Wall clock time and date at job start Mon Mar 30 2020 06:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99942 * 2 1 4 4 C 1.50703 * 109.47005 * 180.02562 * 3 2 1 5 5 C 1.38244 * 120.00472 * 359.97438 * 4 3 2 6 6 C 1.38214 * 120.00884 * 180.02562 * 5 4 3 7 7 C 1.38264 * 120.03016 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99602 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47044 * 340.00622 * 8 7 6 10 10 N 1.46895 * 109.47470 * 220.00369 * 8 7 6 11 11 C 1.50703 * 109.46901 * 100.00097 * 8 7 6 12 12 H 1.07995 * 119.99888 * 5.59056 * 11 8 7 13 13 C 1.37877 * 119.99991 * 185.59418 * 11 8 7 14 14 N 1.31514 * 120.00089 * 194.83263 * 13 11 8 15 15 Si 1.86805 * 120.00050 * 14.83087 * 13 11 8 16 16 H 1.48497 * 109.47127 * 180.02562 * 15 13 11 17 17 H 1.48497 * 109.46946 * 60.00281 * 15 13 11 18 18 H 1.48499 * 109.46927 * 300.00097 * 15 13 11 19 19 C 1.38190 * 120.01346 * 0.27155 * 7 6 5 20 20 C 1.38330 * 120.00513 * 180.02562 * 4 3 2 21 21 Cl 1.73599 * 120.01429 * 359.95238 * 20 4 3 22 22 H 1.09000 * 109.47306 * 60.00327 * 1 2 3 23 23 H 1.08997 * 109.47076 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47339 * 299.99962 * 1 2 3 25 25 H 1.08995 * 109.47110 * 59.99777 * 3 2 1 26 26 H 1.09003 * 109.46788 * 299.99835 * 3 2 1 27 27 H 1.08000 * 119.99362 * 0.02562 * 5 4 3 28 28 H 1.08001 * 119.98367 * 180.02562 * 6 5 4 29 29 H 1.00897 * 110.99831 * 179.21853 * 10 8 7 30 30 H 1.00904 * 110.99655 * 303.16356 * 10 8 7 31 31 H 0.96998 * 119.99633 * 354.89815 * 14 13 11 32 32 H 1.07993 * 120.01054 * 179.72489 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.1072 -0.0616 -0.0006 6 6 5.4850 -0.1708 -0.0006 7 6 6.2694 0.9678 -0.0002 8 6 7.7716 0.8478 0.0003 9 1 8.0567 -0.1439 0.3517 10 7 8.3439 1.8661 0.8909 11 6 8.2924 1.0539 -1.3987 12 1 7.6158 1.3408 -2.1900 13 6 9.6328 0.8761 -1.6685 14 7 10.1428 1.3282 -2.7932 15 14 10.7244 -0.0070 -0.4364 16 1 12.1131 -0.0668 -0.9591 17 1 10.2155 -1.3856 -0.2232 18 1 10.7126 0.7300 0.8527 19 6 5.6761 2.2159 0.0059 20 6 4.2967 2.3260 -0.0002 21 17 3.5507 3.8935 -0.0002 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.6886 1.8464 0.8899 26 1 1.6886 1.8463 -0.8900 27 1 3.4950 -0.9513 -0.0005 28 1 5.9491 -1.1460 -0.0010 29 1 9.3502 1.7981 0.9184 30 1 8.0515 2.7921 0.6164 31 1 9.5637 1.7205 -3.4652 32 1 6.2889 3.1051 0.0108 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260297287.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:16 Heat of formation + Delta-G solvation = -54.440099 kcal Electronic energy + Delta-G solvation = -16394.984542 eV Core-core repulsion = 13573.189278 eV Total energy + Delta-G solvation = -2821.795263 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.72718 -38.74515 -37.64379 -36.56930 -34.10108 -32.28347 -31.66623 -28.64289 -27.53315 -26.31360 -23.72347 -23.45268 -21.36846 -19.82285 -18.14672 -17.52540 -16.90592 -16.88943 -16.17237 -15.87320 -15.66984 -15.14640 -14.86828 -14.66314 -14.45755 -14.26477 -13.81713 -13.26204 -13.03779 -12.60501 -12.50989 -12.35218 -12.15564 -11.99995 -11.90269 -11.62795 -11.34898 -10.80065 -10.65505 -9.75774 -9.65161 -9.41230 -8.66783 -6.51110 0.20334 0.38011 1.07323 1.44058 1.51282 1.70588 2.41249 2.68893 2.70348 3.00262 3.73081 3.93697 3.97913 4.17654 4.29934 4.38066 4.42002 4.52055 4.58103 4.60013 4.75152 4.86984 4.89490 5.11663 5.25722 5.33758 5.62146 5.80039 5.89574 5.93673 6.18328 6.35552 6.51202 6.77116 7.30855 8.54168 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.029516 B = 0.005630 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.405099 B = 4971.790383 C = 5455.857561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.115 3.885 4 C -0.108 4.108 5 C -0.083 4.083 6 C -0.129 4.129 7 C -0.038 4.038 8 C 0.215 3.785 9 H 0.050 0.950 10 N -0.845 5.845 11 C -0.623 4.623 12 H 0.013 0.987 13 C -0.017 4.017 14 N -0.930 5.930 15 Si 1.088 2.912 16 H -0.289 1.289 17 H -0.264 1.264 18 H -0.238 1.238 19 C -0.111 4.111 20 C -0.033 4.033 21 Cl -0.065 7.065 22 H 0.050 0.950 23 H 0.101 0.899 24 H 0.053 0.947 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.153 0.847 28 H 0.134 0.866 29 H 0.332 0.668 30 H 0.329 0.671 31 H 0.252 0.748 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.714 -0.735 8.276 18.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C 0.039 3.961 4 C -0.109 4.109 5 C -0.101 4.101 6 C -0.147 4.147 7 C -0.038 4.038 8 C 0.105 3.895 9 H 0.068 0.932 10 N -0.376 5.376 11 C -0.663 4.663 12 H 0.032 0.968 13 C -0.216 4.216 14 N -0.565 5.565 15 Si 0.909 3.091 16 H -0.216 1.216 17 H -0.189 1.189 18 H -0.163 1.163 19 C -0.131 4.131 20 C -0.060 4.060 21 Cl -0.037 7.037 22 H 0.069 0.931 23 H 0.119 0.881 24 H 0.072 0.928 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.170 0.830 28 H 0.152 0.848 29 H 0.147 0.853 30 H 0.141 0.859 31 H 0.061 0.939 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.542 -1.559 9.154 18.105 hybrid contribution -1.124 1.443 -2.006 2.714 sum -16.666 -0.116 7.149 18.135 Atomic orbital electron populations 1.22973 0.78872 1.04180 1.01074 1.87809 1.21852 1.27252 1.95668 1.21133 0.88004 0.85239 1.01749 1.19612 0.95563 0.91930 1.03748 1.21017 0.93680 0.97486 0.97898 1.21330 0.94026 0.98677 1.00691 1.20057 0.96231 0.92909 0.94649 1.18209 0.88071 0.93233 0.90012 0.93191 1.59811 1.14597 1.07807 1.55426 1.22755 0.95638 1.51904 0.95972 0.96809 1.27313 0.98492 0.94562 1.01256 1.70985 1.37922 1.38040 1.09579 0.83477 0.74198 0.77077 0.74338 1.21559 1.18899 1.16286 1.20726 0.92390 0.98223 1.01716 1.20597 0.92505 0.86060 1.06847 1.98321 1.82178 1.26192 1.96963 0.93126 0.88061 0.92788 0.90554 0.91159 0.82972 0.84799 0.85308 0.85923 0.93911 0.85956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 11.01 113.37 1.25 1.62 16 2 O -0.41 -9.52 9.18 -148.98 -1.37 -10.88 16 3 C 0.11 2.78 5.30 71.24 0.38 3.15 16 4 C -0.11 -3.34 5.88 -19.84 -0.12 -3.45 16 5 C -0.08 -2.66 9.38 22.27 0.21 -2.45 16 6 C -0.13 -4.73 9.67 22.27 0.22 -4.52 16 7 C -0.04 -1.57 4.90 -19.87 -0.10 -1.66 16 8 C 0.21 9.87 2.49 43.42 0.11 9.97 16 9 H 0.05 2.27 6.71 -2.39 -0.02 2.25 16 10 N -0.85 -35.59 9.09 -174.96 -1.59 -37.18 16 11 C -0.62 -34.37 9.04 25.60 0.23 -34.14 16 12 H 0.01 0.85 7.99 -2.91 -0.02 0.83 16 13 C -0.02 -0.94 5.41 84.65 0.46 -0.48 16 14 N -0.93 -56.90 13.70 21.45 0.29 -56.60 16 15 Si 1.09 47.49 26.42 68.60 1.81 49.31 16 16 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 17 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 18 H -0.24 -9.05 5.62 99.48 0.56 -8.49 16 19 C -0.11 -4.33 9.06 22.29 0.20 -4.13 16 20 C -0.03 -1.12 6.31 22.33 0.14 -0.98 16 21 Cl -0.07 -1.84 27.99 -2.72 -0.08 -1.92 16 22 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 23 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.15 4.27 7.01 -2.91 -0.02 4.25 16 28 H 0.13 4.54 8.04 -2.91 -0.02 4.52 16 29 H 0.33 13.86 5.48 -89.70 -0.49 13.37 16 30 H 0.33 13.54 7.22 -89.69 -0.65 12.90 16 31 H 0.25 15.81 8.73 -92.71 -0.81 15.00 16 32 H 0.12 4.80 6.60 -2.91 -0.02 4.78 16 Total: -1.00 -63.42 283.12 1.87 -61.54 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: -0.17 Total: 32.81 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: 2.98 Total: -37.07 kcal Atomic # 7 Polarization: -92.49 SS G_CDS: -1.30 Total: -93.79 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -1.37 Total: -10.88 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 1.81 Total: 49.31 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -0.08 Total: -1.92 kcal Total: -63.42 1.87 -61.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260297287.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.103 kcal (2) G-P(sol) polarization free energy of solvation -63.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds