Wall clock time and date at job start Mon Mar 30 2020 06:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.34693 * 2 1 4 4 C 1.52987 * 109.39788 * 119.80901 * 2 1 3 5 5 C 1.53424 * 109.82922 * 48.16371 * 4 2 1 6 6 C 1.50797 * 108.11109 * 50.65287 * 5 4 2 7 7 C 1.34095 * 128.94417 * 163.27003 * 6 5 4 8 8 Cl 1.73597 * 125.98355 * 0.31298 * 7 6 5 9 9 N 1.36669 * 108.03749 * 180.31264 * 7 6 5 10 10 H 0.96997 * 125.60598 * 179.97438 * 9 7 6 11 11 C 1.36804 * 108.78711 * 359.93393 * 9 7 6 12 12 C 1.33944 * 108.06523 * 359.95140 * 11 9 7 13 13 C 1.50801 * 128.94559 * 180.18423 * 12 11 9 14 14 O 1.42897 * 109.73275 * 283.13308 * 13 12 11 15 15 C 1.50707 * 109.73018 * 43.77081 * 13 12 11 16 16 H 1.08002 * 119.99615 * 5.02315 * 15 13 12 17 17 C 1.37871 * 119.99716 * 185.29024 * 15 13 12 18 18 N 1.31508 * 120.00157 * 6.41405 * 17 15 13 19 19 Si 1.86802 * 119.99898 * 186.40748 * 17 15 13 20 20 H 1.48507 * 109.47095 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47012 * 119.99916 * 19 17 15 22 22 H 1.48496 * 109.47598 * 240.00419 * 19 17 15 23 23 H 1.08996 * 109.47003 * 179.82230 * 1 2 3 24 24 H 1.08995 * 109.47485 * 299.82188 * 1 2 3 25 25 H 1.08999 * 109.46792 * 59.82234 * 1 2 3 26 26 H 1.09000 * 109.41928 * 288.05482 * 4 2 1 27 27 H 1.09001 * 109.34258 * 168.23381 * 4 2 1 28 28 H 1.08996 * 109.73791 * 291.00084 * 5 4 2 29 29 H 1.08997 * 109.73832 * 170.30476 * 5 4 2 30 30 H 1.07996 * 125.96590 * 179.97438 * 11 9 7 31 31 H 0.96701 * 114.00178 * 60.64119 * 14 13 12 32 32 H 0.97003 * 119.99920 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8912 1.0284 0.0000 4 6 2.0382 -0.7173 1.2521 5 6 1.3030 -2.0534 1.4209 6 6 1.3795 -2.7991 0.1125 7 6 1.1579 -4.0990 -0.1310 8 17 0.7029 -5.2936 1.0435 9 7 1.3531 -4.3188 -1.4657 10 1 1.2604 -5.1724 -1.9170 11 6 1.6998 -3.1368 -2.0608 12 6 1.7217 -2.1871 -1.1165 13 6 2.0400 -0.7196 -1.2553 14 8 3.4528 -0.5414 -1.3742 15 6 1.3526 -0.1630 -2.4755 16 1 0.6793 -0.7850 -3.0468 17 6 1.5874 1.1383 -2.8656 18 7 2.5037 1.8539 -2.2509 19 14 0.6041 1.8851 -4.2674 20 1 -0.3577 0.8803 -4.7876 21 1 -0.1393 3.0719 -3.7733 22 1 1.5272 2.2968 -5.3553 23 1 -0.3633 -1.0276 -0.0032 24 1 -0.3634 0.5110 0.8915 25 1 -0.3633 0.5166 -0.8884 26 1 1.8580 -0.0918 2.1264 27 1 3.1078 -0.9024 1.1532 28 1 0.2602 -1.8696 1.6793 29 1 1.7798 -2.6392 2.2067 30 1 1.9174 -2.9942 -3.1090 31 1 3.8413 -0.9808 -2.1431 32 1 2.6692 2.7694 -2.5256 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260070528.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:59 Heat of formation + Delta-G solvation = -33.437723 kcal Electronic energy + Delta-G solvation = -17755.930749 eV Core-core repulsion = 14935.046216 eV Total energy + Delta-G solvation = -2820.884532 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.29121 -38.74809 -37.48420 -35.82472 -34.11479 -31.89347 -31.17133 -28.63569 -27.50831 -25.99749 -23.91327 -21.45762 -21.09201 -18.92611 -18.58550 -18.45070 -16.56862 -16.23963 -15.92189 -15.66067 -15.23574 -14.94810 -14.45237 -14.24509 -13.47009 -13.24842 -13.17700 -12.88039 -12.82948 -12.59049 -12.48674 -12.31359 -12.08949 -12.03415 -11.91300 -11.35296 -11.12253 -10.54164 -10.39224 -9.90816 -9.30218 -8.82346 -7.90687 -6.10936 0.86892 1.26197 1.41817 1.47120 1.54911 2.08417 2.50247 2.71360 3.31653 4.08117 4.16036 4.39070 4.43212 4.56491 4.78143 4.85343 4.92759 5.05285 5.07315 5.17392 5.27058 5.29915 5.42706 5.54970 5.78146 5.81058 5.91266 5.95569 6.15983 6.29998 6.44442 6.74203 6.93786 7.52983 7.80237 9.08403 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.030738 B = 0.007829 C = 0.007171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.715233 B = 3575.609477 C = 3903.473439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.062 4.062 3 H 0.042 0.958 4 C -0.105 4.105 5 C -0.038 4.038 6 C -0.147 4.147 7 C 0.048 3.952 8 Cl -0.019 7.019 9 N -0.552 5.552 10 H 0.428 0.572 11 C 0.017 3.983 12 C -0.173 4.173 13 C 0.316 3.684 14 O -0.568 6.568 15 C -0.545 4.545 16 H 0.051 0.949 17 C 0.039 3.961 18 N -0.883 5.883 19 Si 0.931 3.069 20 H -0.268 1.268 21 H -0.287 1.287 22 H -0.285 1.285 23 H 0.051 0.949 24 H 0.047 0.953 25 H 0.038 0.962 26 H 0.062 0.938 27 H 0.042 0.958 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.181 0.819 31 H 0.351 0.649 32 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.319 -11.758 3.808 12.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.081 4.081 3 H 0.061 0.939 4 C -0.143 4.143 5 C -0.075 4.075 6 C -0.155 4.155 7 C -0.089 4.089 8 Cl 0.009 6.991 9 N -0.154 5.154 10 H 0.267 0.733 11 C -0.113 4.113 12 C -0.180 4.180 13 C 0.276 3.724 14 O -0.371 6.371 15 C -0.584 4.584 16 H 0.069 0.931 17 C -0.164 4.164 18 N -0.520 5.520 19 Si 0.758 3.242 20 H -0.193 1.193 21 H -0.213 1.213 22 H -0.211 1.211 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.198 0.802 31 H 0.195 0.805 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.390 -11.486 4.414 12.763 hybrid contribution -0.351 -0.024 -1.611 1.649 sum -3.741 -11.510 2.803 12.423 Atomic orbital electron populations 1.21570 0.95214 1.00686 0.99749 1.20775 0.95147 0.98606 0.93610 0.93909 1.21533 0.99079 0.96098 0.97567 1.20045 1.00590 0.94367 0.92537 1.19414 1.07933 0.91112 0.97082 1.20156 1.14947 0.90416 0.83334 1.98331 1.91281 1.56006 1.53465 1.41861 1.57059 1.10931 1.05502 0.73294 1.21569 1.07023 0.83681 0.99046 1.20586 1.07036 0.97880 0.92512 1.17128 0.78453 0.84317 0.92515 1.86475 1.23801 1.77958 1.48865 1.21748 1.27429 0.97300 1.11880 0.93107 1.25568 0.95080 0.97737 0.97983 1.70265 1.31209 1.08826 1.41666 0.85945 0.79252 0.78593 0.80376 1.19274 1.21289 1.21121 0.92996 0.93402 0.94302 0.91897 0.93916 0.90581 0.90722 0.80210 0.80513 0.93762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.88 7.97 71.98 0.57 -4.30 16 2 C -0.06 -2.90 2.29 -10.66 -0.02 -2.92 16 3 H 0.04 2.32 7.14 -2.39 -0.02 2.30 16 4 C -0.11 -4.16 5.51 30.73 0.17 -3.99 16 5 C -0.04 -1.29 5.54 30.02 0.17 -1.13 16 6 C -0.15 -5.37 5.09 -19.98 -0.10 -5.48 16 7 C 0.05 1.50 7.77 82.99 0.64 2.14 16 8 Cl -0.02 -0.48 29.19 -2.72 -0.08 -0.56 16 9 N -0.55 -15.53 6.10 -186.31 -1.14 -16.67 16 10 H 0.43 8.69 8.96 -92.71 -0.83 7.86 16 11 C 0.02 0.57 11.29 82.94 0.94 1.51 16 12 C -0.17 -7.10 4.54 -20.01 -0.09 -7.19 16 13 C 0.32 15.11 0.47 -12.11 -0.01 15.10 16 14 O -0.57 -29.12 11.49 -148.98 -1.71 -30.83 16 15 C -0.55 -28.04 6.29 25.60 0.16 -27.88 16 16 H 0.05 2.60 7.51 -2.91 -0.02 2.58 16 17 C 0.04 2.07 5.24 84.65 0.44 2.51 16 18 N -0.88 -50.16 11.39 21.44 0.24 -49.91 16 19 Si 0.93 42.37 29.54 68.60 2.03 44.40 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 23 H 0.05 2.09 5.55 -2.39 -0.01 2.08 16 24 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.04 1.80 6.97 -2.39 -0.02 1.78 16 26 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.04 1.83 7.74 -2.39 -0.02 1.81 16 28 H 0.08 2.43 6.97 -2.39 -0.02 2.41 16 29 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.18 5.66 8.06 -2.91 -0.02 5.64 16 31 H 0.35 16.39 9.05 -74.06 -0.67 15.72 16 32 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -61.24 271.70 1.88 -59.37 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: -0.34 Total: 25.84 kcal Atomic # 6 Polarization: -34.51 SS G_CDS: 2.87 Total: -31.63 kcal Atomic # 7 Polarization: -65.69 SS G_CDS: -0.89 Total: -66.58 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -1.71 Total: -30.83 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -0.08 Total: -0.56 kcal Total: -61.24 1.88 -59.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260070528.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.928 kcal (2) G-P(sol) polarization free energy of solvation -61.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds