Wall clock time and date at job start Mon Mar 30 2020 06:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38170 * 120.01668 * 2 1 4 4 C 1.38218 * 120.06909 * 180.02562 * 3 2 1 5 5 C 1.38410 * 120.10060 * 0.02562 * 4 3 2 6 6 Cl 1.73595 * 119.98735 * 180.02562 * 5 4 3 7 7 C 1.38241 * 120.02588 * 359.75792 * 5 4 3 8 8 C 1.50701 * 120.03366 * 180.25522 * 7 5 4 9 9 H 1.08999 * 109.46709 * 13.50694 * 8 7 5 10 10 N 1.46894 * 109.46788 * 133.49741 * 8 7 5 11 11 C 1.52996 * 109.47317 * 253.50058 * 8 7 5 12 12 C 1.50702 * 109.46968 * 175.00102 * 11 8 7 13 13 H 1.08003 * 120.00165 * 359.97438 * 12 11 8 14 14 C 1.37873 * 119.99994 * 180.02562 * 12 11 8 15 15 N 1.31516 * 120.00030 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00210 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46964 * 89.99798 * 16 14 12 18 18 H 1.48500 * 109.47428 * 210.00087 * 16 14 12 19 19 H 1.48500 * 109.46949 * 329.99829 * 16 14 12 20 20 C 1.38717 * 120.01449 * 180.02562 * 2 1 3 21 21 O 1.35906 * 120.04941 * 359.97438 * 20 2 1 22 22 H 1.09003 * 109.47378 * 269.97960 * 1 2 3 23 23 H 1.09004 * 109.47294 * 29.97511 * 1 2 3 24 24 H 1.09004 * 109.47440 * 149.97998 * 1 2 3 25 25 H 1.08001 * 119.96525 * 0.02562 * 3 2 1 26 26 H 1.08005 * 119.95213 * 180.02562 * 4 3 2 27 27 H 1.00907 * 111.00065 * 67.88665 * 10 8 7 28 28 H 1.00902 * 111.00359 * 191.83736 * 10 8 7 29 29 H 1.09002 * 109.47253 * 294.99952 * 11 8 7 30 30 H 1.09001 * 109.46963 * 55.00031 * 11 8 7 31 31 H 0.97004 * 120.00025 * 179.97438 * 15 14 12 32 32 H 0.96688 * 114.00055 * 89.99954 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1964 0.0000 4 6 3.5803 1.1977 -0.0005 5 6 4.2756 0.0008 -0.0016 6 17 6.0115 0.0059 -0.0016 7 6 3.5881 -1.1985 0.0029 8 6 4.3450 -2.5017 0.0076 9 1 5.3915 -2.3131 0.2467 10 7 3.7666 -3.4001 1.0156 11 6 4.2466 -3.1535 -1.3731 12 6 5.1031 -4.3931 -1.4055 13 1 5.6620 -4.6863 -0.5291 14 6 5.1740 -5.1522 -2.5543 15 7 4.4937 -4.7948 -3.6216 16 14 6.2351 -6.6891 -2.5943 17 1 5.4271 -7.8596 -2.1676 18 1 6.7352 -6.9096 -3.9750 19 1 7.3865 -6.5197 -1.6719 20 6 2.2008 -1.2011 -0.0005 21 8 1.5226 -2.3789 -0.0005 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3634 0.8902 -0.5135 24 1 -0.3634 -0.8898 -0.5142 25 1 1.6579 2.1315 0.0004 26 1 4.1187 2.1339 -0.0001 27 1 2.8384 -3.6928 0.7492 28 1 4.3649 -4.1967 1.1759 29 1 3.2098 -3.4229 -1.5747 30 1 4.5938 -2.4520 -2.1316 31 1 4.5439 -5.3287 -4.4299 32 1 1.3260 -2.7195 -0.8838 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260166269.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:25 Heat of formation + Delta-G solvation = -62.591093 kcal Electronic energy + Delta-G solvation = -16928.170618 eV Core-core repulsion = 14106.021901 eV Total energy + Delta-G solvation = -2822.148717 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.20823 -38.00234 -37.33815 -36.80413 -34.57862 -32.96003 -30.85066 -29.85766 -27.60700 -26.29927 -23.86415 -22.59957 -21.31522 -19.18180 -18.71501 -17.51011 -16.95450 -16.62908 -16.31564 -15.52035 -15.32908 -14.85139 -14.38791 -14.33082 -14.13748 -13.78215 -13.68279 -13.37202 -13.09393 -12.95576 -12.68199 -12.48655 -12.31281 -12.03911 -11.81224 -11.72293 -11.49008 -10.93059 -10.60462 -9.68602 -9.38103 -9.24145 -8.23154 -6.33695 0.15190 0.28461 1.20818 1.37890 1.38788 1.49358 2.37380 2.54494 3.10284 3.29029 3.73752 3.92599 3.96668 4.28778 4.36358 4.61639 4.62828 4.72016 4.82109 4.87164 4.96650 5.20171 5.26194 5.27973 5.35991 5.51619 5.60158 5.73040 5.80606 6.16361 6.46844 6.75779 6.80009 6.85871 7.35370 8.87600 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.023034 B = 0.007119 C = 0.006054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.284983 B = 3932.081262 C = 4623.885951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.113 4.113 3 C -0.099 4.099 4 C -0.116 4.116 5 C -0.047 4.047 6 Cl -0.075 7.075 7 C -0.096 4.096 8 C 0.137 3.863 9 H 0.069 0.931 10 N -0.830 5.830 11 C 0.020 3.980 12 C -0.535 4.535 13 H 0.058 0.942 14 C 0.008 3.992 15 N -0.926 5.926 16 Si 0.959 3.041 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.268 1.268 20 C 0.113 3.887 21 O -0.489 6.489 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.066 0.934 25 H 0.172 0.828 26 H 0.157 0.843 27 H 0.346 0.654 28 H 0.337 0.663 29 H 0.004 0.996 30 H -0.018 1.018 31 H 0.263 0.737 32 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.493 11.563 6.333 14.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.113 4.113 3 C -0.117 4.117 4 C -0.135 4.135 5 C -0.074 4.074 6 Cl -0.046 7.046 7 C -0.098 4.098 8 C 0.025 3.975 9 H 0.087 0.913 10 N -0.362 5.362 11 C -0.018 4.018 12 C -0.573 4.573 13 H 0.076 0.924 14 C -0.191 4.191 15 N -0.566 5.566 16 Si 0.785 3.215 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.192 1.192 20 C 0.068 3.932 21 O -0.300 6.300 22 H 0.097 0.903 23 H 0.108 0.892 24 H 0.085 0.915 25 H 0.189 0.811 26 H 0.175 0.825 27 H 0.163 0.837 28 H 0.148 0.852 29 H 0.022 0.978 30 H 0.000 1.000 31 H 0.072 0.928 32 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -6.301 12.174 7.266 15.515 hybrid contribution 0.983 -1.860 -1.731 2.725 sum -5.318 10.314 5.534 12.856 Atomic orbital electron populations 1.20692 0.88200 1.03754 1.03230 1.20650 0.98574 0.91844 1.00280 1.21215 0.92689 0.98467 0.99352 1.21302 0.94980 0.96393 1.00820 1.20862 0.84465 0.94884 1.07164 1.98335 1.10647 1.98644 1.97011 1.20360 0.94349 0.94893 1.00207 1.20233 0.96492 0.89011 0.91792 0.91281 1.59219 1.07880 1.22498 1.46612 1.19537 0.95726 0.94301 0.92243 1.21484 1.28060 1.09495 0.98301 0.92408 1.25839 0.96939 1.01040 0.95255 1.70076 1.42992 1.40458 1.03097 0.85529 0.79148 0.79544 0.77320 1.19654 1.21019 1.19201 1.18081 0.88057 0.86182 1.00910 1.84684 1.75276 1.35891 1.34156 0.90279 0.89203 0.91532 0.81065 0.82511 0.83748 0.85151 0.97820 0.99983 0.92835 0.74690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.97 9.79 71.23 0.70 -1.27 16 2 C -0.11 -2.97 5.89 -19.77 -0.12 -3.09 16 3 C -0.10 -2.26 9.70 22.25 0.22 -2.04 16 4 C -0.12 -3.07 9.83 22.31 0.22 -2.86 16 5 C -0.05 -1.60 6.31 22.31 0.14 -1.46 16 6 Cl -0.08 -2.59 27.06 -2.72 -0.07 -2.67 16 7 C -0.10 -3.69 4.96 -19.75 -0.10 -3.79 16 8 C 0.14 5.95 2.67 44.17 0.12 6.06 16 9 H 0.07 3.17 6.33 -2.39 -0.02 3.15 16 10 N -0.83 -33.75 8.91 -171.82 -1.53 -35.28 16 11 C 0.02 1.05 4.42 29.85 0.13 1.18 16 12 C -0.54 -29.56 8.66 25.60 0.22 -29.34 16 13 H 0.06 3.10 7.19 -2.91 -0.02 3.08 16 14 C 0.01 0.44 5.46 84.65 0.46 0.90 16 15 N -0.93 -54.77 13.29 21.45 0.28 -54.49 16 16 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 20 C 0.11 3.80 6.44 22.50 0.14 3.95 16 21 O -0.49 -15.90 9.10 -92.49 -0.84 -16.74 16 22 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 23 H 0.09 1.26 8.09 -2.38 -0.02 1.24 16 24 H 0.07 1.32 7.53 -2.38 -0.02 1.30 16 25 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 26 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 27 H 0.35 13.79 6.29 -89.69 -0.56 13.23 16 28 H 0.34 13.68 8.16 -89.69 -0.73 12.95 16 29 H 0.00 0.19 6.79 -2.39 -0.02 0.17 16 30 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 31 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 32 H 0.40 11.48 8.21 -74.07 -0.61 10.87 16 Total: -1.00 -65.03 282.64 1.27 -63.76 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: -0.73 Total: 31.30 kcal Atomic # 6 Polarization: -33.89 SS G_CDS: 2.14 Total: -31.75 kcal Atomic # 7 Polarization: -88.52 SS G_CDS: -1.25 Total: -89.77 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.84 Total: -16.74 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 17 Polarization: -2.59 SS G_CDS: -0.07 Total: -2.67 kcal Total: -65.03 1.27 -63.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260166269.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.164 kcal (2) G-P(sol) polarization free energy of solvation -65.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds