Wall clock time and date at job start Mon Mar 30 2020 06:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38197 * 120.02320 * 2 1 4 4 C 1.38238 * 120.07734 * 179.69891 * 3 2 1 5 5 C 1.38288 * 120.11586 * 0.55440 * 4 3 2 6 6 C 1.50698 * 119.97753 * 179.72875 * 5 4 3 7 7 H 1.09008 * 109.46977 * 219.72237 * 6 5 4 8 8 N 1.46904 * 109.46837 * 339.71495 * 6 5 4 9 9 C 1.52997 * 109.47721 * 99.72088 * 6 5 4 10 10 C 1.50701 * 109.47212 * 174.99887 * 9 6 5 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 6 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 6 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47094 * 90.00289 * 14 12 10 16 16 H 1.48505 * 109.47195 * 210.00171 * 14 12 10 17 17 H 1.48493 * 109.47449 * 330.00136 * 14 12 10 18 18 C 1.38216 * 120.04495 * 359.44069 * 5 4 3 19 19 Cl 1.73602 * 120.04019 * 180.29684 * 18 5 4 20 20 C 1.38659 * 120.02061 * 179.97438 * 2 1 3 21 21 O 1.35927 * 120.06376 * 0.04912 * 20 2 1 22 22 H 1.08988 * 109.47266 * 270.02546 * 1 2 3 23 23 H 1.09009 * 109.46664 * 30.02653 * 1 2 3 24 24 H 1.08997 * 109.46784 * 150.02095 * 1 2 3 25 25 H 1.07999 * 119.95640 * 359.97438 * 3 2 1 26 26 H 1.07996 * 119.94226 * 180.29636 * 4 3 2 27 27 H 1.00898 * 111.00551 * 296.05373 * 8 6 5 28 28 H 1.00898 * 110.99372 * 60.01160 * 8 6 5 29 29 H 1.09002 * 109.47153 * 54.99889 * 9 6 5 30 30 H 1.09001 * 109.46832 * 295.00079 * 9 6 5 31 31 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 32 32 H 0.96708 * 113.99946 * 269.98007 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1965 0.0000 4 6 3.5809 1.1979 0.0063 5 6 4.2759 0.0023 0.0010 6 6 5.7829 0.0074 0.0017 7 1 6.1492 -0.7787 -0.6586 8 7 6.2683 1.3105 -0.4722 9 6 6.2932 -0.2410 1.4225 10 6 7.7955 -0.3582 1.4034 11 1 8.3327 -0.2644 0.4711 12 6 8.4844 -0.5841 2.5762 13 7 7.8303 -0.6978 3.7114 14 14 10.3466 -0.7286 2.5525 15 1 10.9498 0.6142 2.7479 16 1 10.7869 -1.6328 3.6452 17 1 10.7836 -1.2822 1.2458 18 6 3.5894 -1.1973 0.0011 19 17 4.4620 -2.6980 0.0023 20 6 2.2008 -1.2006 0.0005 21 8 1.5229 -2.3787 0.0001 22 1 -0.3633 0.0005 1.0275 23 1 -0.3633 0.8898 -0.5143 24 1 -0.3633 -0.8902 -0.5135 25 1 1.6582 2.1316 -0.0004 26 1 4.1190 2.1342 0.0111 27 1 5.9987 1.4698 -1.4313 28 1 5.9420 2.0563 0.1239 29 1 5.8616 -1.1650 1.8072 30 1 6.0017 0.5908 2.0639 31 1 8.3149 -0.8571 4.5365 32 1 1.3263 -2.7198 0.8834 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260327835.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:26 Heat of formation + Delta-G solvation = -35.416938 kcal Electronic energy + Delta-G solvation = -16658.376628 eV Core-core repulsion = 13837.406270 eV Total energy + Delta-G solvation = -2820.970357 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.99841 -37.28700 -36.09533 -35.11399 -32.58950 -31.51124 -29.80208 -28.26779 -26.80216 -23.90195 -22.50268 -21.64196 -19.95581 -17.72081 -16.57846 -16.31388 -15.83171 -15.18808 -15.03429 -14.33565 -14.18478 -13.49814 -13.37920 -13.11696 -12.63469 -12.42804 -12.10077 -11.88060 -11.47028 -11.28187 -10.94724 -10.85973 -10.83516 -10.50315 -10.22791 -10.17379 -9.58120 -9.05045 -8.44603 -8.26688 -8.19061 -8.01980 -5.88841 -3.86972 1.23119 1.32640 2.51964 3.40474 3.45990 3.50525 3.59156 4.20566 4.56426 4.78890 4.92960 5.15157 5.32320 5.38891 5.44887 5.50645 5.52135 5.67240 5.80658 6.04667 6.20641 6.28990 6.40726 6.51796 6.73762 6.90297 7.56191 7.61716 7.70097 7.96851 8.09709 8.14324 8.54560 9.18487 9.74463 11.23083 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.030116 B = 0.006151 C = 0.005643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.528797 B = 4550.891701 C = 4960.860348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.119 4.119 3 C -0.101 4.101 4 C -0.124 4.124 5 C -0.080 4.080 6 C 0.129 3.871 7 H 0.088 0.912 8 N -0.820 5.820 9 C 0.039 3.961 10 C -0.491 4.491 11 H 0.062 0.938 12 C 0.051 3.949 13 N -0.903 5.903 14 Si 0.892 3.108 15 H -0.282 1.282 16 H -0.290 1.290 17 H -0.275 1.275 18 C -0.053 4.053 19 Cl -0.046 7.046 20 C 0.111 3.889 21 O -0.488 6.488 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.127 0.873 26 H 0.129 0.871 27 H 0.323 0.677 28 H 0.335 0.665 29 H 0.028 0.972 30 H 0.014 0.986 31 H 0.257 0.743 32 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.352 1.630 -6.961 16.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.120 4.120 3 C -0.119 4.119 4 C -0.142 4.142 5 C -0.083 4.083 6 C 0.017 3.983 7 H 0.106 0.894 8 N -0.348 5.348 9 C 0.002 3.998 10 C -0.529 4.529 11 H 0.080 0.920 12 C -0.148 4.148 13 N -0.543 5.543 14 Si 0.720 3.280 15 H -0.209 1.209 16 H -0.216 1.216 17 H -0.200 1.200 18 C -0.081 4.081 19 Cl -0.017 7.017 20 C 0.066 3.934 21 O -0.298 6.298 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.145 0.855 26 H 0.147 0.853 27 H 0.135 0.865 28 H 0.149 0.851 29 H 0.046 0.954 30 H 0.032 0.968 31 H 0.067 0.933 32 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -13.451 1.224 -7.247 15.328 hybrid contribution 0.015 -0.021 0.595 0.596 sum -13.436 1.203 -6.652 15.041 Atomic orbital electron populations 1.20628 0.90466 1.02985 1.02195 1.20007 0.96579 0.91924 1.03470 1.20928 0.93997 0.97101 0.99854 1.20970 0.93920 0.97624 1.01702 1.21301 1.00474 0.90884 0.95658 1.20938 0.83360 0.91904 1.02072 0.89450 1.58805 1.67030 1.03682 1.05286 1.19130 0.96496 0.97226 0.86967 1.21122 0.91334 1.46812 0.93651 0.91978 1.24997 0.98147 0.96005 0.95698 1.69970 1.35235 1.50863 0.98269 0.86593 0.86200 0.77724 0.77435 1.20879 1.21599 1.19958 1.21235 0.91185 0.88708 1.07006 1.98380 1.75797 1.31000 1.96531 1.17975 0.87829 0.85596 1.02040 1.84784 1.75957 1.35616 1.33402 0.91414 0.91577 0.90978 0.85527 0.85288 0.86547 0.85124 0.95383 0.96799 0.93297 0.75543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 9.79 36.01 0.35 -0.69 16 2 C -0.12 -1.57 5.89 -104.48 -0.62 -2.18 16 3 C -0.10 -1.30 9.70 -39.60 -0.38 -1.68 16 4 C -0.12 -1.84 9.25 -39.56 -0.37 -2.21 16 5 C -0.08 -1.42 5.08 -104.61 -0.53 -1.95 16 6 C 0.13 2.63 2.37 -68.86 -0.16 2.47 16 7 H 0.09 1.88 7.35 -51.92 -0.38 1.50 16 8 N -0.82 -14.89 8.43 -5.65 -0.05 -14.93 16 9 C 0.04 0.99 4.54 -27.88 -0.13 0.87 16 10 C -0.49 -13.86 8.84 -34.44 -0.30 -14.17 16 11 H 0.06 1.76 7.74 -52.49 -0.41 1.35 16 12 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 13 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 14 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 15 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 17 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 18 C -0.05 -0.93 6.32 -39.36 -0.25 -1.18 16 19 Cl -0.05 -0.84 26.19 -51.86 -1.36 -2.20 16 20 C 0.11 1.67 6.67 -39.20 -0.26 1.41 16 21 O -0.49 -6.40 12.01 -19.51 -0.23 -6.64 16 22 H 0.07 0.59 8.14 -51.94 -0.42 0.17 16 23 H 0.07 0.55 8.09 -51.92 -0.42 0.13 16 24 H 0.07 0.71 7.53 -51.93 -0.39 0.32 16 25 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 26 H 0.13 1.70 6.24 -52.49 -0.33 1.37 16 27 H 0.32 4.90 9.06 -39.29 -0.36 4.55 16 28 H 0.33 5.68 7.28 -39.29 -0.29 5.39 16 29 H 0.03 0.76 7.29 -51.93 -0.38 0.38 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.39 3.58 9.06 45.56 0.41 3.99 16 LS Contribution 286.99 15.07 4.32 4.32 Total: -1.00 -32.13 286.99 -7.28 -39.41 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -2.94 Total: 7.33 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -2.75 Total: -17.93 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.69 Total: -41.53 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.23 Total: -6.64 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.36 Total: -2.20 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.13 -7.28 -39.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260327835.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.993 kcal (2) G-P(sol) polarization free energy of solvation -32.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds