Wall clock time and date at job start Mon Mar 30 2020 06:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.83387 * 2 1 4 4 C 1.54475 * 110.95069 * 123.73341 * 2 1 3 5 5 C 1.51189 * 104.92024 * 92.60903 * 4 2 1 6 6 C 1.41541 * 142.38261 * 196.84567 * 5 4 2 7 7 C 1.34588 * 106.79275 * 179.97438 * 6 5 4 8 8 Cl 1.73598 * 125.79563 * 180.02562 * 7 6 5 9 9 O 1.34187 * 108.40280 * 0.02562 * 7 6 5 10 10 C 1.34267 * 110.58520 * 16.84765 * 5 4 2 11 11 C 1.51445 * 110.25671 * 0.02562 * 10 5 4 12 12 C 1.50696 * 110.33767 * 102.00334 * 11 10 5 13 13 H 1.08001 * 120.00086 * 6.50141 * 12 11 10 14 14 C 1.37874 * 120.00017 * 186.50467 * 12 11 10 15 15 N 1.31515 * 120.00437 * 353.49399 * 14 12 11 16 16 Si 1.86800 * 120.00022 * 173.49604 * 14 12 11 17 17 H 1.48500 * 109.47268 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47125 * 120.00008 * 16 14 12 19 19 H 1.48507 * 109.47303 * 239.99991 * 16 14 12 20 20 C 1.52997 * 110.33799 * 224.24732 * 11 10 5 21 21 N 1.46906 * 109.46886 * 290.28503 * 20 11 10 22 22 H 1.08997 * 109.47325 * 297.71612 * 1 2 3 23 23 H 1.08995 * 109.47202 * 57.72213 * 1 2 3 24 24 H 1.09007 * 109.46415 * 177.71995 * 1 2 3 25 25 H 1.09003 * 110.34934 * 211.47492 * 4 2 1 26 26 H 1.09008 * 110.34993 * 333.74721 * 4 2 1 27 27 H 1.08000 * 126.59870 * 359.97438 * 6 5 4 28 28 H 0.96995 * 120.00658 * 180.02562 * 15 14 12 29 29 H 1.09000 * 109.47100 * 50.28200 * 20 11 10 30 30 H 1.08998 * 109.47471 * 170.28212 * 20 11 10 31 31 H 1.00902 * 110.99958 * 61.53782 * 21 20 11 32 32 H 1.00902 * 110.99678 * 185.49086 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9177 1.0187 0.0000 4 6 2.0824 -0.8011 1.1997 5 6 2.2837 -2.2035 0.6718 6 6 2.4760 -3.5420 1.0899 7 6 2.5821 -4.2866 -0.0262 8 17 2.8279 -6.0042 -0.0814 9 8 2.4656 -3.4757 -1.0890 10 6 2.2839 -2.2070 -0.6708 11 6 2.0827 -0.8019 -1.1989 12 6 3.3957 -0.2216 -1.6572 13 1 4.2814 -0.8393 -1.6777 14 6 3.4664 1.0981 -2.0502 15 7 2.3682 1.8149 -2.1479 16 14 5.1222 1.8678 -2.4441 17 1 6.1947 0.8578 -2.2575 18 1 5.1261 2.3403 -3.8519 19 1 5.3624 3.0177 -1.5355 20 6 1.0717 -0.8051 -2.3472 21 7 1.6645 -1.4627 -3.5196 22 1 -0.3634 0.4779 0.9097 23 1 -0.3633 0.5488 -0.8688 24 1 -0.3632 -1.0270 -0.0409 25 1 3.0319 -0.3809 1.5313 26 1 1.3619 -0.8038 2.0178 27 1 2.5277 -3.8973 2.1085 28 1 2.4179 2.7432 -2.4248 29 1 0.1762 -1.3460 -2.0414 30 1 0.8072 0.2213 -2.6014 31 1 1.8954 -2.4238 -3.3168 32 1 1.0514 -1.3989 -4.3184 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260079176.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:38 Heat of formation + Delta-G solvation = 12.321114 kcal Electronic energy + Delta-G solvation = -17638.678571 eV Core-core repulsion = 14819.778291 eV Total energy + Delta-G solvation = -2818.900280 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.67467 -39.40356 -37.90804 -35.32199 -33.94034 -32.96466 -30.62070 -29.21172 -27.34057 -25.64029 -23.68185 -22.32954 -20.88078 -20.40899 -18.72441 -17.41671 -17.03698 -16.77496 -16.25810 -15.62949 -15.50302 -15.03691 -14.52140 -13.96175 -13.89480 -13.65538 -13.18050 -13.09424 -12.94179 -12.78031 -12.63889 -12.47903 -12.42763 -12.12080 -11.57007 -11.39068 -11.29237 -11.01827 -10.42970 -10.31283 -9.14647 -8.98011 -7.97526 -6.04895 0.19846 0.72036 1.43866 1.48677 1.56389 1.67848 2.27047 2.53568 3.29655 3.90148 4.04972 4.11259 4.20752 4.44833 4.51743 4.60040 4.74299 4.88144 4.95018 5.04866 5.11376 5.11541 5.24908 5.37511 5.49275 5.60454 5.75173 5.82350 5.99637 6.24996 6.33255 6.71222 6.84200 6.94349 7.57069 9.04207 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.023798 B = 0.007957 C = 0.007429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.288479 B = 3518.163284 C = 3768.131774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.069 4.069 3 H 0.086 0.914 4 C -0.036 4.036 5 C -0.229 4.229 6 C -0.146 4.146 7 C -0.015 4.015 8 Cl 0.033 6.967 9 O -0.180 6.180 10 C 0.005 3.995 11 C 0.165 3.835 12 C -0.487 4.487 13 H 0.028 0.972 14 C 0.044 3.956 15 N -0.894 5.894 16 Si 0.939 3.061 17 H -0.284 1.284 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.086 3.914 21 N -0.836 5.836 22 H 0.066 0.934 23 H 0.049 0.951 24 H 0.040 0.960 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.179 0.821 28 H 0.261 0.739 29 H -0.007 1.007 30 H 0.084 0.916 31 H 0.324 0.676 32 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.382 -7.697 5.772 10.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.089 4.089 3 H 0.104 0.896 4 C -0.073 4.073 5 C -0.230 4.230 6 C -0.166 4.166 7 C -0.090 4.090 8 Cl 0.062 6.938 9 O -0.078 6.078 10 C -0.046 4.046 11 C 0.164 3.836 12 C -0.525 4.525 13 H 0.046 0.954 14 C -0.156 4.156 15 N -0.532 5.532 16 Si 0.767 3.233 17 H -0.209 1.209 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.045 4.045 21 N -0.364 5.364 22 H 0.085 0.915 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.085 0.915 26 H 0.103 0.897 27 H 0.197 0.803 28 H 0.070 0.930 29 H 0.011 0.989 30 H 0.102 0.898 31 H 0.136 0.864 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.829 -7.204 5.494 9.492 hybrid contribution 0.332 -0.598 -0.479 0.835 sum -2.497 -7.802 5.015 9.605 Atomic orbital electron populations 1.21692 0.94799 1.00250 1.01630 1.21859 0.94950 0.99578 0.92472 0.89625 1.20556 1.00961 0.87742 0.98011 1.21467 1.10183 0.96216 0.95180 1.21044 1.06036 0.90531 0.98983 1.22479 1.14501 0.86315 0.85698 1.98372 1.95466 1.01793 1.98157 1.83698 1.71679 1.17072 1.35378 1.24577 0.99917 0.84043 0.96022 1.17916 0.95050 0.78399 0.92259 1.20640 0.92918 0.95247 1.43721 0.95369 1.25146 0.98413 0.97206 0.94858 1.69925 1.26927 1.08660 1.47703 0.85821 0.81729 0.78258 0.77538 1.20929 1.21338 1.20255 1.21856 0.92659 0.98760 0.91186 1.58470 1.50388 1.20334 1.07223 0.91494 0.93145 0.94100 0.91460 0.89692 0.80315 0.92990 0.98877 0.89827 0.86398 0.85666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 7.95 71.98 0.57 -3.97 16 2 C -0.07 -2.89 2.70 -9.80 -0.03 -2.91 16 3 H 0.09 4.01 6.38 -2.39 -0.02 3.99 16 4 C -0.04 -1.32 6.33 30.50 0.19 -1.13 16 5 C -0.23 -9.05 6.96 -19.80 -0.14 -9.19 16 6 C -0.15 -4.96 10.89 22.25 0.24 -4.72 16 7 C -0.02 -0.53 7.93 66.98 0.53 0.00 16 8 Cl 0.03 0.92 29.30 -2.72 -0.08 0.84 16 9 O -0.18 -7.60 10.03 -6.48 -0.06 -7.66 16 10 C 0.01 0.22 6.31 25.02 0.16 0.38 16 11 C 0.16 7.63 0.26 -52.94 -0.01 7.62 16 12 C -0.49 -25.74 7.48 25.60 0.19 -25.55 16 13 H 0.03 1.61 7.78 -2.91 -0.02 1.58 16 14 C 0.04 2.28 4.89 84.65 0.41 2.70 16 15 N -0.89 -46.10 10.15 21.45 0.22 -45.88 16 16 Si 0.94 43.07 29.54 68.60 2.03 45.10 16 17 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 18 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 19 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 20 C 0.09 3.87 4.28 86.30 0.37 4.24 16 21 N -0.84 -36.03 8.99 -186.71 -1.68 -37.71 16 22 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.05 1.90 7.02 -2.39 -0.02 1.88 16 24 H 0.04 1.43 7.59 -2.38 -0.02 1.41 16 25 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 26 H 0.08 2.63 7.91 -2.38 -0.02 2.61 16 27 H 0.18 4.71 8.06 -2.91 -0.02 4.68 16 28 H 0.26 13.00 8.31 -92.71 -0.77 12.23 16 29 H -0.01 -0.28 6.93 -2.39 -0.02 -0.30 16 30 H 0.08 4.10 5.97 -2.39 -0.01 4.09 16 31 H 0.32 13.69 7.91 -89.69 -0.71 12.98 16 32 H 0.33 12.36 9.08 -89.69 -0.81 11.55 16 Total: -1.00 -55.83 274.51 2.56 -53.28 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: -0.36 Total: 24.57 kcal Atomic # 6 Polarization: -35.02 SS G_CDS: 2.49 Total: -32.53 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -1.46 Total: -83.59 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.06 Total: -7.66 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 17 Polarization: 0.92 SS G_CDS: -0.08 Total: 0.84 kcal Total: -55.83 2.56 -53.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260079176.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.599 kcal (2) G-P(sol) polarization free energy of solvation -55.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds