Wall clock time and date at job start Mon Mar 30 2020 07:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76196 * 103.00402 * 2 1 4 4 C 1.38901 * 120.08074 * 0.02562 * 3 2 1 5 5 C 1.38129 * 119.94247 * 180.02562 * 4 3 2 6 6 C 1.38293 * 120.11509 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.91053 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47161 * 19.99924 * 7 6 5 9 9 N 1.46902 * 109.46577 * 139.99786 * 7 6 5 10 10 C 1.52997 * 109.47103 * 259.99890 * 7 6 5 11 11 C 1.50705 * 109.47112 * 175.00403 * 10 7 6 12 12 H 1.07993 * 119.99645 * 359.97438 * 11 10 7 13 13 C 1.37876 * 120.00027 * 179.97438 * 11 10 7 14 14 N 1.31516 * 120.00148 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00045 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47020 * 89.99907 * 15 13 11 17 17 H 1.48496 * 109.47420 * 210.00357 * 15 13 11 18 18 H 1.48507 * 109.47042 * 330.00579 * 15 13 11 19 19 C 1.38302 * 120.17400 * 0.28983 * 6 5 4 20 20 C 1.38264 * 120.05160 * 359.45877 * 19 6 5 21 21 F 1.35105 * 120.05701 * 180.29501 * 20 19 6 22 22 H 1.09004 * 109.46749 * 299.99746 * 1 2 3 23 23 H 1.08996 * 109.47116 * 59.99466 * 1 2 3 24 24 H 1.08997 * 109.47285 * 180.02562 * 1 2 3 25 25 H 1.07997 * 120.02809 * 0.04459 * 4 3 2 26 26 H 1.08003 * 119.94521 * 179.97438 * 5 4 3 27 27 H 1.00893 * 111.00154 * 296.04385 * 9 7 6 28 28 H 1.00903 * 110.99827 * 60.00558 * 9 7 6 29 29 H 1.09001 * 109.47096 * 295.00164 * 10 7 6 30 30 H 1.08994 * 109.47510 * 55.00027 * 10 7 6 31 31 H 0.96992 * 120.00329 * 179.97438 * 14 13 11 32 32 H 1.08001 * 119.97661 * 179.72660 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 1.1960 2.6656 0.0005 5 6 1.5101 4.0107 0.0000 6 6 2.8328 4.4144 -0.0005 7 6 3.1702 5.8832 -0.0005 8 1 2.3105 6.4535 0.3514 9 7 4.3142 6.1227 0.8893 10 6 3.5279 6.3243 -1.4212 11 6 3.7457 7.8153 -1.4444 12 1 3.6392 8.3907 -0.5368 13 6 4.0810 8.4448 -2.6244 14 7 4.2112 7.7440 -3.7296 15 14 4.3502 10.2930 -2.6533 16 1 5.7792 10.5894 -2.3784 17 1 3.9823 10.8260 -3.9896 18 1 3.5033 10.9329 -1.6147 19 6 3.8467 3.4738 -0.0066 20 6 3.5403 2.1255 -0.0008 21 9 4.5307 1.2066 -0.0007 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 0.1626 2.3519 0.0017 26 1 0.7213 4.7485 0.0000 27 1 4.0816 5.8997 1.8454 28 1 5.1245 5.6046 0.5840 29 1 4.4396 5.8189 -1.7398 30 1 2.7136 6.0655 -2.0979 31 1 4.4466 8.1868 -4.5598 32 1 4.8785 3.7926 -0.0115 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260286369.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:47 Heat of formation + Delta-G solvation = -48.112559 kcal Electronic energy + Delta-G solvation = -16192.543182 eV Core-core repulsion = 13385.438797 eV Total energy + Delta-G solvation = -2807.104385 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.079 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.02379 -40.44335 -36.93151 -34.55508 -31.95586 -31.41960 -30.17575 -29.68351 -26.41751 -24.21162 -23.62625 -21.44814 -19.12076 -18.52670 -17.86910 -17.50230 -16.82178 -16.66881 -16.33253 -16.18228 -15.28063 -15.12707 -14.75122 -14.59077 -14.33488 -14.11896 -13.61057 -13.48880 -13.20525 -13.14051 -12.71947 -12.52357 -12.31186 -12.14268 -11.64877 -11.30727 -11.21932 -10.57350 -10.50718 -9.94369 -9.48376 -8.43534 -8.10948 -6.17783 -0.06029 0.08985 0.42055 1.39901 1.44236 1.45418 1.56167 2.39998 2.49313 3.07533 3.22452 3.60119 3.79006 3.88978 4.12594 4.20458 4.26805 4.29756 4.47032 4.58113 4.78049 4.87007 4.92902 4.98090 5.03645 5.38837 5.46769 5.68755 5.73523 5.87150 6.28295 6.47317 6.78561 6.96952 7.49294 9.00570 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.037324 B = 0.004565 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.016936 B = 6132.009908 C = 6279.149929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.140 6.140 3 C -0.137 4.137 4 C -0.097 4.097 5 C -0.105 4.105 6 C -0.088 4.088 7 C 0.147 3.853 8 H 0.087 0.913 9 N -0.829 5.829 10 C 0.043 3.957 11 C -0.506 4.506 12 H 0.064 0.936 13 C -0.005 4.005 14 N -0.940 5.940 15 Si 0.961 3.039 16 H -0.279 1.279 17 H -0.287 1.287 18 H -0.263 1.263 19 C -0.142 4.142 20 C 0.095 3.905 21 F -0.141 7.141 22 H 0.100 0.900 23 H 0.095 0.905 24 H 0.131 0.869 25 H 0.166 0.834 26 H 0.152 0.848 27 H 0.343 0.657 28 H 0.337 0.663 29 H -0.012 1.012 30 H -0.004 1.004 31 H 0.259 0.741 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.937 -13.777 9.851 19.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.101 5.899 3 C -0.250 4.250 4 C -0.120 4.120 5 C -0.125 4.125 6 C -0.093 4.093 7 C 0.035 3.965 8 H 0.105 0.895 9 N -0.358 5.358 10 C 0.005 3.995 11 C -0.544 4.544 12 H 0.082 0.918 13 C -0.202 4.202 14 N -0.582 5.582 15 Si 0.787 3.213 16 H -0.205 1.205 17 H -0.213 1.213 18 H -0.187 1.187 19 C -0.163 4.163 20 C 0.070 3.930 21 F -0.119 7.119 22 H 0.118 0.882 23 H 0.113 0.887 24 H 0.149 0.851 25 H 0.183 0.817 26 H 0.169 0.831 27 H 0.156 0.844 28 H 0.150 0.850 29 H 0.006 0.994 30 H 0.014 0.986 31 H 0.068 0.932 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.274 -14.076 9.465 18.873 hybrid contribution -0.020 0.767 -0.381 0.857 sum -8.294 -13.308 9.084 18.123 Atomic orbital electron populations 1.23851 0.90631 1.08951 1.06975 1.85696 1.10825 1.00714 1.92633 1.21913 0.94546 0.99444 1.09134 1.21357 0.99039 0.91836 0.99786 1.21342 0.96076 0.96279 0.98843 1.21126 0.93672 0.97711 0.96740 1.20440 0.93989 0.87235 0.94832 0.89520 1.58741 1.06249 1.65505 1.05284 1.18972 0.94554 0.95503 0.90421 1.21508 1.44877 0.93649 0.94358 0.91780 1.25899 0.95862 1.02918 0.95479 1.70104 1.50579 1.37429 1.00095 0.85506 0.78453 0.80169 0.77211 1.20462 1.21281 1.18695 1.20901 1.01136 0.90513 1.03745 1.17228 0.83905 0.86272 1.05577 1.91466 1.60621 1.65800 1.94054 0.88151 0.88656 0.85111 0.81691 0.83051 0.84413 0.84968 0.99351 0.98602 0.93212 0.84897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.15 113.37 1.04 -0.62 16 2 S -0.14 -3.20 22.17 -56.49 -1.25 -4.45 16 3 C -0.14 -3.81 6.11 22.64 0.14 -3.67 16 4 C -0.10 -2.32 9.36 22.40 0.21 -2.11 16 5 C -0.11 -2.90 9.66 22.26 0.21 -2.69 16 6 C -0.09 -2.90 4.95 -19.83 -0.10 -3.00 16 7 C 0.15 5.62 2.93 44.17 0.13 5.75 16 8 H 0.09 3.23 8.00 -2.39 -0.02 3.21 16 9 N -0.83 -29.08 8.78 -171.79 -1.51 -30.59 16 10 C 0.04 2.18 4.60 29.85 0.14 2.32 16 11 C -0.51 -28.17 8.84 25.60 0.23 -27.94 16 12 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 13 C -0.01 -0.31 5.46 84.65 0.46 0.16 16 14 N -0.94 -57.49 13.29 21.45 0.28 -57.21 16 15 Si 0.96 44.86 29.54 68.60 2.03 46.89 16 16 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 17 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 18 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 19 C -0.14 -4.73 9.26 22.29 0.21 -4.53 16 20 C 0.10 3.07 7.28 22.49 0.16 3.23 16 21 F -0.14 -4.70 16.76 44.97 0.75 -3.95 16 22 H 0.10 0.97 7.75 -2.39 -0.02 0.95 16 23 H 0.09 1.05 7.75 -2.39 -0.02 1.03 16 24 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.17 2.69 5.88 -2.91 -0.02 2.67 16 26 H 0.15 3.56 8.03 -2.91 -0.02 3.54 16 27 H 0.34 9.77 9.06 -89.70 -0.81 8.96 16 28 H 0.34 11.64 7.35 -89.69 -0.66 10.98 16 29 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 30 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 31 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 32 H 0.13 4.37 6.67 -2.91 -0.02 4.36 16 Total: -1.00 -67.22 290.40 2.81 -64.40 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -0.32 Total: 18.00 kcal Atomic # 6 Polarization: -35.92 SS G_CDS: 2.83 Total: -33.09 kcal Atomic # 7 Polarization: -86.57 SS G_CDS: -1.22 Total: -87.80 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.75 Total: -3.95 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: -3.20 SS G_CDS: -1.25 Total: -4.45 kcal Total: -67.22 2.81 -64.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260286369.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.289 kcal (2) G-P(sol) polarization free energy of solvation -67.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds