Wall clock time and date at job start Mon Mar 30 2020 06:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00433 * 2 1 4 4 C 1.50697 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.38230 * 120.01001 * 359.97438 * 4 3 2 6 6 C 1.38218 * 120.01570 * 179.77151 * 5 4 3 7 7 C 1.38261 * 120.02420 * 0.50018 * 6 5 4 8 8 C 1.50697 * 119.99340 * 179.77248 * 7 6 5 9 9 H 1.08999 * 109.47706 * 199.72638 * 8 7 6 10 10 N 1.46906 * 109.47064 * 319.72433 * 8 7 6 11 11 C 1.50701 * 109.47065 * 79.72443 * 8 7 6 12 12 H 1.08001 * 120.00367 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99893 * 180.02562 * 11 8 7 14 14 N 1.31518 * 119.99853 * 359.97438 * 13 11 8 15 15 Si 1.86799 * 120.00063 * 180.02562 * 13 11 8 16 16 H 1.48498 * 109.47119 * 89.99257 * 15 13 11 17 17 H 1.48497 * 109.47049 * 209.99747 * 15 13 11 18 18 H 1.48502 * 109.46789 * 329.99615 * 15 13 11 19 19 C 1.38190 * 120.01282 * 359.49956 * 7 6 5 20 20 C 1.38336 * 120.00386 * 180.02562 * 4 3 2 21 21 Cl 1.73598 * 120.01451 * 359.95258 * 20 4 3 22 22 H 1.08997 * 109.47657 * 59.99464 * 1 2 3 23 23 H 1.08999 * 109.47402 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46943 * 300.00001 * 1 2 3 25 25 H 1.08998 * 109.46552 * 60.00000 * 3 2 1 26 26 H 1.09004 * 109.47034 * 300.00450 * 3 2 1 27 27 H 1.08009 * 119.98932 * 0.03687 * 5 4 3 28 28 H 1.07998 * 119.98583 * 180.27756 * 6 5 4 29 29 H 1.00896 * 111.00309 * 296.04459 * 10 8 7 30 30 H 1.00902 * 110.99923 * 60.00622 * 10 8 7 31 31 H 0.96998 * 119.99658 * 179.97438 * 14 13 11 32 32 H 1.08000 * 120.00379 * 180.27664 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.1072 -0.0615 -0.0006 6 6 5.4850 -0.1708 -0.0059 7 6 6.2694 0.9677 -0.0009 8 6 7.7716 0.8477 -0.0016 9 1 8.2109 1.7814 0.3494 10 7 8.1756 -0.2487 0.8889 11 6 8.2520 0.5613 -1.4009 12 1 7.5407 0.4752 -2.2091 13 6 9.5997 0.4091 -1.6495 14 7 10.4658 0.5144 -0.6655 15 14 10.1953 0.0548 -3.3842 16 1 10.4634 1.3353 -4.0867 17 1 11.4431 -0.7480 -3.3248 18 1 9.1526 -0.7046 -4.1201 19 6 5.6761 2.2158 -0.0010 20 6 4.2968 2.3259 -0.0002 21 17 3.5508 3.8935 -0.0002 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.6887 1.8463 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 3.4949 -0.9513 -0.0007 28 1 5.9491 -1.1460 -0.0104 29 1 7.9216 -0.0503 1.8450 30 1 7.7809 -1.1259 0.5844 31 1 11.4139 0.4069 -0.8403 32 1 6.2889 3.1051 -0.0016 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260297290.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:19 Heat of formation + Delta-G solvation = -30.454032 kcal Electronic energy + Delta-G solvation = -16336.395632 eV Core-core repulsion = 13515.640482 eV Total energy + Delta-G solvation = -2820.755150 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.35040 -37.67807 -36.31169 -34.57335 -31.91220 -30.64279 -30.09316 -27.29829 -26.11160 -25.01243 -22.47534 -21.87171 -19.91882 -16.63965 -16.57063 -16.33918 -15.97295 -15.13749 -14.70724 -14.43011 -14.22310 -13.90127 -13.50838 -13.24312 -12.58390 -12.43779 -12.23186 -11.65719 -11.53751 -11.29703 -11.08879 -10.87278 -10.76897 -10.54887 -10.48234 -9.95593 -9.78529 -9.26424 -8.45936 -8.34646 -7.97155 -7.13142 -5.90530 -4.05900 1.61512 1.80184 2.39633 3.33229 3.40254 3.43451 3.63057 4.11983 4.48758 4.91632 5.15469 5.18707 5.27596 5.31003 5.36147 5.44562 5.48064 5.69059 5.90975 5.93308 6.16938 6.26301 6.46433 6.63374 6.80001 6.97161 7.12452 7.34914 7.50026 7.87960 8.13449 8.58322 8.96066 9.10655 9.63070 11.13739 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.025961 B = 0.005441 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.274675 B = 5144.836450 C = 5488.505328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.111 3.889 4 C -0.113 4.113 5 C -0.087 4.087 6 C -0.118 4.118 7 C -0.058 4.058 8 C 0.253 3.747 9 H 0.049 0.951 10 N -0.808 5.808 11 C -0.532 4.532 12 H 0.054 0.946 13 C 0.085 3.915 14 N -0.846 5.846 15 Si 0.886 3.114 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.111 4.111 20 C -0.028 4.028 21 Cl -0.090 7.090 22 H 0.041 0.959 23 H 0.086 0.914 24 H 0.040 0.960 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.131 0.869 28 H 0.125 0.875 29 H 0.299 0.701 30 H 0.318 0.682 31 H 0.256 0.744 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.418 1.460 2.666 16.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.305 6.305 3 C 0.035 3.965 4 C -0.114 4.114 5 C -0.105 4.105 6 C -0.136 4.136 7 C -0.061 4.061 8 C 0.144 3.856 9 H 0.067 0.933 10 N -0.334 5.334 11 C -0.571 4.571 12 H 0.072 0.928 13 C -0.122 4.122 14 N -0.480 5.480 15 Si 0.713 3.287 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.130 4.130 20 C -0.055 4.055 21 Cl -0.062 7.062 22 H 0.059 0.941 23 H 0.104 0.896 24 H 0.059 0.941 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.149 0.851 28 H 0.143 0.857 29 H 0.110 0.890 30 H 0.131 0.869 31 H 0.066 0.934 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.394 1.593 2.504 15.677 hybrid contribution -0.981 0.132 -0.845 1.302 sum -16.375 1.725 1.659 16.549 Atomic orbital electron populations 1.22728 0.81053 1.02723 0.99943 1.87855 1.19519 1.27657 1.95458 1.21148 0.90221 0.84519 1.00589 1.19196 0.93544 0.92544 1.06145 1.20852 0.94581 0.96344 0.98735 1.21139 0.92871 0.99275 1.00328 1.21874 1.01438 0.91230 0.91539 1.18259 0.80953 0.92557 0.93867 0.93311 1.59203 1.66833 1.04591 1.02788 1.20802 0.91944 1.52755 0.91577 0.92753 1.24942 0.96820 0.94303 0.96185 1.70104 1.01447 1.46150 1.30317 0.86730 0.78320 0.78307 0.85333 1.20720 1.21220 1.19978 1.20965 0.91341 0.99008 1.01674 1.20627 0.93130 0.84394 1.07302 1.98318 1.82860 1.27874 1.97104 0.94078 0.89575 0.94119 0.92165 0.92111 0.85072 0.85705 0.89045 0.86883 0.93371 0.85163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -5.07 9.18 -35.23 -0.32 -5.40 16 3 C 0.11 1.49 5.30 36.00 0.19 1.68 16 4 C -0.11 -1.84 5.88 -104.59 -0.62 -2.45 16 5 C -0.09 -1.46 9.38 -39.59 -0.37 -1.83 16 6 C -0.12 -2.18 9.29 -39.58 -0.37 -2.55 16 7 C -0.06 -1.18 4.88 -104.63 -0.51 -1.70 16 8 C 0.25 6.07 2.85 -70.01 -0.20 5.87 16 9 H 0.05 1.28 8.00 -51.93 -0.42 0.87 16 10 N -0.81 -18.35 8.37 -6.65 -0.06 -18.40 16 11 C -0.53 -14.30 8.70 -34.44 -0.30 -14.59 16 12 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 13 C 0.08 2.32 5.39 -17.82 -0.10 2.22 16 14 N -0.85 -24.21 12.77 55.43 0.71 -23.50 16 15 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 C -0.11 -2.10 9.45 -39.55 -0.37 -2.47 16 20 C -0.03 -0.47 6.31 -39.50 -0.25 -0.72 16 21 Cl -0.09 -1.31 27.99 -51.86 -1.45 -2.76 16 22 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.13 2.02 7.01 -52.48 -0.37 1.65 16 28 H 0.13 2.23 6.67 -52.49 -0.35 1.88 16 29 H 0.30 6.07 9.06 -39.29 -0.36 5.72 16 30 H 0.32 6.84 7.35 -39.29 -0.29 6.55 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.13 2.42 8.04 -52.49 -0.42 2.00 16 LS Contribution 290.49 15.07 4.38 4.38 Total: -1.00 -28.98 290.49 -7.40 -36.38 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -3.85 Total: 8.32 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -1.78 Total: -15.13 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.65 Total: -41.91 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.32 Total: -5.40 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -1.45 Total: -2.76 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.98 -7.40 -36.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260297290.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.930 kcal (2) G-P(sol) polarization free energy of solvation -28.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds