Wall clock time and date at job start Mon Mar 30 2020 06:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48537 * 111.00088 * 2 1 4 4 C 1.54938 * 103.22729 * 200.28060 * 3 2 1 5 5 C 1.54593 * 102.92221 * 37.41462 * 4 3 2 6 6 H 1.08995 * 110.30954 * 96.95507 * 5 4 3 7 7 C 1.50696 * 110.39286 * 219.08686 * 5 4 3 8 8 H 1.07999 * 120.00622 * 115.76048 * 7 5 4 9 9 C 1.37884 * 119.99682 * 295.76481 * 7 5 4 10 10 N 1.31512 * 120.00136 * 359.97438 * 9 7 5 11 11 Si 1.86798 * 120.00020 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.47016 * 89.99664 * 11 9 7 13 13 H 1.48494 * 109.47420 * 209.99729 * 11 9 7 14 14 H 1.48497 * 109.47247 * 330.00170 * 11 9 7 15 15 C 1.47899 * 111.00104 * 242.60588 * 2 1 3 16 16 H 1.08999 * 110.08204 * 26.39421 * 15 2 1 17 17 C 1.50707 * 109.91599 * 265.19687 * 15 2 1 18 18 C 1.34484 * 125.77781 * 142.40590 * 17 15 2 19 19 C 1.41408 * 106.85012 * 180.02562 * 18 17 15 20 20 C 1.34652 * 106.83150 * 0.02562 * 19 18 17 21 21 Cl 1.73602 * 125.80607 * 179.97438 * 20 19 18 22 22 O 1.34304 * 108.39541 * 359.97438 * 20 19 18 23 23 H 1.08996 * 109.47591 * 177.39997 * 1 2 3 24 24 H 1.09006 * 109.47130 * 297.39699 * 1 2 3 25 25 H 1.08998 * 109.47186 * 57.39675 * 1 2 3 26 26 H 1.08994 * 110.66893 * 81.84323 * 3 2 1 27 27 H 1.09005 * 110.80900 * 318.78348 * 3 2 1 28 28 H 1.08997 * 110.71892 * 279.05237 * 4 3 2 29 29 H 1.09003 * 110.87589 * 155.84205 * 4 3 2 30 30 H 0.96992 * 120.00332 * 179.97438 * 10 9 7 31 31 H 1.07999 * 126.57989 * 0.02562 * 18 17 15 32 32 H 1.08003 * 126.58941 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2106 -0.5228 5 6 3.2982 0.1054 -1.5931 6 1 3.2135 0.5486 -2.5853 7 6 4.4712 -0.8392 -1.5415 8 1 4.3197 -1.8744 -1.2733 9 6 5.7381 -0.3819 -1.8365 10 7 5.9227 0.8784 -2.1635 11 14 7.1923 -1.5526 -1.7718 12 1 7.3793 -2.1837 -3.1031 13 1 8.4182 -0.7995 -1.4045 14 1 6.9353 -2.6056 -0.7567 15 6 1.9990 -0.6353 -1.2259 16 1 1.2771 -0.5432 -2.0373 17 6 2.2938 -2.0899 -0.9640 18 6 2.0966 -3.1002 -1.8294 19 6 2.5052 -4.2856 -1.1755 20 6 2.9275 -3.9280 0.0520 21 17 3.5369 -5.0045 1.2701 22 8 2.7972 -2.5969 0.1740 23 1 -0.3634 -1.0265 -0.0466 24 1 -0.3634 0.4729 0.9125 25 1 -0.3633 0.5537 -0.8657 26 1 2.0041 1.7977 1.0095 27 1 1.4245 2.0229 -0.6714 28 1 4.1115 0.8837 0.2787 29 1 3.8152 2.1343 -0.9711 30 1 6.8139 1.2002 -2.3707 31 1 1.7019 -3.0215 -2.8316 32 1 2.4828 -5.2858 -1.5824 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260235443.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:15 Heat of formation + Delta-G solvation = 7.396543 kcal Electronic energy + Delta-G solvation = -17444.617317 eV Core-core repulsion = 14625.503491 eV Total energy + Delta-G solvation = -2819.113825 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 4.10 seconds Orbital eigenvalues (eV) -43.50709 -39.75850 -37.84745 -35.14670 -33.95316 -32.47517 -31.75025 -28.48729 -27.06368 -25.43318 -22.84132 -22.56552 -21.75638 -20.75543 -18.93134 -18.06862 -17.19601 -16.59921 -16.41805 -16.24155 -15.15244 -14.70872 -14.51211 -14.21150 -13.92637 -13.65946 -13.55454 -13.29538 -13.14185 -12.87399 -12.64366 -12.50139 -12.41328 -12.06660 -11.99925 -11.59737 -11.35611 -10.87103 -10.71505 -10.49434 -9.36423 -9.04464 -8.13644 -6.17532 0.36667 0.81512 1.35149 1.38020 1.47493 1.72648 2.41774 2.66975 3.07754 3.21250 4.03979 4.09763 4.15067 4.24399 4.33661 4.46681 4.68727 4.71516 4.77115 4.86220 4.96805 4.99834 5.01188 5.13762 5.31629 5.52488 5.56910 5.71428 5.82684 6.03027 6.17765 6.30292 6.40320 6.87450 7.48528 8.96252 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.014224 B = 0.012060 C = 0.007491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.004667 B = 2321.107684 C = 3736.857094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.533 5.533 3 C 0.042 3.958 4 C -0.088 4.088 5 C 0.041 3.959 6 H 0.020 0.980 7 C -0.511 4.511 8 H 0.059 0.941 9 C 0.022 3.978 10 N -0.915 5.915 11 Si 0.931 3.069 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.278 1.278 15 C 0.142 3.858 16 H 0.088 0.912 17 C 0.085 3.915 18 C -0.240 4.240 19 C -0.164 4.164 20 C -0.023 4.023 21 Cl 0.016 6.984 22 O -0.171 6.171 23 H 0.065 0.935 24 H 0.082 0.918 25 H 0.040 0.960 26 H 0.085 0.915 27 H 0.056 0.944 28 H 0.032 0.968 29 H 0.049 0.951 30 H 0.259 0.741 31 H 0.169 0.831 32 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.903 -5.699 2.620 11.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.257 5.257 3 C -0.085 4.085 4 C -0.127 4.127 5 C 0.022 3.978 6 H 0.038 0.962 7 C -0.549 4.549 8 H 0.077 0.923 9 C -0.177 4.177 10 N -0.555 5.555 11 Si 0.758 3.242 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.203 1.203 15 C 0.033 3.967 16 H 0.106 0.894 17 C 0.033 3.967 18 C -0.260 4.260 19 C -0.185 4.185 20 C -0.099 4.099 21 Cl 0.045 6.955 22 O -0.069 6.069 23 H 0.083 0.917 24 H 0.101 0.899 25 H 0.058 0.942 26 H 0.104 0.896 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.187 0.813 32 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -9.489 -5.790 3.419 11.629 hybrid contribution 1.096 -0.206 -0.644 1.287 sum -8.393 -5.995 2.775 10.681 Atomic orbital electron populations 1.22571 0.86371 1.02130 1.01938 1.64510 1.09284 1.15777 1.36148 1.23264 0.95284 0.88759 1.01159 1.22223 0.94208 0.98446 0.97802 1.19539 0.90745 0.93061 0.94452 0.96203 1.21543 0.92318 0.95853 1.45207 0.92279 1.25499 1.00823 0.96112 0.95297 1.70034 1.22494 1.15046 1.47954 0.85945 0.80117 0.79654 0.78449 1.19894 1.20911 1.20275 1.21239 0.98017 0.85963 0.91454 0.89403 1.22245 0.95535 0.95561 0.83310 1.21647 1.11232 0.90923 1.02190 1.21678 1.03938 1.01298 0.91539 1.22634 1.11087 0.82104 0.94028 1.98358 1.86264 1.55754 1.55131 1.84031 1.64557 1.19603 1.38671 0.91652 0.89911 0.94180 0.89647 0.92603 0.94930 0.93241 0.93183 0.81341 0.80337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.40 127.69 1.20 1.68 16 2 N -0.53 -19.23 5.16 -888.43 -4.58 -23.81 16 3 C 0.04 1.50 6.56 86.65 0.57 2.07 16 4 C -0.09 -4.03 5.75 31.80 0.18 -3.84 16 5 C 0.04 1.97 2.86 -10.66 -0.03 1.94 16 6 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 7 C -0.51 -27.66 7.79 25.60 0.20 -27.46 16 8 H 0.06 3.26 4.80 -2.91 -0.01 3.24 16 9 C 0.02 1.20 5.34 84.66 0.45 1.65 16 10 N -0.92 -52.40 12.62 21.45 0.27 -52.13 16 11 Si 0.93 44.94 29.54 68.60 2.03 46.97 16 12 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 13 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 14 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 15 C 0.14 5.62 2.92 44.32 0.13 5.75 16 16 H 0.09 3.07 7.74 -2.39 -0.02 3.05 16 17 C 0.09 3.47 3.81 24.83 0.09 3.57 16 18 C -0.24 -8.55 10.66 22.19 0.24 -8.31 16 19 C -0.16 -5.49 10.88 22.23 0.24 -5.25 16 20 C -0.02 -0.86 7.90 67.00 0.53 -0.33 16 21 Cl 0.02 0.52 29.30 -2.72 -0.08 0.44 16 22 O -0.17 -7.50 9.86 -3.18 -0.03 -7.53 16 23 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 25 H 0.04 0.96 8.01 -2.39 -0.02 0.94 16 26 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 27 H 0.06 1.74 7.97 -2.38 -0.02 1.72 16 28 H 0.03 1.66 7.86 -2.39 -0.02 1.64 16 29 H 0.05 2.35 8.12 -2.39 -0.02 2.33 16 30 H 0.26 14.27 8.31 -92.71 -0.77 13.49 16 31 H 0.17 5.06 8.06 -2.91 -0.02 5.03 16 32 H 0.18 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -61.36 283.16 2.52 -58.84 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: 1.12 Total: 5.76 kcal Atomic # 6 Polarization: -32.35 SS G_CDS: 3.80 Total: -28.54 kcal Atomic # 7 Polarization: -71.62 SS G_CDS: -4.31 Total: -75.93 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.03 Total: -7.53 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 17 Polarization: 0.52 SS G_CDS: -0.08 Total: 0.44 kcal Total: -61.36 2.52 -58.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260235443.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.232 kcal (2) G-P(sol) polarization free energy of solvation -61.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.10 seconds