Wall clock time and date at job start Mon Mar 30 2020 06:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00433 * 2 1 4 4 C 1.50697 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.38230 * 120.01001 * 359.97438 * 4 3 2 6 6 C 1.38218 * 120.01570 * 179.77151 * 5 4 3 7 7 C 1.38261 * 120.02420 * 0.50018 * 6 5 4 8 8 C 1.50697 * 119.99340 * 179.77248 * 7 6 5 9 9 H 1.08999 * 109.47706 * 199.72638 * 8 7 6 10 10 N 1.46906 * 109.47064 * 319.72433 * 8 7 6 11 11 C 1.50701 * 109.47065 * 79.72443 * 8 7 6 12 12 H 1.08001 * 120.00367 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99893 * 180.02562 * 11 8 7 14 14 N 1.31518 * 119.99853 * 359.97438 * 13 11 8 15 15 Si 1.86799 * 120.00063 * 180.02562 * 13 11 8 16 16 H 1.48498 * 109.47119 * 89.99257 * 15 13 11 17 17 H 1.48497 * 109.47049 * 209.99747 * 15 13 11 18 18 H 1.48502 * 109.46789 * 329.99615 * 15 13 11 19 19 C 1.38190 * 120.01282 * 359.49956 * 7 6 5 20 20 C 1.38336 * 120.00386 * 180.02562 * 4 3 2 21 21 Cl 1.73598 * 120.01451 * 359.95258 * 20 4 3 22 22 H 1.08997 * 109.47657 * 59.99464 * 1 2 3 23 23 H 1.08999 * 109.47402 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46943 * 300.00001 * 1 2 3 25 25 H 1.08998 * 109.46552 * 60.00000 * 3 2 1 26 26 H 1.09004 * 109.47034 * 300.00450 * 3 2 1 27 27 H 1.08009 * 119.98932 * 0.03687 * 5 4 3 28 28 H 1.07998 * 119.98583 * 180.27756 * 6 5 4 29 29 H 1.00896 * 111.00309 * 296.04459 * 10 8 7 30 30 H 1.00902 * 110.99923 * 60.00622 * 10 8 7 31 31 H 0.96998 * 119.99658 * 179.97438 * 14 13 11 32 32 H 1.08000 * 120.00379 * 180.27664 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.1072 -0.0615 -0.0006 6 6 5.4850 -0.1708 -0.0059 7 6 6.2694 0.9677 -0.0009 8 6 7.7716 0.8477 -0.0016 9 1 8.2109 1.7814 0.3494 10 7 8.1756 -0.2487 0.8889 11 6 8.2520 0.5613 -1.4009 12 1 7.5407 0.4752 -2.2091 13 6 9.5997 0.4091 -1.6495 14 7 10.4658 0.5144 -0.6655 15 14 10.1953 0.0548 -3.3842 16 1 10.4634 1.3353 -4.0867 17 1 11.4431 -0.7480 -3.3248 18 1 9.1526 -0.7046 -4.1201 19 6 5.6761 2.2158 -0.0010 20 6 4.2968 2.3259 -0.0002 21 17 3.5508 3.8935 -0.0002 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.6887 1.8463 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 3.4949 -0.9513 -0.0007 28 1 5.9491 -1.1460 -0.0104 29 1 7.9216 -0.0503 1.8450 30 1 7.7809 -1.1259 0.5844 31 1 11.4139 0.4069 -0.8403 32 1 6.2889 3.1051 -0.0016 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260297290.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:19 Heat of formation + Delta-G solvation = -48.906122 kcal Electronic energy + Delta-G solvation = -16337.195775 eV Core-core repulsion = 13515.640482 eV Total energy + Delta-G solvation = -2821.555292 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.70250 -38.71443 -37.61755 -36.24934 -33.78982 -32.11985 -31.51824 -28.60952 -27.59871 -26.31080 -24.02642 -23.32356 -21.48042 -18.51547 -17.86311 -17.53561 -16.87743 -16.75021 -16.19737 -16.10800 -15.66064 -15.32896 -14.72029 -14.66406 -14.28654 -13.85713 -13.35947 -13.27037 -12.90320 -12.76661 -12.52948 -12.44723 -12.34372 -12.03318 -11.92456 -11.57861 -11.25200 -10.76560 -10.54763 -9.74200 -9.45026 -8.89452 -7.98533 -6.20050 0.22069 0.38385 1.09162 1.43733 1.45338 1.54473 2.45547 2.71434 2.72907 3.25709 3.76811 3.96488 4.12396 4.28286 4.39128 4.42619 4.45886 4.56283 4.59699 4.60673 4.76891 4.88401 5.03126 5.24116 5.31562 5.37971 5.73858 5.82336 5.89960 6.16434 6.19608 6.64464 7.09856 7.25778 7.52446 9.04844 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.025961 B = 0.005441 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.274675 B = 5144.836450 C = 5488.505328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.114 3.886 4 C -0.107 4.107 5 C -0.084 4.084 6 C -0.121 4.121 7 C -0.080 4.080 8 C 0.259 3.741 9 H 0.015 0.985 10 N -0.818 5.818 11 C -0.543 4.543 12 H 0.045 0.955 13 C 0.038 3.962 14 N -0.878 5.878 15 Si 0.947 3.053 16 H -0.278 1.278 17 H -0.283 1.283 18 H -0.272 1.272 19 C -0.122 4.122 20 C -0.030 4.030 21 Cl -0.066 7.066 22 H 0.051 0.949 23 H 0.100 0.900 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.149 0.851 28 H 0.126 0.874 29 H 0.313 0.687 30 H 0.325 0.675 31 H 0.256 0.744 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.615 1.266 2.199 18.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C 0.038 3.962 4 C -0.108 4.108 5 C -0.102 4.102 6 C -0.139 4.139 7 C -0.083 4.083 8 C 0.149 3.851 9 H 0.032 0.968 10 N -0.346 5.346 11 C -0.581 4.581 12 H 0.063 0.937 13 C -0.166 4.166 14 N -0.514 5.514 15 Si 0.773 3.227 16 H -0.203 1.203 17 H -0.209 1.209 18 H -0.196 1.196 19 C -0.142 4.142 20 C -0.056 4.056 21 Cl -0.037 7.037 22 H 0.070 0.930 23 H 0.119 0.881 24 H 0.072 0.928 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.167 0.833 28 H 0.144 0.856 29 H 0.124 0.876 30 H 0.138 0.862 31 H 0.065 0.935 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.614 1.402 2.035 17.786 hybrid contribution -0.450 0.240 -0.661 0.835 sum -18.063 1.643 1.374 18.190 Atomic orbital electron populations 1.22969 0.78893 1.04139 1.01088 1.87812 1.21837 1.27329 1.95669 1.21143 0.88054 0.85202 1.01776 1.19591 0.95501 0.91899 1.03791 1.21020 0.93772 0.97432 0.97950 1.21162 0.93708 0.98608 1.00418 1.21458 0.99516 0.92725 0.94612 1.17877 0.83350 0.91236 0.92598 0.96760 1.59001 1.67462 1.04621 1.03477 1.21085 0.92021 1.52173 0.92857 0.93670 1.25644 0.97058 0.94294 0.99641 1.70221 1.01534 1.47462 1.32175 0.85762 0.77732 0.78136 0.81091 1.20334 1.20909 1.19639 1.20943 0.92562 0.98286 1.02359 1.20608 0.92456 0.85973 1.06599 1.98322 1.82206 1.26186 1.96946 0.93028 0.88146 0.92845 0.90666 0.90986 0.83340 0.85566 0.87627 0.86158 0.93497 0.85800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 11.01 113.37 1.25 1.62 16 2 O -0.41 -9.43 9.18 -148.98 -1.37 -10.80 16 3 C 0.11 2.70 5.30 71.23 0.38 3.07 16 4 C -0.11 -3.23 5.88 -19.84 -0.12 -3.35 16 5 C -0.08 -2.67 9.38 22.26 0.21 -2.46 16 6 C -0.12 -4.41 9.29 22.27 0.21 -4.21 16 7 C -0.08 -3.33 4.88 -19.87 -0.10 -3.43 16 8 C 0.26 12.82 2.85 43.42 0.12 12.94 16 9 H 0.01 0.80 8.00 -2.39 -0.02 0.78 16 10 N -0.82 -37.92 8.37 -174.95 -1.46 -39.39 16 11 C -0.54 -29.73 8.70 25.60 0.22 -29.51 16 12 H 0.05 2.50 7.74 -2.91 -0.02 2.47 16 13 C 0.04 2.08 5.39 84.66 0.46 2.54 16 14 N -0.88 -51.20 12.77 21.45 0.27 -50.92 16 15 Si 0.95 43.79 29.54 68.60 2.03 45.82 16 16 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 17 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 19 C -0.12 -4.66 9.45 22.29 0.21 -4.45 16 20 C -0.03 -0.96 6.31 22.32 0.14 -0.82 16 21 Cl -0.07 -1.77 27.99 -2.72 -0.08 -1.85 16 22 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 23 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 25 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 27 H 0.15 4.21 7.01 -2.91 -0.02 4.19 16 28 H 0.13 4.49 6.67 -2.91 -0.02 4.47 16 29 H 0.31 12.93 9.06 -89.70 -0.81 12.12 16 30 H 0.33 14.15 7.35 -89.69 -0.66 13.49 16 31 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 32 H 0.12 4.75 8.04 -2.91 -0.02 4.73 16 Total: -1.00 -61.60 290.49 2.05 -59.55 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: -0.32 Total: 25.63 kcal Atomic # 6 Polarization: -31.03 SS G_CDS: 2.98 Total: -28.05 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -1.19 Total: -90.31 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -1.37 Total: -10.80 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -0.08 Total: -1.85 kcal Total: -61.60 2.05 -59.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260297290.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.646 kcal (2) G-P(sol) polarization free energy of solvation -61.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds