Wall clock time and date at job start Mon Mar 30 2020 06:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47901 * 111.00158 * 2 1 4 4 C 1.53985 * 107.06099 * 145.84452 * 3 2 1 5 5 C 1.54600 * 105.14106 * 358.77845 * 4 3 2 6 6 H 1.08997 * 110.72659 * 96.57617 * 5 4 3 7 7 C 1.50706 * 110.72246 * 219.68867 * 5 4 3 8 8 H 1.07999 * 120.00193 * 118.54762 * 7 5 4 9 9 C 1.37879 * 119.99398 * 298.53842 * 7 5 4 10 10 N 1.31514 * 120.00338 * 0.02562 * 9 7 5 11 11 Si 1.86800 * 119.99424 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46845 * 180.02562 * 11 9 7 13 13 H 1.48503 * 109.47399 * 299.99813 * 11 9 7 14 14 H 1.48498 * 109.47295 * 60.00420 * 11 9 7 15 15 C 1.48529 * 111.00268 * 117.39712 * 2 1 3 16 16 H 1.09006 * 110.66532 * 318.71560 * 15 2 1 17 17 C 1.50696 * 110.66967 * 81.84250 * 15 2 1 18 18 C 1.34491 * 125.78356 * 213.80988 * 17 15 2 19 19 C 1.41406 * 106.85626 * 180.02562 * 18 17 15 20 20 C 1.34648 * 106.82822 * 359.97438 * 19 18 17 21 21 Cl 1.73604 * 125.80141 * 180.02562 * 20 19 18 22 22 O 1.34305 * 108.39940 * 359.73501 * 20 19 18 23 23 H 1.08994 * 109.47375 * 59.87353 * 1 2 3 24 24 H 1.09000 * 109.47454 * 179.87349 * 1 2 3 25 25 H 1.09001 * 109.47271 * 299.87424 * 1 2 3 26 26 H 1.08999 * 109.91707 * 26.49162 * 3 2 1 27 27 H 1.09000 * 110.08099 * 265.29507 * 3 2 1 28 28 H 1.08999 * 110.31308 * 239.85890 * 4 3 2 29 29 H 1.08998 * 110.31102 * 117.68918 * 4 3 2 30 30 H 0.97000 * 119.99706 * 359.97438 * 10 9 7 31 31 H 1.08004 * 126.57020 * 0.02562 * 18 17 15 32 32 H 1.08001 * 126.58545 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2982 1.3659 0.8265 5 6 3.4492 -0.0929 1.3153 6 1 4.1140 -0.6532 0.6579 7 6 3.9512 -0.1301 2.7358 8 1 3.3470 -0.5786 3.5105 9 6 5.1820 0.4083 3.0462 10 7 5.9176 0.9546 2.1029 11 14 5.8045 0.3616 4.8068 12 1 7.1430 1.0012 4.8757 13 1 4.8595 1.0963 5.6857 14 1 5.9059 -1.0493 5.2588 15 6 2.0013 -0.6381 1.2311 16 1 1.4237 -0.3323 2.1035 17 6 2.0052 -2.1387 1.0934 18 6 1.7926 -3.0201 2.0867 19 6 1.8868 -4.3108 1.5168 20 6 2.1512 -4.1405 0.2076 21 17 2.3644 -5.4085 -0.9587 22 8 2.2155 -2.8228 -0.0439 23 1 -0.3634 0.5158 -0.8888 24 1 -0.3634 -1.0276 -0.0023 25 1 -0.3634 0.5119 0.8911 26 1 1.2758 2.0561 0.4571 27 1 2.2115 1.7001 -1.0203 28 1 3.2136 2.0429 1.6766 29 1 4.1469 1.6454 0.2023 30 1 5.5944 0.9785 1.1886 31 1 1.5889 -2.7868 3.1214 32 1 1.7693 -5.2524 2.0327 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260235451.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:30 Heat of formation + Delta-G solvation = -2.976244 kcal Electronic energy + Delta-G solvation = -17137.679313 eV Core-core repulsion = 14318.115690 eV Total energy + Delta-G solvation = -2819.563623 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 4.79 seconds Orbital eigenvalues (eV) -43.63426 -39.99125 -37.97252 -35.54615 -34.16134 -32.29137 -31.92893 -28.63714 -26.88513 -25.58202 -23.11167 -22.79119 -21.65046 -21.06707 -19.05617 -18.67287 -17.23619 -16.95107 -16.31720 -15.70561 -15.41366 -15.10853 -14.64061 -14.31131 -14.09057 -13.91031 -13.80767 -13.50375 -13.15953 -12.81155 -12.59351 -12.39941 -12.33388 -12.20427 -12.01999 -11.87511 -11.55718 -10.90157 -10.62010 -10.48135 -9.50211 -9.29555 -8.56689 -6.31185 0.19879 0.55965 1.53020 1.55589 1.62790 1.81198 2.43778 2.58375 2.94438 3.23559 3.86355 3.88775 3.98900 4.06484 4.21383 4.28137 4.50082 4.54685 4.59645 4.69130 4.78910 4.86747 4.89235 4.96790 5.05434 5.27502 5.38654 5.50157 5.69957 5.90619 6.11565 6.16670 6.23289 6.64270 7.49421 8.81809 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.018779 B = 0.007657 C = 0.006168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.661977 B = 3655.993218 C = 4538.239591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.535 5.535 3 C 0.046 3.954 4 C -0.116 4.116 5 C 0.044 3.956 6 H -0.011 1.011 7 C -0.602 4.602 8 H 0.055 0.945 9 C -0.026 4.026 10 N -0.937 5.937 11 Si 1.109 2.891 12 H -0.288 1.288 13 H -0.267 1.267 14 H -0.274 1.274 15 C 0.156 3.844 16 H 0.085 0.915 17 C 0.036 3.964 18 C -0.213 4.213 19 C -0.163 4.163 20 C -0.011 4.011 21 Cl 0.031 6.969 22 O -0.176 6.176 23 H 0.086 0.914 24 H 0.062 0.938 25 H 0.037 0.963 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.051 0.949 29 H 0.042 0.958 30 H 0.262 0.738 31 H 0.167 0.833 32 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.166 -6.922 -1.890 13.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.259 5.259 3 C -0.081 4.081 4 C -0.155 4.155 5 C 0.025 3.975 6 H 0.007 0.993 7 C -0.640 4.640 8 H 0.073 0.927 9 C -0.225 4.225 10 N -0.575 5.575 11 Si 0.932 3.068 12 H -0.214 1.214 13 H -0.192 1.192 14 H -0.199 1.199 15 C 0.048 3.952 16 H 0.103 0.897 17 C -0.015 4.015 18 C -0.233 4.233 19 C -0.183 4.183 20 C -0.087 4.087 21 Cl 0.060 6.940 22 O -0.074 6.074 23 H 0.105 0.895 24 H 0.081 0.919 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.185 0.815 32 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -9.695 -6.752 -1.813 11.952 hybrid contribution -1.136 -0.148 -0.639 1.312 sum -10.831 -6.900 -2.452 13.074 Atomic orbital electron populations 1.22555 0.86308 1.02163 1.01869 1.64590 1.09586 1.15734 1.35997 1.22838 0.95741 0.88891 1.00629 1.22477 0.96210 0.98846 0.97979 1.19626 0.90242 0.91796 0.95856 0.99291 1.22195 1.05918 1.42255 0.93665 0.92712 1.27111 0.94074 0.92682 1.08633 1.70896 1.40367 1.43397 1.02824 0.83026 0.75959 0.77370 0.70476 1.21407 1.19158 1.19899 1.21299 0.97833 0.84197 0.91880 0.89747 1.22439 1.02013 0.94110 0.82915 1.21747 1.09198 0.91450 1.00914 1.21775 1.05449 1.00125 0.90944 1.22742 1.12658 0.81143 0.92141 1.98384 1.96074 1.40452 1.59110 1.83962 1.70543 1.16729 1.36168 0.89501 0.91868 0.94400 0.92205 0.89809 0.93055 0.93945 0.92719 0.81547 0.79563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.29 127.69 1.19 1.73 16 2 N -0.53 -19.72 5.21 -888.62 -4.63 -24.35 16 3 C 0.05 1.67 6.70 86.44 0.58 2.24 16 4 C -0.12 -5.28 5.34 31.47 0.17 -5.12 16 5 C 0.04 2.20 2.05 -10.33 -0.02 2.18 16 6 H -0.01 -0.64 7.99 -2.39 -0.02 -0.66 16 7 C -0.60 -32.48 8.42 25.60 0.22 -32.26 16 8 H 0.05 2.85 7.78 -2.91 -0.02 2.83 16 9 C -0.03 -1.45 5.33 84.66 0.45 -1.00 16 10 N -0.94 -56.21 13.42 21.45 0.29 -55.93 16 11 Si 1.11 48.91 29.90 68.60 2.05 50.96 16 12 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 13 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 14 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 15 C 0.16 6.45 2.17 44.52 0.10 6.55 16 16 H 0.08 3.39 7.86 -2.38 -0.02 3.37 16 17 C 0.04 1.46 6.01 24.83 0.15 1.61 16 18 C -0.21 -7.45 10.81 22.19 0.24 -7.21 16 19 C -0.16 -4.99 10.88 22.23 0.24 -4.75 16 20 C -0.01 -0.37 7.93 67.00 0.53 0.16 16 21 Cl 0.03 0.84 29.30 -2.72 -0.08 0.76 16 22 O -0.18 -7.16 10.63 -3.24 -0.03 -7.19 16 23 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.06 1.78 8.01 -2.39 -0.02 1.76 16 25 H 0.04 0.99 8.00 -2.39 -0.02 0.97 16 26 H 0.06 1.87 7.73 -2.39 -0.02 1.85 16 27 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 28 H 0.05 2.44 7.84 -2.39 -0.02 2.42 16 29 H 0.04 2.02 6.97 -2.39 -0.02 2.01 16 30 H 0.26 15.84 5.53 -92.71 -0.51 15.33 16 31 H 0.17 5.19 8.06 -2.91 -0.02 5.16 16 32 H 0.19 4.25 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -63.27 284.84 2.80 -60.47 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 1.37 Total: 11.16 kcal Atomic # 6 Polarization: -39.71 SS G_CDS: 3.84 Total: -35.87 kcal Atomic # 7 Polarization: -75.93 SS G_CDS: -4.34 Total: -80.28 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -0.03 Total: -7.19 kcal Atomic # 14 Polarization: 48.91 SS G_CDS: 2.05 Total: 50.96 kcal Atomic # 17 Polarization: 0.84 SS G_CDS: -0.08 Total: 0.76 kcal Total: -63.27 2.80 -60.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260235451.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.490 kcal (2) G-P(sol) polarization free energy of solvation -63.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.79 seconds