02 2.47 16 32 H 0.05 2.34 6.12 -2.39 -0.01 2.32 16 Total: -1.00 -57.26 281.14 2.70 -54.57 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: -0.12 Total: 32.90 kcal Atomic # 6 Polarization: -31.92 SS G_CDS: 3.02 Total: -28.90 kcal Atomic # 7 Polarization: -89.59 SS G_CDS: -1.27 Total: -90.86 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -0.88 Total: -10.23 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -0.08 Total: -1.91 kcal Total: -57.26 2.70 -54.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260037605.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.704 kcal (2) G-P(sol) polarization free energy of solvation -57.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds