Wall clock time and date at job start Mon Mar 30 2020 06:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35928 * 116.99512 * 2 1 4 4 C 1.38703 * 120.06520 * 359.73425 * 3 2 1 5 5 C 1.38149 * 119.96118 * 179.69716 * 4 3 2 6 6 C 1.50695 * 119.96445 * 180.29149 * 5 4 3 7 7 H 1.08998 * 109.46993 * 0.27795 * 6 5 4 8 8 C 1.50704 * 109.47027 * 120.27876 * 6 5 4 9 9 H 1.07999 * 119.99703 * 359.97438 * 8 6 5 10 10 C 1.37874 * 119.99900 * 180.02562 * 8 6 5 11 11 N 1.31520 * 120.00467 * 359.97438 * 10 8 6 12 12 Si 1.86802 * 119.99836 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47145 * 59.99837 * 12 10 8 14 14 H 1.48508 * 109.46993 * 179.97438 * 12 10 8 15 15 H 1.48493 * 109.47030 * 299.99587 * 12 10 8 16 16 C 1.53001 * 109.47375 * 240.27687 * 6 5 4 17 17 N 1.46901 * 109.46944 * 65.00279 * 16 6 5 18 18 C 1.38275 * 120.07332 * 0.57267 * 5 4 3 19 19 C 1.38244 * 120.12327 * 359.72092 * 18 5 4 20 20 C 1.38261 * 120.03816 * 359.97438 * 19 18 5 21 21 Cl 1.73607 * 120.03760 * 180.02562 * 20 19 18 22 22 H 1.09002 * 109.47382 * 59.99664 * 1 2 3 23 23 H 1.09001 * 109.46938 * 299.99651 * 1 2 3 24 24 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 25 25 H 1.08005 * 120.01948 * 359.97438 * 4 3 2 26 26 H 0.96996 * 120.00088 * 179.97438 * 11 10 8 27 27 H 1.09002 * 109.47340 * 184.99849 * 16 6 5 28 28 H 1.08999 * 109.46874 * 305.00414 * 16 6 5 29 29 H 1.00901 * 110.99760 * 180.02562 * 17 16 6 30 30 H 1.00904 * 110.99915 * 303.94856 * 17 16 6 31 31 H 1.08003 * 119.94047 * 179.74571 * 18 5 4 32 32 H 1.08002 * 119.98548 * 180.02562 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2112 0.0000 4 6 1.2918 2.3752 -0.0056 5 6 1.9211 3.6051 0.0008 6 6 1.1017 4.8698 0.0014 7 1 0.0417 4.6159 0.0013 8 6 1.4249 5.6771 1.2322 9 1 2.1507 5.3107 1.9431 10 6 0.7932 6.8829 1.4512 11 7 -0.0910 7.3289 0.5858 12 14 1.1933 7.8832 2.9772 13 1 2.6373 8.2294 2.9777 14 1 0.3859 9.1297 2.9778 15 1 0.8749 7.0862 4.1890 16 6 1.4297 5.6906 -1.2475 17 7 1.0042 4.9525 -2.4442 18 6 3.3020 3.6769 0.0007 19 6 4.0569 2.5188 0.0001 20 6 3.4322 1.2853 0.0001 21 17 4.3803 -0.1690 0.0001 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2132 2.3202 -0.0103 26 1 -0.5357 8.1770 0.7401 27 1 0.9046 6.6448 -1.2034 28 1 2.5040 5.8687 -1.2934 29 1 1.2104 5.4740 -3.2830 30 1 1.4281 4.0373 -2.4744 31 1 3.7917 4.6395 0.0015 32 1 5.1354 2.5774 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260043198.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:33 Heat of formation + Delta-G solvation = -46.113923 kcal Electronic energy + Delta-G solvation = -16776.103578 eV Core-core repulsion = 13954.669364 eV Total energy + Delta-G solvation = -2821.434213 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.18038 -38.91065 -37.53446 -36.35777 -34.15461 -32.34768 -31.14465 -29.42653 -27.85538 -25.86775 -23.89316 -23.20839 -21.37672 -18.87209 -18.28167 -17.37471 -17.09108 -16.76578 -16.67966 -16.19345 -15.54452 -15.10843 -14.77512 -14.56581 -14.20332 -13.83891 -13.34440 -13.12259 -12.84003 -12.76874 -12.53028 -12.40908 -12.27268 -12.19581 -11.81891 -11.72928 -11.28628 -11.14445 -10.53637 -9.66850 -9.33404 -9.02574 -8.10870 -6.26360 0.29539 0.43819 1.25210 1.43842 1.44506 1.52087 2.31170 2.41962 2.76498 3.15475 3.85939 3.97975 4.07642 4.31734 4.39779 4.40127 4.44082 4.60410 4.74528 4.75506 4.83602 5.04592 5.20469 5.32452 5.42956 5.61819 5.73832 5.92964 6.01591 6.24530 6.34051 6.54632 6.75000 6.89392 7.42200 8.92318 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.024314 B = 0.006196 C = 0.005924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.326515 B = 4517.805767 C = 4725.361147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.320 6.320 3 C 0.134 3.866 4 C -0.205 4.205 5 C -0.007 4.007 6 C 0.085 3.915 7 H 0.009 0.991 8 C -0.528 4.528 9 H 0.055 0.945 10 C 0.020 3.980 11 N -0.910 5.910 12 Si 0.952 3.048 13 H -0.269 1.269 14 H -0.284 1.284 15 H -0.275 1.275 16 C 0.081 3.919 17 N -0.851 5.851 18 C -0.149 4.149 19 C -0.067 4.067 20 C -0.097 4.097 21 Cl -0.064 7.064 22 H 0.060 0.940 23 H 0.055 0.945 24 H 0.128 0.872 25 H 0.133 0.867 26 H 0.263 0.737 27 H 0.076 0.924 28 H 0.003 0.997 29 H 0.337 0.663 30 H 0.331 0.669 31 H 0.127 0.873 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.934 -11.024 -2.664 12.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.233 6.233 3 C 0.087 3.913 4 C -0.224 4.224 5 C -0.007 4.007 6 C 0.066 3.934 7 H 0.027 0.973 8 C -0.567 4.567 9 H 0.073 0.927 10 C -0.180 4.180 11 N -0.548 5.548 12 Si 0.778 3.222 13 H -0.194 1.194 14 H -0.209 1.209 15 H -0.200 1.200 16 C -0.050 4.050 17 N -0.380 5.380 18 C -0.168 4.168 19 C -0.086 4.086 20 C -0.124 4.124 21 Cl -0.035 7.035 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.146 0.854 25 H 0.151 0.849 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.021 0.979 29 H 0.149 0.851 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.227 -11.134 -2.390 12.146 hybrid contribution 0.705 0.869 0.549 1.247 sum 4.932 -10.265 -1.841 11.536 Atomic orbital electron populations 1.23339 0.76559 1.05628 1.01982 1.86076 1.23207 1.25569 1.88457 1.18709 0.90685 0.85047 0.96822 1.21186 1.00338 0.91059 1.09842 1.20321 0.94554 0.95055 0.90768 1.17727 0.93349 0.88779 0.93504 0.97288 1.21315 1.24090 1.04697 1.06563 0.92663 1.25680 0.94665 0.98525 0.99089 1.70004 1.27111 1.21107 1.36597 0.85704 0.78475 0.77970 0.80098 1.19423 1.20943 1.20044 1.21761 0.95274 0.98924 0.89032 1.58823 1.67381 1.06884 1.04936 1.20962 0.93263 0.98267 1.04261 1.21039 1.01108 0.89010 0.97432 1.20146 0.88560 0.88724 1.14970 1.98312 1.71479 1.36352 1.97402 0.92088 0.92616 0.85366 0.84919 0.92789 0.90566 0.97865 0.85064 0.85768 0.85537 0.82508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.81 113.37 1.11 1.54 16 2 O -0.32 -9.54 9.96 -92.74 -0.92 -10.46 16 3 C 0.13 4.47 6.68 22.52 0.15 4.62 16 4 C -0.21 -7.53 8.66 22.36 0.19 -7.33 16 5 C -0.01 -0.27 3.77 -19.88 -0.07 -0.34 16 6 C 0.09 4.10 2.16 -12.29 -0.03 4.07 16 7 H 0.01 0.49 7.87 -2.39 -0.02 0.47 16 8 C -0.53 -27.76 8.24 25.60 0.21 -27.55 16 9 H 0.06 2.88 7.60 -2.91 -0.02 2.86 16 10 C 0.02 1.07 5.29 84.65 0.45 1.52 16 11 N -0.91 -50.56 11.30 21.45 0.24 -50.32 16 12 Si 0.95 42.12 29.54 68.60 2.03 44.15 16 13 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 14 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 15 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 16 C 0.08 3.67 5.98 86.30 0.52 4.19 16 17 N -0.85 -32.65 9.62 -186.71 -1.80 -34.44 16 18 C -0.15 -5.43 8.65 22.28 0.19 -5.24 16 19 C -0.07 -2.09 9.83 22.28 0.22 -1.88 16 20 C -0.10 -3.09 6.33 22.41 0.14 -2.95 16 21 Cl -0.06 -1.79 28.51 -2.72 -0.08 -1.87 16 22 H 0.06 1.33 7.65 -2.39 -0.02 1.31 16 23 H 0.06 1.27 7.67 -2.39 -0.02 1.25 16 24 H 0.13 2.01 8.14 -2.38 -0.02 1.99 16 25 H 0.13 4.72 6.19 -2.91 -0.02 4.70 16 26 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 27 H 0.08 4.00 5.95 -2.39 -0.01 3.99 16 28 H 0.00 0.14 7.22 -2.39 -0.02 0.12 16 29 H 0.34 11.17 9.08 -89.69 -0.81 10.35 16 30 H 0.33 11.80 8.07 -89.69 -0.72 11.08 16 31 H 0.13 4.67 7.54 -2.91 -0.02 4.64 16 32 H 0.16 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -58.39 284.99 2.18 -56.22 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: -0.38 Total: 26.07 kcal Atomic # 6 Polarization: -32.42 SS G_CDS: 3.08 Total: -29.34 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -1.55 Total: -84.76 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -0.92 Total: -10.46 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -0.08 Total: -1.87 kcal Total: -58.39 2.18 -56.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260043198.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.103 kcal (2) G-P(sol) polarization free energy of solvation -58.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds